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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ATP5MG is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
81.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
236.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
233.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
214.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
206.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
201.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
194.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
183.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
179.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
176.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
176.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
173.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
171.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
169.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
169.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
168.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
163.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
161.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
159.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
157.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
154.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
153.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
148.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
145.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
144.6
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
143.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
143.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
142.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
141.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
138.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
137.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
136.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
135.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
135.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
134.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
133.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
131.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
130.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
129.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
128.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
127.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
127.6
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
126.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
125.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
124.9
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
124.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
124.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
120.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
119.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
119.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
118.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
117.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
117.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
115.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
114.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
113.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
113.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
113.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
112.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
112.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
112.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
112.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
112.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
111.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
110.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
110.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
110.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
110.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
110.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
109.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
108.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
108.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
107.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
105.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
105.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
105.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
104.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
103.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
103.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
101.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
101.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
100.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
99.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
98.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
98.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
97.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
97.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
96.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
96.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
96.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
96.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
96.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
95.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
95.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
95.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
95.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
94.4
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
94.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
94.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
93.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
93.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
93.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
92.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
92.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
92.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
91.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
91.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
91.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
91.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
91.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
91.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
91.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
90.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
90.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
90.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
90.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
90.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
90.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
90.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
90.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
89.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
88.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
87.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
87.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
87.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
87.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
87.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
86.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
86.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
85.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
85.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
85.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
85.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
84.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
84.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
84.4
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
83.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
83.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
82.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
82.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
82.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
82.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
82.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
82.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
82.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
81.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
81.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
81.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
80.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
80.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
80.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
79.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
79.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
79.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
79.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
79.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
79.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
78.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
78.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
78.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
77.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
77.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
77.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
77.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
77.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
77.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
76.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
76.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
76.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
76.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
76.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
76.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
76.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
75.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
75.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
74.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
74.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
74.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
74.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
74.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
74.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
74.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
74.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
74.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
73.9
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
73.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
73.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
72.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
72.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
72.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
72.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
71.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
71.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
71.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
71.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
71.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
71.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
71.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
70.7
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
70.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
70.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
70.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
70.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
69.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
68.9
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
68.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
68.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
68.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
68.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
68.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
68.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
68.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
67.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
67.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
67.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
67.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
67.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
67.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
67.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
67.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
66.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
66.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
66.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
66.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
66.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
66.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
66.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
65.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
65.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
65.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
65.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
65.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
65.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
65.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
64.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
64.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
64.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
64.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
64.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
64.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
63.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
63.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
63.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
63.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
62.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
62.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
62.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
62.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
62.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
62.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
62.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
62.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
62.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
61.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
61.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
61.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
61.1
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
60.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
60.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
60.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
60.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
59.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
59.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
59.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
59.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
58.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
58.1
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
57.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
57.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
57.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
57.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
57.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
56.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
56.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
56.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
56.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
54.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
54.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
54.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
53.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
53.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
53.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
53.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
53.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
53.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
53.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
52.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
52.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
52.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
51.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
51.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
51.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
51.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
51.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
51.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
51.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
50.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
50.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
50.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
50.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
50.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
50.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
50.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
50.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
50.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
50.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
50.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
49.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
49.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
49.3
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
49.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
48.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
48.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
47.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
47.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
47.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
45.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
45.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
45.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
45.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
45.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
44.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
44.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
43.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
43.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
43.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
42.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
42.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
42.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
42.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
41.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
41.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
41.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
41.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
40.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
40.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
40.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
40.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
40.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
39.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
39.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
39.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
39.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
39.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
38.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
38.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
38.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
37.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
37.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
36.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
35.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
34.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
34.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
34.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
33.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
33.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
33.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
33.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
31.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
31.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
26.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
24.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.8
571
Tumor
1.1
227
Tumor
0.9
513
Tumor
0.8
636
Normal
0.7
882
Normal
0.7
564
Normal
0.6
745
Tumor
0.6
615
Tumor
0.6
786
Normal
0.6
361
Tumor
0.6
648
Normal
0.6
314
Normal
0.6
714
Normal
0.6
278
Normal
0.6
618
Normal
0.6
423
Tumor
0.6
462
Normal
0.6
756
Normal
0.6
616
Normal
0.6
436
Normal
0.6
723
Tumor
0.6
426
Normal
0.6
713
Tumor
0.6
722
Normal
0.5
452
Normal
0.5
298
Normal
0.5
328
Normal
0.5
232
Normal
0.5
862
Normal
0.5
172
Normal
0.5
572
Normal
0.5
162
Normal
0.5
414
Normal
0.5
448
Normal
0.5
424
Normal
0.5
738
Normal
0.5
628
Normal
0.5
228
Normal
0.5
394
Normal
0.5
864
Normal
0.5
376
Normal
0.5
912
Normal
0.5
746
Normal
0.5
1032
Normal
0.5
1043
Tumor
0.5
866
Normal
0.5
824
Normal
0.5
466
Normal
0.5
568
Normal
0.5
742
Normal
0.5
464
Normal
0.5
922
Normal
0.5
356
Normal
0.5
964
Normal
0.5
515
Tumor
0.4
344
Normal
0.4
858
Normal
0.4
428
Normal
0.4
388
Normal
0.4
358
Normal
0.4
258
Normal
0.4
534
Normal
0.4
514
Normal
0.4
412
Normal
0.4
982
Normal
0.4
416
Normal
0.4
818
Normal
0.4
286
Normal
0.4
362
Normal
0.4
944
Normal
0.4
874
Normal
0.4
365
Tumor
0.4
196
Normal
0.4
1046
Normal
0.4
128
Normal
0.4
422
Normal
0.4
488
Normal
0.4
642
Normal
0.4
1014
Normal
0.4
432
Normal
0.4
635
Tumor
0.4
332
Normal
0.4
698
Normal
0.4
868
Normal
0.4
938
Normal
0.4
664
Normal
0.4
728
Normal
0.4
867
Tumor
0.4
222
Normal
0.4
132
Normal
0.4
878
Normal
0.3
484
Normal
0.3
364
Normal
0.3
528
Normal
0.3
981
Tumor
0.3
392
Normal
0.3
472
Normal
0.3
1045
Tumor
0.3
446
Normal
0.3
148
Normal
0.3
214
Normal
0.3
1027
Tumor
0.3
914
Normal
0.3
686
Normal
0.3
482
Normal
0.3
666
Normal
0.3
558
Normal
0.3
494
Normal
0.3
873
Tumor
0.3
111
Normal
0.3
186
Normal
0.3
546
Normal
0.3
518
Normal
0.3
716
Normal
0.3
284
Normal
0.3
138
Normal
0.3
342
Normal
0.3
884
Normal
0.3
465
Tumor
0.3
272
Normal
0.3
468
Normal
0.3
574
Normal
0.3
1016
Normal
0.2
526
Normal
0.2
456
Normal
0.2
257
Tumor
0.2
352
Normal
0.2
958
Normal
0.2
411
Tumor
0.2
984
Normal
0.2
487
Tumor
0.2
978
Normal
0.2
146
Normal
0.2
354
Normal
0.2
1044
Normal
0.2
1022
Normal
0.2
136
Normal
0.2
366
Normal
0.2
396
Normal
0.2
142
Normal
0.2
695
Tumor
0.2
368
Normal
0.2
1028
Normal
0.2
114
Normal
0.2
852
Normal
0.2
262
Normal
0.2
926
Normal
0.2
955
Tumor
0.2
1042
Normal
0.2
218
Normal
0.2
1026
Normal
0.2
816
Normal
0.2
744
Normal
0.2
696
Normal
0.1
863
Tumor
0.1
662
Normal
0.1
968
Normal
0.1
327
Tumor
0.1
474
Normal
0.1
386
Normal
0.1
537
Tumor
0.1
393
Tumor
0.1
434
Normal
0.1
976
Normal
0.1
188
Normal
0.1
451
Tumor
0.1
563
Tumor
0.1
353
Tumor
0.1
212
Normal
0.1
312
Normal
0.1
1041
Tumor
0.1
778
Normal
0.1
755
Tumor
0.1
517
Tumor
0.1
785
Tumor
0.1
956
Normal
0.1
918
Normal
0.1
952
Normal
0.1
461
Tumor
0.1
363
Tumor
0.1
557
Tumor
0.1
1025
Tumor
0.1
224
Normal
0.1
823
Tumor
0.1
911
Tumor
0.0
925
Tumor
0.0
478
Normal
0.0
954
Normal
0.0
924
Normal
0.0
415
Tumor
0.0
268
Normal
0.0
923
Tumor
0.0
126
Normal
0.0
516
Normal
0.0
524
Normal
0.0
727
Tumor
0.0
444
Normal
0.0
916
Normal
0.0
966
Normal
0.0
433
Tumor
0.0
481
Tumor
0.0
672
Normal
0.0
741
Tumor
0.0
145
Tumor
0.0
538
Normal
0.0
967
Tumor
0.0
443
Tumor
0.0
915
Tumor
0.0
567
Tumor
-0.1
1013
Tumor
-0.1
341
Tumor
-0.1
137
Tumor
-0.1
617
Tumor
-0.1
384
Normal
-0.1
491
Tumor
-0.1
953
Tumor
-0.1
777
Tumor
-0.1
483
Tumor
-0.1
525
Tumor
-0.1
492
Normal
-0.1
427
Tumor
-0.2
261
Tumor
-0.2
113
Tumor
-0.2
192
Normal
-0.2
527
Tumor
-0.2
431
Tumor
-0.2
554
Normal
-0.2
573
Tumor
-0.2
641
Tumor
-0.2
523
Tumor
-0.2
124
Normal
-0.2
191
Tumor
-0.2
721
Tumor
-0.2
231
Tumor
-0.2
425
Tumor
-0.2
357
Tumor
-0.3
267
Tumor
-0.3
313
Tumor
-0.3
861
Tumor
-0.3
883
Tumor
-0.3
187
Tumor
-0.3
536
Normal
-0.3
553
Tumor
-0.3
171
Tumor
-0.3
498
Normal
-0.3
135
Tumor
-0.3
957
Tumor
-0.3
814
Normal
-0.3
223
Tumor
-0.3
161
Tumor
-0.3
297
Tumor
-0.3
737
Tumor
-0.3
937
Tumor
-0.3
477
Tumor
-0.3
857
Tumor
-0.4
1031
Tumor
-0.4
813
Tumor
-0.4
112
Tumor
-0.4
217
Tumor
-0.4
663
Tumor
-0.4
271
Tumor
-0.4
413
Tumor
-0.4
125
Tumor
-0.4
647
Tumor
-0.4
195
Tumor
-0.4
533
Tumor
-0.4
221
Tumor
-0.4
697
Tumor
-0.4
185
Tumor
-0.4
387
Tumor
-0.4
213
Tumor
-0.4
127
Tumor
-0.4
913
Tumor
-0.4
421
Tumor
-0.5
921
Tumor
-0.5
743
Tumor
-0.5
435
Tumor
-0.5
815
Tumor
-0.5
951
Tumor
-0.5
467
Tumor
-0.5
851
Tumor
-0.5
383
Tumor
-0.5
715
Tumor
-0.5
1015
Tumor
-0.5
455
Tumor
-0.5
665
Tumor
-0.5
447
Tumor
-0.6
463
Tumor
-0.6
685
Tumor
-0.6
977
Tumor
-0.6
1021
Tumor
-0.6
355
Tumor
-0.6
881
Tumor
-0.6
445
Tumor
-0.6
285
Tumor
-0.6
141
Tumor
-0.6
147
Tumor
-0.6
471
Tumor
-0.6
963
Tumor
-0.6
367
Tumor
-0.7
351
Tumor
-0.7
391
Tumor
-0.7
983
Tumor
-0.7
343
Tumor
-0.7
375
Tumor
-0.7
493
Tumor
-0.7
385
Tumor
-0.7
395
Tumor
-0.7
277
Tumor
-0.7
473
Tumor
-0.7
865
Tumor
-0.8
497
Tumor
-0.8
917
Tumor
-0.8
943
Tumor
-0.8
975
Tumor
-0.9
877
Tumor
-0.9
331
Tumor
-0.9
671
Tumor
-0.9
724
Normal
-0.9
311
Tumor
-0.9
661
Tumor
-1.0
211
Tumor
-1.0
131
Tumor
-1.1
817
Tumor
-1.1
535
Tumor
-1.1
283
Tumor
-1.2
123
Tumor
-1.3
545
Tumor
-1.3
965
Tumor
-1.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
