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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
155.9
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 76.5
1984
Male, age 76, both hemispheres
169.3
2301
Female, age 85, both hemispheres
63.4
2188
Female, age 91, both hemispheres
46.4
2090
Male, age 80, both hemispheres
26.9
Dorsal cochlear nucleus nTPM: 33.8
2802
Male, age 74, right hemisphere
42.8
2187
Female, age 91, both hemispheres
37.2
2370
Male, age 61, both hemispheres
36.4
2058
Male, age 76, both hemispheres
34.8
2378
Male, age 80, both hemispheres
17.7
Dorsal tegmental nucleus nTPM: 42.6
2083
Male, age 80, both hemispheres
51.5
1936
Male, age 76, left hemisphere
51.4
2358
Male, age 61, both hemispheres
43.9
2326
Male, age 74, both hemispheres
23.5
Dorsolateral tegmental area nTPM: 29.3
2654
Male, age 80, both hemispheres
49.4
2141
Male, age 76, both hemispheres
34.0
2360
Male, age 74, both hemispheres
23.6
2751
Female, age 85, both hemispheres
19.8
2337
Male, age 61, both hemispheres
19.3
Kolliker-Fuse nucleus nTPM: 91.2
2793
Female, age 91, left hemisphere
133.0
2163
Male, age 80, both hemispheres
105.3
2315
Male, age 76, right hemisphere
35.4
Lateral lemniscal nuclei nTPM: 147.7
2453
Male, age 74, right hemisphere
173.8
2320
Female, age 91, left hemisphere
163.9
2169
Male, age 76, both hemispheres
153.1
2036
Male, age 80, both hemispheres
143.0
2746
Female, age 85, left hemisphere
105.0
Lateral parabrachial nucleus nTPM: 67.5
2139
Female, age 85, right hemisphere
122.0
2790
Male, age 61, both hemispheres
63.2
2013
Male, age 80, both hemispheres
59.9
2792
Male, age 76, both hemispheres
24.9
Lateral vestibular nucleus nTPM: 80.7
2184
Male, age 76, both hemispheres
118.2
2311
Male, age 80, both hemispheres
43.2
Locus coeruleus nTPM: 52.3
2720
Male, age 74, both hemispheres
87.5
2123
Female, age 91, both hemispheres
53.5
2162
Male, age 80, both hemispheres
49.7
1980
Male, age 76, both hemispheres
49.6
2317
Female, age 72, unknown
45.9
2788
Male, age 74, unknown
42.7
2014
Male, age 55, unknown
37.1
Medial parabrachial nucleus nTPM: 68.8
2463
Female, age 85, right hemisphere
117.2
2156
Male, age 61, both hemispheres
92.8
2854
Male, age 80, both hemispheres
62.0
2786
Male, age 76, both hemispheres
48.3
2170
Female, age 91, both hemispheres
23.6
Medial periolivary nuclei nTPM: 118.1
2171
Female, age 85, both hemispheres
175.1
2063
Male, age 76, both hemispheres
117.8
2791
Male, age 74, right hemisphere
108.3
2458
Female, age 91, both hemispheres
107.7
2081
Male, age 80, both hemispheres
81.5
Motor facial nucleus nTPM: 133.5
2327
Male, age 80, both hemispheres
244.4
2795
Female, age 91, both hemispheres
140.3
2365
Male, age 74, right hemisphere
131.8
2062
Male, age 76, both hemispheres
123.7
2697
Female, age 85, both hemispheres
119.7
2126
Male, age 61, both hemispheres
41.4
Motor trigeminal nucleus nTPM: 103.4
2079
Male, age 80, both hemispheres
173.2
2560
Male, age 74, both hemispheres
137.2
2321
Female, age 91, both hemispheres
75.3
2335
Male, age 61, both hemispheres
69.9
2309
Male, age 76, both hemispheres
61.3
Nuclei of the trapezoid body nTPM: 137.3
2735
Female, age 85, both hemispheres
163.4
2368
Female, age 91, both hemispheres
136.5
2159
Male, age 61, both hemispheres
134.2
2166
Male, age 80, both hemispheres
133.3
1983
Male, age 76, both hemispheres
118.9
Nucleus raphe magnus nTPM: 155.9
2172
Female, age 85, both hemispheres
202.8
2455
Male, age 74, both hemispheres
186.8
2328
Male, age 80, both hemispheres
170.9
2160
Male, age 61, both hemispheres
152.7
2459
Female, age 91, both hemispheres
119.9
2051
Male, age 76, both hemispheres
102.0
Paramedian reticular nucleus nTPM: 42.2
2050
Female, age 85, both hemispheres
67.2
2313
Male, age 61, both hemispheres
44.6
2057
Male, age 80, both hemispheres
35.5
2052
Male, age 76, both hemispheres
21.6
Pedunculopontine tegmental nucleus nTPM: 51.8
1921
Female, age 85, both hemispheres
60.3
2334
Male, age 80, both hemispheres
51.7
2338
Male, age 61, both hemispheres
43.4
Pontine nuclei nTPM: 110.8
2787
Female, age 85, both hemispheres
196.1
1968
Male, age 76, left hemisphere
134.7
2115
Male, age 80, left hemisphere
120.7
1863
Male, age 55, unknown
102.0
2727
Male, age 61, right hemisphere
90.3
2454
Male, age 74, left hemisphere
84.1
2109
Female, age 72, unknown
82.0
2319
Female, age 91, both hemispheres
76.8
Pontine raphe nucleus nTPM: 69.6
2122
Female, age 85, midline
95.5
2853
Male, age 76, midline
43.7
Posteroventral cochlear nucleus nTPM: 34.7
2752
Female, age 85, both hemispheres
70.7
2371
Male, age 61, both hemispheres
48.8
2070
Male, age 76, both hemispheres
40.5
2341
Male, age 80, both hemispheres
10.6
2135
Female, age 91, both hemispheres
3.0
Principal sensory trigeminal nucleus nTPM: 124.5
2008
Male, age 80, left hemisphere
151.3
2158
Male, age 61, both hemispheres
135.1
2367
Female, age 91, left hemisphere
111.2
2324
Male, age 76, both hemispheres
100.5
Reticular pontine nucleus, caudal nTPM: 119.0
2332
Male, age 80, right hemisphere
225.2
2457
Female, age 91, both hemispheres
97.2
2092
Male, age 76, both hemispheres
85.4
2559
Male, age 74, both hemispheres
68.2
Reticular pontine nucleus, oral nTPM: 69.2
2366
Female, age 91, both hemispheres
107.4
2361
Male, age 74, both hemispheres
92.2
2012
Female, age 85, both hemispheres
77.5
2167
Male, age 76, both hemispheres
43.6
1939
Male, age 80, both hemispheres
25.5
Reticulotegmental nucleus nTPM: 81.2
2333
Male, age 80, both hemispheres
90.3
2325
Male, age 76, both hemispheres
85.7
2452
Male, age 74, both hemispheres
76.6
2322
Female, age 91, both hemispheres
72.4
Spinal trigeminal nucleus, oral nTPM: 91.5
2737
Female, age 85, both hemispheres
124.6
1978
Male, age 76, both hemispheres
80.5
2164
Male, age 80, both hemispheres
69.3
Subcoeruleus area nTPM: 68.5
2089
Male, age 76, left hemisphere
124.1
1958
Male, age 80, both hemispheres
88.4
2323
Female, age 91, left hemisphere
66.6
2451
Male, age 74, both hemispheres
45.0
2369
Female, age 85, left hemisphere
18.5
Superior olive nTPM: 118.7
2561
Female, age 91, both hemispheres
153.3
2329
Male, age 80, right hemisphere
145.7
1875
Female, age 85, both hemispheres
125.0
2020
Male, age 76, both hemispheres
85.2
2364
Male, age 74, right hemisphere
84.2
Ventral periolivary nuclei nTPM: 153.9
2130
Female, age 85, both hemispheres
203.4
2794
Female, age 91, left hemisphere
169.3
2165
Male, age 80, both hemispheres
165.9
2023
Male, age 76, both hemispheres
77.2
Ventrolateral tegmental area, A5 NE cell group nTPM: 101.6
2449
Male, age 74, both hemispheres
162.9
1959
Male, age 76, both hemispheres
125.0
2161
Male, age 80, both hemispheres
116.0
2456
Female, age 91, both hemispheres
106.1
2840
Female, age 85, both hemispheres
66.6
2359
Male, age 61, both hemispheres
32.9
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
