MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.2 nTPM
HPA Brain:19.6 nTPM
GTEx:3.2 nTPM
FANTOM5:16.4 Scaled Tags Per Million
Pig:9.0 nTPM
Mouse:4.5 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 19.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.4
2586 Male, age 75, left hemisphere 19.9
1833 Male, age 53, unknown 18.0
2411 Female, age 72, unknown 16.6
2666 Male, age 74, left hemisphere 16.6
1830 Male, age 51, unknown 15.6
2828 Female, age 72, unknown 15.0
1827 Male, age 72, unknown 14.9
1870 Female, age 42, unknown 13.8
2019 Male, age 18, unknown 12.5
2219 Male, age 76, both hemispheres 11.6
Dorsal raphe nucleus
nTPM: 18.5
2298 Female, age 72, unknown 21.4
2047 Male, age 72, unknown 20.2
2016 Female, age 72, unknown 17.9
1828 Male, age 53, unknown 16.6
2750 Male, age 76, both hemispheres 16.6
Inferior colliculus
nTPM: 17.6
2849 Male, age 72, unknown 20.6
2097 Female, age 72, unknown 17.8
1848 Female, age 42, unknown 16.7
1890 Male, age 53, unknown 15.5
Median raphe nucleus
nTPM: 19.6
2220 Male, age 76, midline 19.6
Periaquaductal grey, anterior
nTPM: 17.0
1795 Male, age 51, unknown 18.0
1947 Male, age 18, unknown 17.2
2502 Female, age 75, unknown 15.7
Periaquaductal grey, dorsal
nTPM: 18.4
1840 Male, age 53, unknown 20.0
2464 Female, age 72, unknown 19.0
1831 Male, age 72, unknown 18.8
2850 Male, age 76, both hemispheres 16.0
Periaquaductal grey, lateral
nTPM: 18.5
2053 Male, age 18, unknown 19.3
2272 Male, age 74, both hemispheres 18.7
2140 Male, age 76, both hemispheres 17.4
Pretectal area
nTPM: 15.5
2224 Female, age 72, unknown 20.4
2825 Male, age 18, unknown 19.5
2407 Male, age 75, both hemispheres 17.8
2316 Male, age 76, right hemisphere 17.0
1815 Male, age 53, unknown 16.1
2667 Female, age 75, unknown 15.2
2273 Male, age 74, both hemispheres 14.8
1944 Female, age 72, unknown 13.1
2007 Male, age 72, unknown 12.7
1816 Male, age 51, unknown 12.4
1817 Female, age 42, unknown 11.7
Red nucleus
nTPM: 14.7
2584 Male, age 75, left hemisphere 23.3
2588 Male, age 74, left hemisphere 18.1
1904 Male, age 53, unknown 16.8
2823 Male, age 76, right hemisphere 15.9
2725 Female, age 75, unknown 14.6
1865 Male, age 51, unknown 14.0
2769 Male, age 72, unknown 13.7
2227 Male, age 72, unknown 13.3
2503 Female, age 72, unknown 12.8
1954 Female, age 42, unknown 12.0
1821 Female, age 72, unknown 11.2
2785 Male, age 18, unknown 10.9
Substantia nigra
nTPM: 15.0
2583 Male, age 75, right hemisphere 18.4
2665 Male, age 74, both hemispheres 18.2
2699 Male, age 18, unknown 17.7
1916 Female, age 42, unknown 16.4
2590 Female, age 75, unknown 15.4
1851 Male, age 51, unknown 15.2
2241 Male, age 72, unknown 14.5
1889 Female, age 72, unknown 11.6
1941 Male, age 53, unknown 11.5
2409 Female, age 72, unknown 11.3
Superior colliculus
nTPM: 15.9
2664 Male, age 75, both hemispheres 20.5
1839 Male, age 51, unknown 17.9
1995 Male, age 72, unknown 17.1
2668 Female, age 75, unknown 16.3
2261 Male, age 18, unknown 15.6
2087 Female, age 72, unknown 15.5
1796 Male, age 53, unknown 15.4
2587 Male, age 74, left hemisphere 14.8
1895 Male, age 76, right hemisphere 13.2
1913 Female, age 42, unknown 12.9
Ventral tegmental area
nTPM: 16.3
2410 Female, age 72, unknown 17.6
2021 Male, age 53, unknown 17.1
2218 Male, age 76, both hemispheres 16.9
1942 Male, age 51, unknown 16.4
1915 Female, age 42, unknown 15.3
2223 Female, age 72, unknown 14.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 3.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.2
Samples: 139

Max nTPM: 7.1
Min nTPM: 0.9
Std nTPM: 1.2
Median nTPM: 3.0
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 7.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 6.7
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 6.5
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 6.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 6.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 6.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 6.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 5.9
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 5.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 5.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 5.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 16.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.4
FF:10158-103A5 76 years, female 16.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 9.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.2
Samples: 4

Max nTPM: 8.2
Min nTPM: 4.9
Sample A Female 4.9
Sample B Female 5.9
Sample C Male 8.2
Sample D Male 5.7
Midbrain
nTPM: 5.3
Samples: 4

Max nTPM: 6.1
Min nTPM: 4.6
Sample A Female 4.6
Sample B Female 6.1
Sample C Male 5.4
Sample D Male 4.9
Periaqueductal gray
nTPM: 9.0
Samples: 3

Max nTPM: 10.6
Min nTPM: 8.1
Sample B Female 8.4
Sample C Male 10.6
Sample D Male 8.1
Superior colliculi
nTPM: 4.0
Samples: 4

Max nTPM: 4.9
Min nTPM: 2.3
Sample A Female 4.7
Sample B Female 2.3
Sample C Male 4.2
Sample D Male 4.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 4.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.5
Samples: 4

Max nTPM: 4.8
Min nTPM: 3.9
Sample A Male 4.8
Sample B Male 4.4
Sample C Female 4.8
Sample D Female 3.9

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