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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
URM1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
63.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
54.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
43.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
42.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
40.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
40.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
40.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
39.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
38.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
38.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
38.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
37.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
37.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
36.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
35.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
35.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
34.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
34.3
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
33.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
33.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
32.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
32.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
31.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
31.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
31.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
31.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
31.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
31.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
30.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
30.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
30.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
30.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
29.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
29.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
29.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
29.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
29.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
28.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
28.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
28.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
28.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
28.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
28.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
27.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
27.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
27.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
27.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
27.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
27.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
27.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
26.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
26.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
26.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
26.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
26.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
26.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
26.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
25.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
25.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
25.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
25.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
25.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
25.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
25.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
25.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
25.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
25.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
24.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
24.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
24.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
24.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
24.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
23.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
23.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
23.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
23.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
23.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
23.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
23.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
22.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
22.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
22.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
22.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
21.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
21.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
21.8
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
21.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
21.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
21.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
21.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
21.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
21.5
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
21.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
21.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
21.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
21.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
21.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
20.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
20.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
20.7
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
20.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
20.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
20.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
20.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
20.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
20.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
20.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
20.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
19.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
19.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
19.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
19.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
19.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
19.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
19.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
19.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
19.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
19.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
19.6
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
19.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
19.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
19.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
19.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
19.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
19.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
19.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
19.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
19.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
19.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
18.9
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
18.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
18.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
18.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
18.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
18.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
18.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
18.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
17.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
17.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
17.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
17.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
17.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
17.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
17.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
17.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
17.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
17.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
17.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
17.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
16.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
16.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
16.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
16.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
16.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
16.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
16.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
16.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
16.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
16.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
16.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
16.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
16.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
16.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
16.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
15.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
15.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
15.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
15.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
15.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
15.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
15.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
15.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.2
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
15.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
15.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
15.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
15.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
15.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
15.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
15.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
14.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
14.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
14.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
14.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
14.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
14.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
14.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
14.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
14.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
14.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
14.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
14.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
14.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
14.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
14.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
13.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
13.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
13.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
13.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
13.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
13.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
13.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
13.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
13.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
13.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
13.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.2
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
13.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
13.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
12.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
12.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
12.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
12.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
12.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
12.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
11.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
11.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
11.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
11.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
11.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
11.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
11.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
10.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
10.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.7
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
10.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
10.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
10.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
10.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
10.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
9.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
9.6
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
9.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
9.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
9.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
8.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
8.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.7
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
7.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
7.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
6.2
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
URM1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
30.4
Number of samples
231
Samples
Sample
Description
TPM
DO23511
0 years, female, NA, stage:3, dead, 180 days
87.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
81.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
73.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
73.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
69.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
69.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
67.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
67.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
66.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
66.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
65.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
65.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
62.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
60.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
59.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
57.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
56.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
55.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
55.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
53.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
53.7
DO45217
0 years, female, NA, stage:3, dead, 270 days
52.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
51.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
51.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
50.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
49.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
47.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
47.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
46.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
46.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
46.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
45.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
45.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
45.0
DO45269
0 years, male, NA, stage:3, alive, 750 days
43.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
43.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
43.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
42.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
42.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
41.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
41.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
40.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
40.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
40.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
39.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
39.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
39.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
38.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
38.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
38.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
38.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
37.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
37.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
37.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
37.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
37.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
37.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
37.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
37.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
36.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
35.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
35.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
35.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
35.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
35.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
34.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
34.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
34.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
34.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
33.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
33.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
33.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
33.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
33.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
33.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
32.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
32.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
32.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
32.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
32.1
DO48736
0 years, female, NA, stage:1, alive, 600 days
32.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
31.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
31.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
31.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
31.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
31.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
30.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
30.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
30.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
30.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
30.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
30.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
29.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
29.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
29.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
29.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
29.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
29.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
29.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
29.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
28.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
28.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
28.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
28.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
28.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
28.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
27.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
27.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
27.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
27.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
27.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
27.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
27.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
26.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
26.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
26.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
26.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
26.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
26.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
26.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
26.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
26.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
26.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
26.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
25.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
25.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
25.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
25.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
25.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
25.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
25.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
25.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
25.3
DO23549
0 years, male, NA, stage:3, alive, 990 days
25.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
25.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
25.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
24.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
24.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
24.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
24.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
24.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
24.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
23.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
23.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
23.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
23.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
23.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
23.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
23.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
23.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
23.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
22.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
22.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
22.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
22.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
22.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
22.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
22.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
22.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
22.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
22.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
22.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
22.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
22.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
22.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
22.1
DO45215
0 years, male, NA, stage:2, alive, 1170 days
21.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
21.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
21.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
21.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
21.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
21.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
20.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
20.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
20.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
20.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
19.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
19.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
19.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
18.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
18.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
18.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
18.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
18.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
17.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
17.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
17.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
17.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
16.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
16.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
16.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
15.8
DO45094
0 years, male, NA, stage:3, alive, 1650 days
15.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
15.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.0
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.3
DO50807
0 years, male, NA, stage:1, alive, 540 days
14.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
14.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
13.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
13.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
13.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
12.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
12.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
9.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
8.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
435
Tumor
1.2
463
Tumor
1.1
567
Tumor
1.1
571
Tumor
1.1
877
Tumor
1.0
663
Tumor
0.9
573
Tumor
0.8
123
Tumor
0.8
1015
Tumor
0.8
743
Tumor
0.7
724
Normal
0.7
617
Tumor
0.7
451
Tumor
0.7
745
Tumor
0.6
127
Tumor
0.6
671
Tumor
0.6
227
Tumor
0.6
456
Normal
0.5
641
Tumor
0.5
695
Tumor
0.5
343
Tumor
0.5
464
Normal
0.5
467
Tumor
0.5
277
Tumor
0.5
112
Tumor
0.5
635
Tumor
0.4
285
Tumor
0.4
715
Tumor
0.4
647
Tumor
0.4
881
Tumor
0.4
741
Tumor
0.4
851
Tumor
0.4
341
Tumor
0.4
393
Tumor
0.4
145
Tumor
0.4
627
Tumor
0.4
192
Normal
0.4
737
Tumor
0.4
223
Tumor
0.4
557
Tumor
0.4
444
Normal
0.4
911
Tumor
0.3
365
Tumor
0.3
221
Tumor
0.3
913
Tumor
0.3
468
Normal
0.3
713
Tumor
0.3
213
Tumor
0.3
465
Tumor
0.3
433
Tumor
0.3
331
Tumor
0.3
964
Normal
0.3
231
Tumor
0.3
147
Tumor
0.3
884
Normal
0.3
271
Tumor
0.3
727
Tumor
0.3
917
Tumor
0.3
1014
Normal
0.3
383
Tumor
0.3
191
Tumor
0.3
354
Normal
0.3
628
Normal
0.3
466
Normal
0.3
376
Normal
0.2
978
Normal
0.2
976
Normal
0.2
391
Tumor
0.2
141
Tumor
0.2
618
Normal
0.2
146
Normal
0.2
966
Normal
0.2
344
Normal
0.2
171
Tumor
0.2
311
Tumor
0.2
574
Normal
0.2
368
Normal
0.2
446
Normal
0.2
136
Normal
0.2
436
Normal
0.2
563
Tumor
0.2
384
Normal
0.2
357
Tumor
0.2
983
Tumor
0.1
432
Normal
0.1
616
Normal
0.1
358
Normal
0.1
342
Normal
0.1
268
Normal
0.1
375
Tumor
0.1
361
Tumor
0.1
517
Tumor
0.1
742
Normal
0.1
515
Tumor
0.1
385
Tumor
0.1
261
Tumor
0.1
217
Tumor
0.1
865
Tumor
0.1
351
Tumor
0.1
283
Tumor
0.1
224
Normal
0.1
332
Normal
0.1
395
Tumor
0.1
125
Tumor
0.1
314
Normal
0.1
914
Normal
0.1
113
Tumor
0.1
313
Tumor
0.1
882
Normal
0.1
362
Normal
0.1
1016
Normal
0.1
353
Tumor
0.1
124
Normal
0.1
912
Normal
0.1
187
Tumor
0.1
568
Normal
0.1
746
Normal
0.0
452
Normal
0.0
813
Tumor
0.0
232
Normal
0.0
721
Tumor
0.0
297
Tumor
0.0
434
Normal
0.0
132
Normal
0.0
286
Normal
0.0
186
Normal
0.0
138
Normal
0.0
392
Normal
0.0
188
Normal
0.0
126
Normal
0.0
777
Tumor
0.0
564
Normal
0.0
267
Tumor
0.0
878
Normal
0.0
866
Normal
0.0
867
Tumor
0.0
135
Tumor
0.0
963
Tumor
0.0
497
Tumor
0.0
921
Tumor
0.0
858
Normal
0.0
814
Normal
0.0
982
Normal
0.0
148
Normal
0.0
262
Normal
0.0
128
Normal
0.0
744
Normal
0.0
394
Normal
0.0
111
Normal
0.0
366
Normal
0.0
196
Normal
0.0
195
Tumor
0.0
642
Normal
0.0
666
Normal
0.0
528
Normal
0.0
648
Normal
0.0
824
Normal
0.0
278
Normal
0.0
214
Normal
0.0
723
Tumor
-0.1
786
Normal
-0.1
722
Normal
-0.1
161
Tumor
-0.1
572
Normal
-0.1
387
Tumor
-0.1
661
Tumor
-0.1
367
Tumor
-0.1
738
Normal
-0.1
298
Normal
-0.1
162
Normal
-0.1
445
Tumor
-0.1
664
Normal
-0.1
818
Normal
-0.1
883
Tumor
-0.1
665
Tumor
-0.1
728
Normal
-0.1
388
Normal
-0.1
615
Tumor
-0.1
386
Normal
-0.1
863
Tumor
-0.1
984
Normal
-0.1
272
Normal
-0.1
172
Normal
-0.1
636
Normal
-0.1
958
Normal
-0.1
431
Tumor
-0.1
396
Normal
-0.1
926
Normal
-0.1
918
Normal
-0.1
922
Normal
-0.1
257
Tumor
-0.2
218
Normal
-0.2
1021
Tumor
-0.2
662
Normal
-0.2
258
Normal
-0.2
185
Tumor
-0.2
312
Normal
-0.2
114
Normal
-0.2
861
Tumor
-0.2
868
Normal
-0.2
981
Tumor
-0.2
352
Normal
-0.2
977
Tumor
-0.2
284
Normal
-0.2
518
Normal
-0.2
864
Normal
-0.2
916
Normal
-0.2
873
Tumor
-0.2
862
Normal
-0.3
514
Normal
-0.3
714
Normal
-0.3
222
Normal
-0.3
685
Tumor
-0.3
1041
Tumor
-0.3
943
Tumor
-0.3
526
Normal
-0.3
815
Tumor
-0.3
716
Normal
-0.3
513
Tumor
-0.3
915
Tumor
-0.3
498
Normal
-0.3
228
Normal
-0.3
1032
Normal
-0.3
142
Normal
-0.3
1027
Tumor
-0.4
968
Normal
-0.4
874
Normal
-0.4
1022
Normal
-0.4
672
Normal
-0.4
493
Tumor
-0.4
443
Tumor
-0.4
525
Tumor
-0.4
755
Tumor
-0.4
455
Tumor
-0.4
131
Tumor
-0.4
955
Tumor
-0.4
816
Normal
-0.4
1026
Normal
-0.4
534
Normal
-0.4
952
Normal
-0.4
696
Normal
-0.4
857
Tumor
-0.4
516
Normal
-0.5
137
Tumor
-0.5
523
Tumor
-0.5
491
Tumor
-0.5
951
Tumor
-0.5
545
Tumor
-0.5
686
Normal
-0.5
546
Normal
-0.5
1028
Normal
-0.5
967
Tumor
-0.5
538
Normal
-0.5
925
Tumor
-0.5
778
Normal
-0.5
558
Normal
-0.5
492
Normal
-0.5
1025
Tumor
-0.5
483
Tumor
-0.5
527
Tumor
-0.6
852
Normal
-0.6
923
Tumor
-0.6
937
Tumor
-0.6
965
Tumor
-0.6
953
Tumor
-0.6
954
Normal
-0.6
1031
Tumor
-0.6
211
Tumor
-0.6
924
Normal
-0.6
212
Normal
-0.6
524
Normal
-0.6
554
Normal
-0.6
537
Tumor
-0.6
1042
Normal
-0.6
1013
Tumor
-0.7
938
Normal
-0.7
817
Tumor
-0.7
785
Tumor
-0.7
484
Normal
-0.7
494
Normal
-0.7
975
Tumor
-0.7
553
Tumor
-0.7
956
Normal
-0.7
488
Normal
-0.7
957
Tumor
-0.8
756
Normal
-0.8
944
Normal
-0.8
533
Tumor
-0.9
823
Tumor
-0.9
487
Tumor
-1.0
471
Tumor
N/A
472
Normal
N/A
473
Tumor
N/A
474
Normal
N/A
355
Tumor
N/A
356
Normal
N/A
477
Tumor
N/A
478
Normal
N/A
481
Tumor
N/A
482
Normal
N/A
363
Tumor
N/A
364
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1046
Normal
N/A
1045
Tumor
N/A
411
Tumor
N/A
412
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
535
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
416
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
447
Tumor
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
697
Tumor
N/A
698
Normal
N/A
461
Tumor
N/A
462
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
