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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
COQ4 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
39.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
100.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
86.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
85.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
83.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
83.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
78.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
77.9
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
76.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
73.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
70.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
68.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
68.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
68.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
68.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
67.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
65.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
65.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
65.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
64.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
62.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
62.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
61.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
60.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
59.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
59.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
58.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
58.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
58.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
58.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
58.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
58.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
57.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
57.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
57.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
56.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
56.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
56.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
56.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
55.8
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
55.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
55.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
55.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
54.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
54.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
54.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
54.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
54.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
54.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
54.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
54.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
53.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
53.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
52.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
52.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
52.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
52.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
52.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
52.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
52.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
52.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
51.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
51.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
51.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
51.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
51.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
50.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
50.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
50.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
50.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
50.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
50.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
50.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
50.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
49.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
49.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
49.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
49.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
48.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
48.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
48.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
48.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
48.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
48.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
48.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
47.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
47.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
47.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
47.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
47.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
47.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
47.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
47.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
47.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
47.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
46.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
46.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
46.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
45.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
45.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
45.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
45.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
45.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
45.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
45.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
44.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
44.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
44.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
44.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
43.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
43.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
43.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
43.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
43.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
43.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
43.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
43.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
43.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
43.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
42.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
42.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
42.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
42.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
42.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
42.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
42.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
42.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
42.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
42.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
41.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
41.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
41.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
41.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
41.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
41.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
41.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
41.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
41.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
41.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
41.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
41.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
41.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
40.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
40.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
40.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
40.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
40.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
40.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
40.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
40.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
40.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
39.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
39.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
39.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
39.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
39.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
39.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
38.9
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
38.7
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
38.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
38.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
38.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
38.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
38.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
38.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
38.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
38.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
38.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
37.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
37.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
37.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
37.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
37.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
37.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
37.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
37.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
37.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
37.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
37.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
37.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
37.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
37.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
37.3
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
37.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
37.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
37.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
36.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
36.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
36.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
36.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
36.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
36.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
36.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
35.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
35.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
35.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
35.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
35.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
35.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
35.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
35.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
34.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
34.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
34.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
34.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
34.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
34.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
34.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
34.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
34.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
34.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
34.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
34.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
33.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
33.7
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
33.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
33.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
33.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
33.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
33.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
32.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
32.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
32.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
32.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
32.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
32.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
32.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
32.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
32.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
32.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
32.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
32.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
32.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
32.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
32.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
32.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
31.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
31.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
31.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
31.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
31.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
31.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
31.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
31.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
31.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
31.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
31.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
31.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
31.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
31.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
31.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
31.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
31.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
31.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
31.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
31.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
30.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
30.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
30.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
30.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
30.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
30.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
30.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
30.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
30.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
30.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
30.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
30.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
30.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
29.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
29.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
29.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
29.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
29.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
29.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
29.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
29.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
29.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
29.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
29.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
29.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
28.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
28.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
28.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
28.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
28.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
28.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
28.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
28.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
28.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
28.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
28.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
28.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
28.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
28.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
28.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
28.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
27.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
27.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
27.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
27.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
27.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
26.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
26.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
26.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
26.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
26.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
26.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
26.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
26.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
26.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
26.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
26.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
26.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
26.0
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
26.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
25.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
25.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
25.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
25.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
25.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
25.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
25.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
24.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
24.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
23.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
23.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
23.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
23.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
23.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
22.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
22.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
22.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
22.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
21.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
21.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
21.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
21.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
21.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
21.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
21.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
21.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
21.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
20.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
20.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
19.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
19.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
19.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
19.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
18.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
17.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
16.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
16.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
16.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
16.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
15.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
11.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
COQ4 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
21.4
Number of samples
231
Samples
Sample
Description
TPM
DO23532
0 years, female, NA, stage:1, alive, 960 days
78.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
56.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
52.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
49.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
49.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
48.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
46.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
45.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
43.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
42.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
40.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
40.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
37.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
37.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
37.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
36.2
DO48672
0 years, male, NA, stage:2, alive, 450 days
34.4
DO45241
0 years, male, NA, stage:1, alive, 1080 days
34.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
34.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
34.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
33.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
33.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
32.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
32.0
DO23546
0 years, male, NA, stage:2, alive, 1050 days
31.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
31.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
31.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
31.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
30.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
30.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
30.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
30.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
30.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
30.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
30.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
30.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
29.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
29.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
28.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
28.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
28.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
28.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
28.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
27.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
27.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
26.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
26.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
26.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
26.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
25.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
25.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
25.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
25.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
25.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
25.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
25.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
24.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
24.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
24.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
24.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
24.5
DO45143
0 years, male, NA, stage:3, alive, 1290 days
24.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
24.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
24.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
24.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
24.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
24.1
DO50805
0 years, male, NA, stage:2, alive, 690 days
23.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
23.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
23.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
23.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
23.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
23.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
23.2
DO50787
0 years, male, NA, stage:3, alive, 480 days
23.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
22.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
22.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
22.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
22.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
22.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
22.4
DO23519
0 years, male, NA, stage:3, alive, 630 days
22.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
22.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
21.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
21.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
21.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
21.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
21.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
21.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
21.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
21.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
21.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
21.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
21.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
21.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
21.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
21.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
20.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
20.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
20.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
20.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
20.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
20.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
20.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
20.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
20.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
20.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
20.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
20.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
19.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
19.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
19.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
19.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
19.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
19.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
19.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
19.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
19.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
19.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
18.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
18.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
18.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
18.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
18.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
18.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
17.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
17.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
17.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
17.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
17.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
17.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
17.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
17.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
17.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
16.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
16.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
16.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
16.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
16.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
15.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.9
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
15.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
15.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
15.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
15.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
15.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
15.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
15.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
15.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
15.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
15.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.8
DO48725
0 years, male, NA, stage:1, alive, 780 days
14.8
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
14.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
14.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
13.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
13.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
13.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
13.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
13.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
13.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
13.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
13.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
13.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
13.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
13.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
12.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
11.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
10.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
10.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
8.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
261
Tumor
1.1
981
Tumor
0.9
452
Normal
0.9
568
Normal
0.9
546
Normal
0.8
756
Normal
0.8
918
Normal
0.8
627
Tumor
0.8
914
Normal
0.8
786
Normal
0.8
884
Normal
0.8
571
Tumor
0.7
186
Normal
0.7
618
Normal
0.7
358
Normal
0.7
428
Normal
0.7
922
Normal
0.7
356
Normal
0.7
128
Normal
0.6
944
Normal
0.6
446
Normal
0.6
138
Normal
0.6
342
Normal
0.6
414
Normal
0.6
534
Normal
0.6
436
Normal
0.6
982
Normal
0.6
636
Normal
0.6
192
Normal
0.6
852
Normal
0.6
526
Normal
0.6
926
Normal
0.6
482
Normal
0.6
472
Normal
0.6
954
Normal
0.6
394
Normal
0.6
388
Normal
0.6
332
Normal
0.6
232
Normal
0.6
231
Tumor
0.6
432
Normal
0.6
514
Normal
0.6
465
Tumor
0.6
868
Normal
0.5
468
Normal
0.5
1016
Normal
0.5
958
Normal
0.5
171
Tumor
0.5
172
Normal
0.5
424
Normal
0.5
462
Normal
0.5
416
Normal
0.5
564
Normal
0.5
364
Normal
0.5
648
Normal
0.5
864
Normal
0.5
916
Normal
0.5
662
Normal
0.5
463
Tumor
0.5
392
Normal
0.5
354
Normal
0.5
113
Tumor
0.5
572
Normal
0.5
862
Normal
0.5
132
Normal
0.5
127
Tumor
0.5
746
Normal
0.5
528
Normal
0.5
464
Normal
0.4
434
Normal
0.4
426
Normal
0.4
815
Tumor
0.4
393
Tumor
0.4
162
Normal
0.4
494
Normal
0.4
286
Normal
0.4
574
Normal
0.4
298
Normal
0.4
912
Normal
0.4
366
Normal
0.4
723
Tumor
0.4
222
Normal
0.4
824
Normal
0.4
352
Normal
0.4
714
Normal
0.4
915
Tumor
0.4
368
Normal
0.4
866
Normal
0.4
1028
Normal
0.3
488
Normal
0.3
145
Tumor
0.3
867
Tumor
0.3
1022
Normal
0.3
481
Tumor
0.3
362
Normal
0.3
422
Normal
0.3
976
Normal
0.3
466
Normal
0.3
642
Normal
0.3
196
Normal
0.3
474
Normal
0.3
858
Normal
0.3
142
Normal
0.3
1014
Normal
0.3
968
Normal
0.3
451
Tumor
0.3
696
Normal
0.3
365
Tumor
0.3
423
Tumor
0.3
284
Normal
0.3
1032
Normal
0.3
956
Normal
0.3
978
Normal
0.3
314
Normal
0.3
114
Normal
0.3
456
Normal
0.3
262
Normal
0.3
628
Normal
0.3
278
Normal
0.3
258
Normal
0.3
686
Normal
0.3
955
Tumor
0.3
376
Normal
0.2
218
Normal
0.2
874
Normal
0.2
722
Normal
0.2
666
Normal
0.2
672
Normal
0.2
137
Tumor
0.2
882
Normal
0.2
816
Normal
0.2
716
Normal
0.2
478
Normal
0.2
567
Tumor
0.2
412
Normal
0.2
952
Normal
0.2
616
Normal
0.2
268
Normal
0.2
492
Normal
0.2
1026
Normal
0.2
195
Tumor
0.2
111
Normal
0.2
538
Normal
0.2
344
Normal
0.2
214
Normal
0.2
126
Normal
0.2
272
Normal
0.2
516
Normal
0.2
818
Normal
0.2
537
Tumor
0.2
228
Normal
0.2
1042
Normal
0.2
224
Normal
0.2
554
Normal
0.2
742
Normal
0.2
433
Tumor
0.2
384
Normal
0.2
328
Normal
0.2
411
Tumor
0.2
444
Normal
0.2
857
Tumor
0.2
146
Normal
0.2
558
Normal
0.2
664
Normal
0.1
124
Normal
0.1
212
Normal
0.1
513
Tumor
0.1
744
Normal
0.1
484
Normal
0.1
277
Tumor
0.1
778
Normal
0.1
1041
Tumor
0.1
386
Normal
0.1
136
Normal
0.1
873
Tumor
0.1
312
Normal
0.1
524
Normal
0.1
938
Normal
0.1
715
Tumor
0.1
148
Normal
0.1
738
Normal
0.1
396
Normal
0.1
498
Normal
0.1
913
Tumor
0.0
391
Tumor
0.0
878
Normal
0.0
713
Tumor
0.0
924
Normal
0.0
984
Normal
0.0
917
Tumor
0.0
415
Tumor
0.0
435
Tumor
0.0
361
Tumor
0.0
188
Normal
0.0
131
Tumor
-0.1
112
Tumor
-0.1
721
Tumor
-0.1
518
Normal
-0.1
141
Tumor
-0.1
421
Tumor
-0.1
1046
Normal
-0.1
743
Tumor
-0.1
267
Tumor
-0.1
937
Tumor
-0.1
728
Normal
-0.1
911
Tumor
-0.1
966
Normal
-0.1
217
Tumor
-0.1
383
Tumor
-0.1
813
Tumor
-0.1
695
Tumor
-0.1
863
Tumor
-0.1
877
Tumor
-0.1
615
Tumor
-0.1
477
Tumor
-0.1
785
Tumor
-0.1
745
Tumor
-0.1
191
Tumor
-0.2
921
Tumor
-0.2
445
Tumor
-0.2
123
Tumor
-0.2
367
Tumor
-0.2
964
Normal
-0.2
483
Tumor
-0.2
814
Normal
-0.2
665
Tumor
-0.2
227
Tumor
-0.2
557
Tumor
-0.2
461
Tumor
-0.2
641
Tumor
-0.2
953
Tumor
-0.2
285
Tumor
-0.2
851
Tumor
-0.3
341
Tumor
-0.3
883
Tumor
-0.3
147
Tumor
-0.3
755
Tumor
-0.3
1015
Tumor
-0.3
493
Tumor
-0.3
187
Tumor
-0.3
925
Tumor
-0.3
375
Tumor
-0.3
727
Tumor
-0.3
161
Tumor
-0.3
221
Tumor
-0.3
448
Normal
-0.3
967
Tumor
-0.3
957
Tumor
-0.3
443
Tumor
-0.3
467
Tumor
-0.4
698
Normal
-0.4
357
Tumor
-0.4
257
Tumor
-0.4
427
Tumor
-0.4
861
Tumor
-0.4
185
Tumor
-0.4
297
Tumor
-0.4
425
Tumor
-0.4
395
Tumor
-0.4
431
Tumor
-0.4
741
Tumor
-0.4
1044
Normal
-0.4
517
Tumor
-0.4
331
Tumor
-0.4
343
Tumor
-0.4
491
Tumor
-0.4
865
Tumor
-0.4
951
Tumor
-0.5
413
Tumor
-0.5
213
Tumor
-0.5
737
Tumor
-0.5
573
Tumor
-0.5
663
Tumor
-0.5
671
Tumor
-0.5
523
Tumor
-0.5
635
Tumor
-0.5
515
Tumor
-0.5
313
Tumor
-0.5
1045
Tumor
-0.5
353
Tumor
-0.6
533
Tumor
-0.6
823
Tumor
-0.6
617
Tumor
-0.6
685
Tumor
-0.6
881
Tumor
-0.6
661
Tumor
-0.6
563
Tumor
-0.6
943
Tumor
-0.6
355
Tumor
-0.6
125
Tumor
-0.7
487
Tumor
-0.7
525
Tumor
-0.7
385
Tumor
-0.7
283
Tumor
-0.7
647
Tumor
-0.7
777
Tumor
-0.7
983
Tumor
-0.7
327
Tumor
-0.7
351
Tumor
-0.7
363
Tumor
-0.8
135
Tumor
-0.8
977
Tumor
-0.8
447
Tumor
-0.8
471
Tumor
-0.8
223
Tumor
-0.8
497
Tumor
-0.8
1043
Tumor
-0.9
387
Tumor
-0.9
311
Tumor
-0.9
963
Tumor
-0.9
1031
Tumor
-0.9
527
Tumor
-0.9
923
Tumor
-0.9
1013
Tumor
-0.9
724
Normal
-1.0
271
Tumor
-1.0
975
Tumor
-1.0
473
Tumor
-1.0
211
Tumor
-1.0
455
Tumor
-1.0
536
Normal
-1.0
535
Tumor
-1.1
1027
Tumor
-1.2
817
Tumor
-1.3
553
Tumor
-1.4
697
Tumor
-1.5
1025
Tumor
-1.6
965
Tumor
-1.6
545
Tumor
-1.7
1021
Tumor
-2.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
