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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PDIA3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
69.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
48.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
43.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
42.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
37.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
37.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
37.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
37.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
36.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
35.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
34.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
34.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
33.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
32.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
31.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
30.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
29.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
28.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
28.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
28.9
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
28.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
28.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
28.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
27.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
27.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
27.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
27.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
26.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
26.6
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
26.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
26.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
25.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
25.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
25.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
25.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
24.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
24.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
24.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
24.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
24.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
23.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
23.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
23.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
23.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
23.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
23.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
23.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
22.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
22.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
22.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
22.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
22.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
22.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
22.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
22.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
22.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
22.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
22.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
21.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
21.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
21.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
21.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
21.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
21.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
21.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
21.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
21.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
21.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
21.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
21.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
21.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
21.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
21.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
20.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
20.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
20.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
20.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
20.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
20.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
20.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
20.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
20.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
20.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
20.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
20.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
20.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
19.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
19.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
19.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
19.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
19.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
19.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
19.6
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
19.5
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
19.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
19.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
19.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
19.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
19.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
19.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
19.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
18.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
18.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
18.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
18.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
18.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
18.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
18.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
18.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
18.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
18.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
18.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
18.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
18.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
18.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
18.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
18.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
18.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
18.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
18.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
17.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
17.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.6
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.6
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
17.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
17.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
17.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
17.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
17.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
17.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
17.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
17.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
17.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
17.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
16.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
16.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
16.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
16.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
16.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
16.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
16.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
16.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
16.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
16.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
16.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
16.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
16.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
16.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
16.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
16.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
16.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
15.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
15.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
15.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
15.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
15.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
15.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
15.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
15.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
15.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
14.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
14.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
14.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
14.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
14.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
14.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
14.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
14.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
14.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
14.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
14.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
14.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
14.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
14.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
13.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
13.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
13.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
13.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
13.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
13.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
13.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
13.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
13.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
13.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
13.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
13.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
13.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
13.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
13.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
13.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
13.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
13.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
12.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
12.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
12.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
12.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
12.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
12.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
12.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
12.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
12.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
12.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.1
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
12.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
12.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
11.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
11.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
11.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
11.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
11.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
11.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
11.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
11.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
11.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
10.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
10.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
10.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
10.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.1
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
9.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
9.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
9.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
9.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
9.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
9.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.2
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
9.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.0
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
9.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
8.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
8.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
7.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
7.4
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
7.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
6.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
4.8
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PDIA3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
194.7
Number of samples
231
Samples
Sample
Description
TPM
DO45185
0 years, male, NA, stage:2, alive, 600 days
645.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
632.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
503.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
454.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
428.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
418.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
399.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
394.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
390.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
387.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
368.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
364.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
355.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
354.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
353.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
351.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
341.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
341.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
328.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
328.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
327.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
327.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
324.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
318.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
316.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
290.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
287.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
286.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
280.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
280.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
278.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
277.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
277.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
276.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
274.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
273.4
DO48717
0 years, male, NA, stage:4, dead, 180 days
272.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
267.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
266.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
264.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
263.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
261.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
260.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
253.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
253.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
252.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
251.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
248.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
248.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
245.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
242.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
236.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
236.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
235.0
DO50808
0 years, male, NA, stage:2, alive, 570 days
231.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
230.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
230.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
230.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
227.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
227.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
224.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
222.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
222.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
222.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
221.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
221.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
221.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
220.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
220.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
217.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
216.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
216.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
216.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
215.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
214.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
214.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
213.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
208.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
208.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
207.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
207.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
205.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
203.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
203.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
202.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
202.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
200.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
199.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
199.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
199.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
196.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
196.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
196.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
196.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
195.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
194.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
194.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
194.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
193.4
DO45231
0 years, male, NA, stage:2, alive, 930 days
192.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
192.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
191.5
DO45225
0 years, male, NA, stage:1, alive, 1050 days
191.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
188.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
185.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
184.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
184.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
183.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
183.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
183.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
182.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
181.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
181.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
180.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
180.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
179.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
179.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
178.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
178.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
176.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
176.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
174.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
174.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
174.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
173.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
172.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
170.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
169.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
169.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
167.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
167.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
167.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
166.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
165.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
163.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
161.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
161.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
160.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
159.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
158.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
157.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
156.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
156.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
154.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
153.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
153.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
152.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
151.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
149.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
148.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
147.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
146.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
146.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
145.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
143.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
143.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
143.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
142.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
142.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
142.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
141.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
141.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
140.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
140.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
139.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
139.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
138.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
138.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
137.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
135.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
135.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
135.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
134.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
133.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
133.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
132.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
131.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
131.6
DO45091
0 years, male, NA, stage:2, dead, 1320 days
131.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
129.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
127.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
126.9
DO45267
0 years, male, NA, stage:3, dead, 570 days
126.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
125.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
125.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
124.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
124.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
123.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
122.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
122.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
119.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
115.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
113.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
113.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
112.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
112.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
110.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
110.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
110.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
109.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
107.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
107.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
105.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
105.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
104.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
104.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
103.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
99.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
98.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
97.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
96.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
95.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
94.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
93.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
93.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
92.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
92.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
89.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
87.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
84.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
83.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
83.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
83.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
82.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
80.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
76.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
73.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
71.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
68.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
67.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
58.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
813
Tumor
1.0
445
Tumor
0.9
227
Tumor
0.7
357
Tumor
0.7
387
Tumor
0.6
1021
Tumor
0.5
983
Tumor
0.5
857
Tumor
0.5
527
Tumor
0.5
937
Tumor
0.4
1015
Tumor
0.4
814
Normal
0.4
727
Tumor
0.4
1014
Normal
0.3
636
Normal
0.3
481
Tumor
0.3
523
Tumor
0.3
286
Normal
0.3
1044
Normal
0.3
978
Normal
0.3
113
Tumor
0.3
951
Tumor
0.3
135
Tumor
0.3
723
Tumor
0.3
257
Tumor
0.3
926
Normal
0.3
696
Normal
0.3
778
Normal
0.3
368
Normal
0.3
1026
Normal
0.2
963
Tumor
0.2
573
Tumor
0.2
218
Normal
0.2
686
Normal
0.2
615
Tumor
0.2
467
Tumor
0.2
785
Tumor
0.2
228
Normal
0.2
392
Normal
0.2
777
Tumor
0.2
938
Normal
0.2
554
Normal
0.2
376
Normal
0.2
331
Tumor
0.2
1022
Normal
0.2
982
Normal
0.2
358
Normal
0.2
285
Tumor
0.2
526
Normal
0.2
714
Normal
0.2
514
Normal
0.2
984
Normal
0.2
142
Normal
0.2
721
Tumor
0.2
528
Normal
0.2
863
Tumor
0.2
922
Normal
0.2
866
Normal
0.1
212
Normal
0.1
968
Normal
0.1
332
Normal
0.1
756
Normal
0.1
1032
Normal
0.1
698
Normal
0.1
955
Tumor
0.1
557
Tumor
0.1
1043
Tumor
0.1
944
Normal
0.1
524
Normal
0.1
127
Tumor
0.1
738
Normal
0.1
284
Normal
0.1
918
Normal
0.1
412
Normal
0.1
421
Tumor
0.1
128
Normal
0.1
966
Normal
0.1
1046
Normal
0.1
342
Normal
0.1
975
Tumor
0.1
314
Normal
0.1
1016
Normal
0.1
354
Normal
0.1
196
Normal
0.1
488
Normal
0.1
452
Normal
0.1
534
Normal
0.1
414
Normal
0.1
536
Normal
0.1
433
Tumor
0.1
195
Tumor
0.1
878
Normal
0.1
912
Normal
0.1
426
Normal
0.1
964
Normal
0.1
742
Normal
0.1
862
Normal
0.1
1025
Tumor
0.1
111
Normal
0.1
518
Normal
0.1
114
Normal
0.1
648
Normal
0.1
728
Normal
0.1
916
Normal
0.1
864
Normal
0.1
137
Tumor
0.1
755
Tumor
0.1
662
Normal
0.1
1027
Tumor
0.1
572
Normal
0.1
224
Normal
0.1
546
Normal
0.1
394
Normal
0.1
568
Normal
0.1
882
Normal
0.1
746
Normal
0.0
448
Normal
0.0
356
Normal
0.0
914
Normal
0.0
786
Normal
0.0
716
Normal
0.0
558
Normal
0.0
466
Normal
0.0
352
Normal
0.0
661
Tumor
0.0
744
Normal
0.0
743
Tumor
0.0
232
Normal
0.0
823
Tumor
0.0
446
Normal
0.0
124
Normal
0.0
816
Normal
0.0
484
Normal
0.0
1028
Normal
0.0
954
Normal
0.0
616
Normal
0.0
515
Tumor
0.0
327
Tumor
0.0
628
Normal
0.0
976
Normal
0.0
666
Normal
0.0
148
Normal
0.0
482
Normal
0.0
498
Normal
0.0
494
Normal
0.0
952
Normal
0.0
635
Tumor
0.0
415
Tumor
0.0
474
Normal
0.0
298
Normal
0.0
817
Tumor
0.0
138
Normal
0.0
1042
Normal
0.0
468
Normal
0.0
462
Normal
0.0
883
Tumor
0.0
873
Tumor
0.0
925
Tumor
0.0
545
Tumor
0.0
186
Normal
0.0
443
Tumor
0.0
477
Tumor
0.0
132
Normal
0.0
722
Normal
0.0
436
Normal
0.0
538
Normal
0.0
136
Normal
0.0
858
Normal
0.0
112
Tumor
0.0
664
Normal
0.0
393
Tumor
0.0
478
Normal
0.0
388
Normal
0.0
432
Normal
0.0
553
Tumor
0.0
422
Normal
0.0
884
Normal
0.0
672
Normal
0.0
435
Tumor
0.0
185
Tumor
0.0
455
Tumor
0.0
824
Normal
0.0
262
Normal
0.0
492
Normal
0.0
364
Normal
0.0
924
Normal
0.0
642
Normal
0.0
384
Normal
0.0
362
Normal
-0.1
172
Normal
-0.1
424
Normal
-0.1
222
Normal
-0.1
344
Normal
-0.1
353
Tumor
-0.1
516
Normal
-0.1
472
Normal
-0.1
713
Tumor
-0.1
396
Normal
-0.1
958
Normal
-0.1
868
Normal
-0.1
385
Tumor
-0.1
217
Tumor
-0.1
956
Normal
-0.1
852
Normal
-0.1
464
Normal
-0.1
126
Normal
-0.1
737
Tumor
-0.1
564
Normal
-0.1
367
Tumor
-0.1
214
Normal
-0.1
272
Normal
-0.1
328
Normal
-0.1
162
Normal
-0.1
258
Normal
-0.1
497
Tumor
-0.1
981
Tumor
-0.1
618
Normal
-0.1
146
Normal
-0.1
386
Normal
-0.1
923
Tumor
-0.1
818
Normal
-0.1
366
Normal
-0.1
463
Tumor
-0.1
431
Tumor
-0.1
851
Tumor
-0.1
563
Tumor
-0.1
874
Normal
-0.1
695
Tumor
-0.1
416
Normal
-0.1
187
Tumor
-0.1
574
Normal
-0.1
915
Tumor
-0.1
188
Normal
-0.1
391
Tumor
-0.1
283
Tumor
-0.1
375
Tumor
-0.1
567
Tumor
-0.2
1045
Tumor
-0.2
312
Normal
-0.2
361
Tumor
-0.2
411
Tumor
-0.2
428
Normal
-0.2
917
Tumor
-0.2
434
Normal
-0.2
456
Normal
-0.2
617
Tumor
-0.2
147
Tumor
-0.2
444
Normal
-0.2
278
Normal
-0.2
953
Tumor
-0.2
343
Tumor
-0.2
268
Normal
-0.2
487
Tumor
-0.2
471
Tumor
-0.2
867
Tumor
-0.2
351
Tumor
-0.2
191
Tumor
-0.2
161
Tumor
-0.2
1013
Tumor
-0.2
341
Tumor
-0.2
697
Tumor
-0.2
647
Tumor
-0.2
1031
Tumor
-0.2
533
Tumor
-0.2
535
Tumor
-0.2
395
Tumor
-0.2
131
Tumor
-0.2
921
Tumor
-0.2
745
Tumor
-0.2
231
Tumor
-0.2
447
Tumor
-0.2
213
Tumor
-0.2
141
Tumor
-0.3
383
Tumor
-0.3
517
Tumor
-0.3
741
Tumor
-0.3
671
Tumor
-0.3
125
Tumor
-0.3
192
Normal
-0.3
171
Tumor
-0.3
913
Tumor
-0.3
493
Tumor
-0.3
663
Tumor
-0.3
861
Tumor
-0.3
461
Tumor
-0.3
977
Tumor
-0.3
365
Tumor
-0.3
815
Tumor
-0.3
881
Tumor
-0.3
877
Tumor
-0.3
423
Tumor
-0.3
271
Tumor
-0.3
627
Tumor
-0.3
277
Tumor
-0.3
571
Tumor
-0.3
145
Tumor
-0.3
311
Tumor
-0.3
451
Tumor
-0.3
313
Tumor
-0.4
211
Tumor
-0.4
261
Tumor
-0.4
413
Tumor
-0.4
513
Tumor
-0.4
425
Tumor
-0.4
965
Tumor
-0.4
1041
Tumor
-0.4
537
Tumor
-0.4
473
Tumor
-0.4
223
Tumor
-0.4
267
Tumor
-0.4
355
Tumor
-0.4
715
Tumor
-0.4
641
Tumor
-0.4
427
Tumor
-0.5
483
Tumor
-0.5
665
Tumor
-0.5
525
Tumor
-0.5
221
Tumor
-0.5
911
Tumor
-0.5
123
Tumor
-0.5
685
Tumor
-0.5
943
Tumor
-0.5
957
Tumor
-0.6
491
Tumor
-0.6
297
Tumor
-0.6
967
Tumor
-0.6
724
Normal
-0.6
363
Tumor
-0.6
465
Tumor
-0.7
865
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.