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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MAPRE2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
67.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
37.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
30.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
29.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
27.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
26.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
26.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
25.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
25.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
24.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
24.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
23.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
23.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
22.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
22.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
21.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
20.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
20.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
18.7
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
18.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
18.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
18.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
18.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
18.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
17.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
17.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
17.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
17.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
17.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
16.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
16.5
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
16.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
15.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
15.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
15.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
15.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
14.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
14.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
14.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
14.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
13.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
13.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
13.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
13.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
13.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
13.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
13.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
13.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
13.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
13.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
12.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
12.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
12.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
12.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
12.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
12.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
12.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
12.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
11.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
11.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
10.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
10.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
10.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
10.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
10.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
9.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
9.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
9.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
9.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
9.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
9.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.3
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
9.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
8.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
8.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
8.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
8.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
8.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
8.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.2
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
7.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
7.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.8
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
7.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
7.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
7.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
7.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
6.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
6.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
6.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
6.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
6.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
6.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
6.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
6.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
5.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
5.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
5.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.4
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
5.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
5.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.3
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
4.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
4.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
3.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
3.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
3.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
2.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
MAPRE2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.0
Number of samples
231
Samples
Sample
Description
TPM
DO23523
0 years, male, NA, stage:3, alive, 1080 days
47.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
41.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
40.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
36.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
30.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
30.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
29.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
28.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
28.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
27.2
DO50808
0 years, male, NA, stage:2, alive, 570 days
27.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
26.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
25.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
25.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
24.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
23.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
23.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
23.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
23.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
22.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
22.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
22.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
21.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
21.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
21.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
21.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
21.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
20.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
20.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
20.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
20.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
20.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
19.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
19.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
19.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
19.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
19.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
19.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
18.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
18.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
18.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
18.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
18.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
18.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
17.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
17.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
17.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
17.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
16.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
16.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
16.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
15.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
15.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
15.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
15.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
14.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
14.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
14.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
14.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
14.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
14.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
14.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
14.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
13.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
13.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
12.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
12.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
12.6
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.6
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
12.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
11.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
11.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
11.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
11.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
11.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
10.7
DO45091
0 years, male, NA, stage:2, dead, 1320 days
10.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
9.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
9.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
8.5
DO45257
0 years, male, NA, stage:3, alive, 810 days
8.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
8.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
7.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
7.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
7.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
7.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
6.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
5.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
5.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
5.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.5
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
5.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
4.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
4.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
3.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
2.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.2
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
925
Tumor
2.2
513
Tumor
1.6
533
Tumor
1.6
525
Tumor
1.3
367
Tumor
1.2
983
Tumor
1.2
471
Tumor
1.1
851
Tumor
1.1
443
Tumor
1.0
137
Tumor
0.9
1013
Tumor
0.9
557
Tumor
0.9
123
Tumor
0.9
427
Tumor
0.9
387
Tumor
0.8
113
Tumor
0.8
883
Tumor
0.8
535
Tumor
0.8
477
Tumor
0.7
451
Tumor
0.7
863
Tumor
0.6
431
Tumor
0.6
421
Tumor
0.6
955
Tumor
0.6
665
Tumor
0.6
423
Tumor
0.6
415
Tumor
0.6
617
Tumor
0.6
493
Tumor
0.5
351
Tumor
0.5
954
Normal
0.5
873
Tumor
0.5
563
Tumor
0.5
913
Tumor
0.4
956
Normal
0.4
958
Normal
0.4
383
Tumor
0.4
444
Normal
0.4
267
Tumor
0.4
966
Normal
0.3
492
Normal
0.3
161
Tumor
0.3
937
Tumor
0.3
391
Tumor
0.3
223
Tumor
0.3
1015
Tumor
0.3
478
Normal
0.3
553
Tumor
0.3
311
Tumor
0.3
413
Tumor
0.3
857
Tumor
0.3
231
Tumor
0.3
127
Tumor
0.3
663
Tumor
0.3
878
Normal
0.2
473
Tumor
0.2
524
Normal
0.2
957
Tumor
0.2
852
Normal
0.2
268
Normal
0.2
627
Tumor
0.2
536
Normal
0.2
195
Tumor
0.2
395
Tumor
0.2
516
Normal
0.2
192
Normal
0.2
661
Tumor
0.2
1028
Normal
0.2
724
Normal
0.2
868
Normal
0.2
214
Normal
0.1
498
Normal
0.1
211
Tumor
0.1
916
Normal
0.1
716
Normal
0.1
1044
Normal
0.1
191
Tumor
0.1
355
Tumor
0.1
815
Tumor
0.1
361
Tumor
0.1
952
Normal
0.1
224
Normal
0.1
786
Normal
0.1
353
Tumor
0.1
978
Normal
0.1
641
Tumor
0.1
951
Tumor
0.1
384
Normal
0.1
697
Tumor
0.1
963
Tumor
0.1
538
Normal
0.1
911
Tumor
0.1
968
Normal
0.1
967
Tumor
0.1
814
Normal
0.1
465
Tumor
0.1
884
Normal
0.1
145
Tumor
0.1
813
Tumor
0.1
686
Normal
0.1
416
Normal
0.1
756
Normal
0.1
567
Tumor
0.1
976
Normal
0.1
284
Normal
0.1
528
Normal
0.0
312
Normal
0.0
412
Normal
0.0
715
Tumor
0.0
188
Normal
0.0
1042
Normal
0.0
298
Normal
0.0
472
Normal
0.0
546
Normal
0.0
537
Tumor
0.0
984
Normal
0.0
434
Normal
0.0
1014
Normal
0.0
874
Normal
0.0
474
Normal
0.0
816
Normal
0.0
558
Normal
0.0
918
Normal
0.0
943
Tumor
0.0
662
Normal
0.0
362
Normal
0.0
938
Normal
0.0
212
Normal
0.0
1022
Normal
0.0
628
Normal
0.0
422
Normal
0.0
1046
Normal
0.0
328
Normal
0.0
386
Normal
0.0
218
Normal
0.0
385
Tumor
0.0
1045
Tumor
0.0
297
Tumor
0.0
213
Tumor
-0.1
862
Normal
-0.1
778
Normal
-0.1
926
Normal
-0.1
636
Normal
-0.1
126
Normal
-0.1
923
Tumor
-0.1
392
Normal
-0.1
744
Normal
-0.1
364
Normal
-0.1
777
Tumor
-0.1
464
Normal
-0.1
217
Tumor
-0.1
944
Normal
-0.1
554
Normal
-0.1
228
Normal
-0.1
526
Normal
-0.1
447
Tumor
-0.1
924
Normal
-0.1
917
Tumor
-0.1
363
Tumor
-0.1
514
Normal
-0.1
518
Normal
-0.1
696
Normal
-0.1
572
Normal
-0.1
132
Normal
-0.1
864
Normal
-0.1
861
Tumor
-0.1
746
Normal
-0.1
823
Tumor
-0.1
914
Normal
-0.1
114
Normal
-0.1
185
Tumor
-0.1
866
Normal
-0.1
262
Normal
-0.1
142
Normal
-0.1
1032
Normal
-0.1
642
Normal
-0.1
138
Normal
-0.1
455
Tumor
-0.1
462
Normal
-0.1
146
Normal
-0.2
742
Normal
-0.2
915
Tumor
-0.2
922
Normal
-0.2
456
Normal
-0.2
882
Normal
-0.2
982
Normal
-0.2
494
Normal
-0.2
785
Tumor
-0.2
366
Normal
-0.2
128
Normal
-0.2
671
Tumor
-0.2
953
Tumor
-0.2
616
Normal
-0.2
468
Normal
-0.2
424
Normal
-0.2
135
Tumor
-0.2
467
Tumor
-0.2
527
Tumor
-0.2
461
Tumor
-0.2
448
Normal
-0.2
482
Normal
-0.2
722
Normal
-0.2
375
Tumor
-0.2
666
Normal
-0.2
824
Normal
-0.2
818
Normal
-0.2
721
Tumor
-0.2
723
Tumor
-0.2
1026
Normal
-0.2
272
Normal
-0.2
965
Tumor
-0.2
738
Normal
-0.2
912
Normal
-0.2
124
Normal
-0.2
745
Tumor
-0.2
172
Normal
-0.2
285
Tumor
-0.2
698
Normal
-0.2
141
Tumor
-0.2
136
Normal
-0.2
881
Tumor
-0.2
376
Normal
-0.3
564
Normal
-0.3
672
Normal
-0.3
664
Normal
-0.3
488
Normal
-0.3
432
Normal
-0.3
534
Normal
-0.3
388
Normal
-0.3
877
Tumor
-0.3
466
Normal
-0.3
426
Normal
-0.3
484
Normal
-0.3
187
Tumor
-0.3
1016
Normal
-0.3
714
Normal
-0.3
728
Normal
-0.3
964
Normal
-0.3
428
Normal
-0.3
568
Normal
-0.3
111
Normal
-0.3
261
Tumor
-0.3
396
Normal
-0.3
342
Normal
-0.3
483
Tumor
-0.3
258
Normal
-0.3
755
Tumor
-0.3
332
Normal
-0.3
463
Tumor
-0.3
148
Normal
-0.4
452
Normal
-0.4
741
Tumor
-0.4
433
Tumor
-0.4
278
Normal
-0.4
1031
Tumor
-0.4
446
Normal
-0.4
232
Normal
-0.4
354
Normal
-0.4
713
Tumor
-0.4
394
Normal
-0.4
313
Tumor
-0.4
411
Tumor
-0.4
368
Normal
-0.4
491
Tumor
-0.4
737
Tumor
-0.4
341
Tumor
-0.4
171
Tumor
-0.4
648
Normal
-0.4
414
Normal
-0.4
1021
Tumor
-0.4
352
Normal
-0.4
858
Normal
-0.4
695
Tumor
-0.4
618
Normal
-0.4
162
Normal
-0.4
977
Tumor
-0.5
196
Normal
-0.5
817
Tumor
-0.5
574
Normal
-0.5
497
Tumor
-0.5
356
Normal
-0.5
344
Normal
-0.5
615
Tumor
-0.5
186
Normal
-0.5
975
Tumor
-0.5
314
Normal
-0.5
515
Tumor
-0.5
331
Tumor
-0.5
481
Tumor
-0.5
257
Tumor
-0.5
358
Normal
-0.5
445
Tumor
-0.5
425
Tumor
-0.5
545
Tumor
-0.5
865
Tumor
-0.6
365
Tumor
-0.6
222
Normal
-0.6
147
Tumor
-0.6
283
Tumor
-0.6
286
Normal
-0.6
227
Tumor
-0.6
436
Normal
-0.6
867
Tumor
-0.6
647
Tumor
-0.7
125
Tumor
-0.7
635
Tumor
-0.7
327
Tumor
-0.8
487
Tumor
-0.8
357
Tumor
-0.8
573
Tumor
-0.8
221
Tumor
-0.8
435
Tumor
-0.8
571
Tumor
-0.9
1025
Tumor
-0.9
1043
Tumor
-0.9
981
Tumor
-0.9
277
Tumor
-1.0
271
Tumor
-1.0
343
Tumor
-1.0
685
Tumor
-1.0
1027
Tumor
-1.0
1041
Tumor
-1.1
921
Tumor
-1.1
112
Tumor
-1.2
523
Tumor
-1.2
727
Tumor
-1.4
517
Tumor
-1.5
131
Tumor
-1.5
393
Tumor
-1.6
743
Tumor
-1.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
