We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
AKTIP is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
36.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
36.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
35.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
33.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
32.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
30.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
30.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
29.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
29.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
29.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
26.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
26.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
26.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
25.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
23.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
23.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
23.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
22.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
22.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
22.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
22.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
21.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
21.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
21.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
21.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
21.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
21.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
20.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
20.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
20.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
20.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
20.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
20.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
20.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
19.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
19.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
19.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
18.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
18.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
18.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
18.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
18.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
17.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
17.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
17.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
17.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
17.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
17.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
17.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
16.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
16.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
16.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
16.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
16.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
16.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
15.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
15.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
15.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
15.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
15.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
15.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
15.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
15.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
14.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
14.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
14.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
14.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
14.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
13.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
13.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
13.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
13.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
13.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
13.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
13.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
13.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.8
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
12.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
12.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
12.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
12.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
12.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
12.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
12.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
12.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
12.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
12.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
12.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
11.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
11.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
11.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
11.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
11.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
11.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
11.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.3
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.3
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
11.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
11.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
10.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
10.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
10.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
10.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
10.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
10.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
10.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
10.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
10.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
9.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.9
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
9.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.7
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
9.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
9.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
9.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
9.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
9.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
9.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
9.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
9.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
9.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
9.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
9.2
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
9.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
9.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
8.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
8.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
8.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
8.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
8.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
8.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
8.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
8.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.9
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
7.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
7.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
7.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.3
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
7.1
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
7.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
7.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
6.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
6.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
6.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.8
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
6.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
6.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
6.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
6.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
6.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
6.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
6.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.5
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
6.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
6.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.1
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
6.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
5.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
5.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
5.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
5.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
5.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
5.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
5.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
5.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
4.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
4.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
3.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
3.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
3.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
AKTIP is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.6
Number of samples
231
Samples
Sample
Description
TPM
DO48732
0 years, male, NA, stage:3, alive, 630 days
29.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
29.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
28.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
27.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
26.7
DO45177
0 years, female, NA, stage:3, alive, 1260 days
26.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
26.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
25.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
24.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
24.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
24.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
23.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
23.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
23.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
22.8
DO50809
0 years, male, NA, stage:3, dead, 720 days
22.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
22.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
22.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
22.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
22.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
22.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
22.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
21.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
21.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
21.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
21.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
20.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
20.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
20.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
20.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
20.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
20.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
20.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
20.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
20.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
19.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
18.5
DO45205
0 years, female, NA, stage:2, dead, 90 days
18.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
18.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
18.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
18.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
17.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
17.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
17.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
17.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
17.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
17.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
17.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
17.0
DO23523
0 years, male, NA, stage:3, alive, 1080 days
16.9
DO48679
0 years, male, NA, stage:2, alive, 1200 days
16.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
16.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
16.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
16.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
16.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
16.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
16.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
16.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.1
DO48757
0 years, female, NA, stage:3, alive, 480 days
16.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
16.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
16.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
15.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
15.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
15.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
15.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
15.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
15.1
DO50776
0 years, male, NA, stage:1, alive, 690 days
15.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
14.8
DO23518
0 years, male, NA, stage:2, alive, 1320 days
14.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
14.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
14.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
14.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
14.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
14.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
14.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
13.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
13.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
13.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
13.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
13.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
13.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
13.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
13.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
13.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
12.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
12.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
12.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
12.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
12.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
12.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
11.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
11.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.7
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
11.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
11.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
11.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
11.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
10.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
10.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
10.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
10.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
10.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
10.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
10.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
10.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
10.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
10.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.4
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
8.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.4
DO45133
0 years, male, NA, stage:3, dead, 660 days
8.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
8.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
8.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
8.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
7.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
7.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
7.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.2
DO45189
0 years, female, NA, stage:2, alive, 1200 days
7.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
7.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
6.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.9
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
6.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
6.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
6.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
5.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
5.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.7
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
4.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
0.9
777
Tumor
0.8
327
Tumor
0.7
926
Normal
0.6
481
Tumor
0.6
925
Tumor
0.6
955
Tumor
0.6
918
Normal
0.5
952
Normal
0.5
981
Tumor
0.5
785
Tumor
0.5
627
Tumor
0.5
746
Normal
0.5
191
Tumor
0.5
393
Tumor
0.5
1014
Normal
0.5
395
Tumor
0.5
482
Normal
0.5
786
Normal
0.5
616
Normal
0.4
147
Tumor
0.4
513
Tumor
0.4
1013
Tumor
0.4
365
Tumor
0.4
128
Normal
0.4
474
Normal
0.4
944
Normal
0.4
917
Tumor
0.4
863
Tumor
0.4
982
Normal
0.4
956
Normal
0.4
527
Tumor
0.4
472
Normal
0.4
123
Tumor
0.3
922
Normal
0.3
978
Normal
0.3
778
Normal
0.3
921
Tumor
0.3
412
Normal
0.3
924
Normal
0.3
714
Normal
0.3
953
Tumor
0.3
868
Normal
0.3
462
Normal
0.3
756
Normal
0.3
866
Normal
0.3
426
Normal
0.3
528
Normal
0.3
415
Tumor
0.3
1046
Normal
0.3
916
Normal
0.3
728
Normal
0.3
824
Normal
0.3
352
Normal
0.3
873
Tumor
0.3
862
Normal
0.3
874
Normal
0.3
984
Normal
0.3
1016
Normal
0.3
864
Normal
0.3
446
Normal
0.3
617
Tumor
0.3
1015
Tumor
0.3
698
Normal
0.3
964
Normal
0.3
328
Normal
0.3
647
Tumor
0.3
436
Normal
0.3
642
Normal
0.3
428
Normal
0.3
286
Normal
0.3
228
Normal
0.3
697
Tumor
0.3
968
Normal
0.3
937
Tumor
0.3
618
Normal
0.3
628
Normal
0.3
938
Normal
0.3
738
Normal
0.3
356
Normal
0.2
723
Tumor
0.2
222
Normal
0.2
463
Tumor
0.2
137
Tumor
0.2
127
Tumor
0.2
1045
Tumor
0.2
696
Normal
0.2
851
Tumor
0.2
432
Normal
0.2
416
Normal
0.2
478
Normal
0.2
716
Normal
0.2
364
Normal
0.2
424
Normal
0.2
954
Normal
0.2
445
Tumor
0.2
858
Normal
0.2
471
Tumor
0.2
354
Normal
0.2
146
Normal
0.2
196
Normal
0.2
818
Normal
0.2
358
Normal
0.2
914
Normal
0.2
284
Normal
0.2
635
Tumor
0.2
636
Normal
0.2
113
Tumor
0.2
518
Normal
0.2
422
Normal
0.2
686
Normal
0.2
368
Normal
0.2
852
Normal
0.2
558
Normal
0.2
488
Normal
0.2
545
Tumor
0.2
448
Normal
0.2
913
Tumor
0.2
958
Normal
0.1
396
Normal
0.1
214
Normal
0.1
413
Tumor
0.1
1028
Normal
0.1
126
Normal
0.1
387
Tumor
0.1
218
Normal
0.1
568
Normal
0.1
484
Normal
0.1
742
Normal
0.1
755
Tumor
0.1
465
Tumor
0.1
923
Tumor
0.1
136
Normal
0.1
514
Normal
0.1
884
Normal
0.1
615
Tumor
0.1
816
Normal
0.1
976
Normal
0.1
456
Normal
0.1
882
Normal
0.1
722
Normal
0.1
145
Tumor
0.1
376
Normal
0.1
114
Normal
0.1
232
Normal
0.1
388
Normal
0.1
536
Normal
0.1
1022
Normal
0.1
392
Normal
0.1
878
Normal
0.1
212
Normal
0.1
1044
Normal
0.1
951
Tumor
0.1
737
Tumor
0.1
464
Normal
0.1
278
Normal
0.1
494
Normal
0.1
741
Tumor
0.1
132
Normal
0.1
298
Normal
0.1
414
Normal
0.1
745
Tumor
0.1
455
Tumor
0.0
314
Normal
0.0
283
Tumor
0.0
526
Normal
0.0
311
Tumor
0.0
564
Normal
0.0
461
Tumor
0.0
546
Normal
0.0
391
Tumor
0.0
142
Normal
0.0
344
Normal
0.0
912
Normal
0.0
353
Tumor
0.0
262
Normal
0.0
744
Normal
0.0
574
Normal
0.0
943
Tumor
0.0
148
Normal
0.0
648
Normal
0.0
966
Normal
0.0
111
Normal
0.0
342
Normal
0.0
468
Normal
0.0
524
Normal
0.0
187
Tumor
0.0
857
Tumor
0.0
466
Normal
0.0
332
Normal
N/A
258
Normal
0.0
721
Tumor
0.0
162
Normal
0.0
361
Tumor
0.0
1026
Normal
0.0
534
Normal
0.0
498
Normal
0.0
724
Normal
0.0
272
Normal
0.0
384
Normal
0.0
394
Normal
0.0
516
Normal
0.0
444
Normal
-0.1
1032
Normal
-0.1
188
Normal
-0.1
572
Normal
-0.1
967
Tumor
-0.1
515
Tumor
-0.1
268
Normal
-0.1
386
Normal
-0.1
1027
Tumor
-0.1
362
Normal
-0.1
538
Normal
-0.1
312
Normal
-0.1
124
Normal
-0.1
554
Normal
-0.1
186
Normal
-0.1
452
Normal
-0.1
727
Tumor
-0.1
224
Normal
-0.1
138
Normal
-0.1
434
Normal
-0.1
487
Tumor
-0.1
172
Normal
-0.1
383
Tumor
-0.1
421
Tumor
-0.1
911
Tumor
-0.1
573
Tumor
-0.1
257
Tumor
-0.1
341
Tumor
-0.1
813
Tumor
-0.1
664
Normal
-0.1
477
Tumor
-0.1
662
Normal
-0.1
865
Tumor
-0.1
427
Tumor
-0.1
313
Tumor
-0.1
423
Tumor
-0.1
563
Tumor
-0.1
285
Tumor
-0.1
533
Tumor
-0.1
1042
Normal
-0.1
537
Tumor
-0.1
192
Normal
-0.2
525
Tumor
-0.2
195
Tumor
-0.2
492
Normal
-0.2
685
Tumor
-0.2
131
Tumor
-0.2
881
Tumor
-0.2
975
Tumor
-0.2
814
Normal
-0.2
355
Tumor
-0.2
433
Tumor
-0.2
817
Tumor
-0.2
965
Tumor
-0.2
666
Normal
-0.2
425
Tumor
-0.2
861
Tumor
-0.2
957
Tumor
-0.2
141
Tumor
-0.2
567
Tumor
-0.2
867
Tumor
-0.2
1025
Tumor
-0.3
271
Tumor
-0.3
366
Normal
-0.3
357
Tumor
-0.3
535
Tumor
-0.3
883
Tumor
-0.3
217
Tumor
-0.3
331
Tumor
-0.3
713
Tumor
-0.3
267
Tumor
-0.3
491
Tumor
-0.3
171
Tumor
-0.3
823
Tumor
-0.3
451
Tumor
-0.3
447
Tumor
-0.3
672
Normal
-0.3
375
Tumor
-0.3
125
Tumor
-0.3
553
Tumor
-0.3
557
Tumor
-0.4
1031
Tumor
-0.4
261
Tumor
-0.4
665
Tumor
-0.4
983
Tumor
-0.4
483
Tumor
-0.4
385
Tumor
-0.4
185
Tumor
-0.4
223
Tumor
-0.4
1043
Tumor
-0.4
641
Tumor
-0.4
221
Tumor
-0.4
1021
Tumor
-0.4
297
Tumor
-0.4
431
Tumor
-0.4
743
Tumor
-0.4
467
Tumor
-0.4
977
Tumor
-0.5
473
Tumor
-0.5
435
Tumor
-0.5
367
Tumor
-0.5
231
Tumor
-0.5
1041
Tumor
-0.5
161
Tumor
-0.5
411
Tumor
-0.5
963
Tumor
-0.5
227
Tumor
-0.5
497
Tumor
-0.5
815
Tumor
-0.5
135
Tumor
-0.5
443
Tumor
-0.5
363
Tumor
-0.5
715
Tumor
-0.5
343
Tumor
-0.5
493
Tumor
-0.5
571
Tumor
-0.6
663
Tumor
-0.6
351
Tumor
-0.6
877
Tumor
-0.6
112
Tumor
-0.6
661
Tumor
-0.7
277
Tumor
-0.7
695
Tumor
-0.7
671
Tumor
-0.8
915
Tumor
-0.8
523
Tumor
-0.8
213
Tumor
-0.8
517
Tumor
-1.0
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
