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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Glial cells:
Not detected
Neuronal cells:
Low
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
146.2
nTPM
HPA Brain:
78.8
nTPM
GTEx:
146.2
nTPM
FANTOM5:
141.6
Scaled Tags Per Million
Pig:
132.3
nTPM
Mouse:
316.3
nTPM
Allen mouse:
23.5
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Antibody HPA013136
Antibody HPA074618
Glial cells
Not detected
Not detected
Neuronal cells
Low
Low
HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
78.8
Sample id
Sample description
nTPM
Hippocampus nTPM: 53.7
1898
Male, age 80, left hemisphere
80.1
2621
Female, age 67, right hemisphere
60.8
1855
Male, age 76, left hemisphere
58.4
1911
Female, age 85, right hemisphere
49.1
2148
Female, age 91, left hemisphere
44.5
2529
Female, age 94, left hemisphere
29.2
Dentate gyrus nTPM: 65.5
1927
Female, age 91, both hemispheres
93.8
2530
Female, age 94, left hemisphere
70.1
2010
Male, age 76, both hemispheres
69.6
2528
Male, age 74, both hemispheres
69.0
2246
Female, age 85, both hemispheres
45.5
2531
Female, age 67, both hemispheres
45.1
Entorhinal gyrus nTPM: 50.8
1938
Female, age 85, left hemisphere
66.7
2764
Male, age 80, right hemisphere
64.9
1787
Male, age 76, left hemisphere
58.8
2613
Female, age 94, left hemisphere
53.4
2686
Male, age 75, right hemisphere
30.6
2117
Female, age 91, right hemisphere
30.3
Hippocampus, CA1 nTPM: 75.1
2749
Male, age 80, left hemisphere
108.8
2527
Male, age 74, both hemispheres
71.6
2082
Female, age 91, right hemisphere
69.4
1873
Female, age 85, both hemispheres
68.1
2045
Male, age 76, both hemispheres
57.5
Hippocampus, CA2 nTPM: 69.7
2249
Male, age 74, both hemispheres
104.5
1892
Male, age 76, both hemispheres
104.1
1963
Male, age 80, left hemisphere
71.5
2437
Female, age 94, left hemisphere
55.6
1940
Female, age 85, left hemisphere
41.9
2113
Female, age 91, right hemisphere
40.9
Hippocampus, CA3 nTPM: 76.8
2436
Male, age 74, both hemispheres
140.8
2137
Male, age 80, left hemisphere
90.9
1867
Male, age 76, both hemispheres
71.6
2620
Female, age 94, left hemisphere
70.0
1891
Female, age 85, both hemispheres
47.7
2861
Female, age 67, both hemispheres
39.6
Parahippocampal cortex nTPM: 59.5
1850
Male, age 80, both hemispheres
82.8
1990
Female, age 91, right hemisphere
73.7
2532
Female, age 72, left hemisphere
70.6
1933
Female, age 85, both hemispheres
65.8
2245
Female, age 91, both hemispheres
64.1
2250
Female, age 67, right hemisphere
64.1
2018
Male, age 76, both hemispheres
62.0
2693
Female, age 94, both hemispheres
57.8
2622
Female, age 67, right hemisphere
42.6
2692
Male, age 74, both hemispheres
11.6
Perirhinal gyrus nTPM: 78.8
1847
Female, age 91, left hemisphere
93.3
1841
Female, age 85, right hemisphere
83.4
2521
Female, age 94, right hemisphere
78.7
1794
Male, age 80, right hemisphere
74.9
2848
Male, age 76, right hemisphere
63.6
Subiculum nTPM: 40.0
1901
Male, age 80, both hemispheres
64.9
1977
Female, age 85, both hemispheres
59.7
2619
Male, age 74, both hemispheres
40.0
2729
Female, age 91, right hemisphere
35.1
2042
Male, age 76, both hemispheres
30.2
2438
Female, age 94, left hemisphere
10.3
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
146.2
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 146.2
Samples: 197
Max nTPM: 414.5
Min nTPM: 18.2
Std nTPM: 86.4
Median nTPM: 126.0
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
414.5
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
384.0
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
369.4
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
365.9
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
353.8
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
349.2
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
327.4
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
322.3
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
321.7
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
314.5
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
313.9
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
307.8
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
305.9
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
300.5
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
296.8
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
295.6
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
294.4
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
289.3
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
289.1
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
282.7
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
269.0
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
261.0
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
260.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
257.2
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
256.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
254.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
253.2
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
249.5
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
244.9
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
244.3
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
233.7
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
231.3
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
227.8
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
227.7
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
223.4
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
222.0
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
219.9
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
216.5
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
216.0
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
216.0
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
214.6
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
214.1
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
213.8
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
213.6
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
212.4
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
212.0
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
211.9
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
211.8
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
210.5
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
208.4
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
208.1
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
204.6
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
204.1
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
203.1
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
194.3
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
194.0
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
192.7
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
189.9
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
188.8
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
188.7
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
184.1
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
182.9
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
182.2
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
179.2
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
173.0
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
171.1
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
169.5
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
168.4
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
168.1
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
167.3
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
166.8
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
165.8
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
164.7
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
163.5
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
163.4
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
161.7
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
161.4
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
160.1
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
157.3
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
152.9
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
152.4
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
152.4
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
148.0
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
145.1
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
142.3
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
141.6
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
141.3
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
141.0
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
140.4
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
139.3
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
139.2
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
138.4
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
136.3
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
133.0
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
131.6
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
128.9
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
128.4
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
127.3
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
126.0
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
124.3
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
124.0
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
122.2
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
119.2
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
117.8
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
117.2
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
114.8
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
113.6
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
113.5
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
111.5
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
110.0
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
109.3
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
108.1
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
106.1
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
104.6
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
103.9
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
103.2
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
102.5
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
102.2
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
101.8
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
100.5
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
98.6
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
95.4
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
94.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
94.4
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
94.1
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
91.6
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
91.5
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
90.0
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
89.9
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
89.5
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
89.4
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
88.9
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
88.3
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
87.7
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
84.0
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
82.9
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
82.5
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
81.5
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
79.0
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
76.6
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
76.0
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
75.8
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
75.7
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
75.1
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
74.6
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
74.6
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
72.9
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
72.5
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
72.3
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
71.6
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
71.5
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
71.4
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
71.0
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
70.9
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
70.2
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
69.9
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
67.6
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
66.9
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
66.9
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
66.6
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
66.0
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
66.0
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
64.1
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
63.5
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
62.8
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
61.7
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
61.3
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
60.4
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
60.1
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
60.1
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
59.9
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
59.2
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
57.1
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
56.8
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
56.7
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
56.5
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
56.0
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
55.8
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
55.6
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
55.4
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
54.0
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
52.7
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
51.1
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
48.5
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
46.9
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
46.8
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
46.7
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
43.7
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
43.0
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
40.8
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
40.8
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
39.2
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
38.5
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
30.7
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
26.4
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
25.5
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
18.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
316.3
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 316.3
Samples: 4
Max nTPM: 385.0
Min nTPM: 256.8
Sample A
Male
323.4
Sample B
Male
385.0
Sample C
Female
300.1
Sample D
Female
256.8
Hippocampal formation nTPM: 293.2
Samples: 4
Max nTPM: 331.4
Min nTPM: 276.9
Sample A
Male
331.4
Sample B
Male
276.9
Sample C
Female
282.0
Sample D
Female
282.4
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.