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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PIP4K2C is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
42.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
38.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
36.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
34.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
34.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
33.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
28.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
27.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
27.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
26.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
23.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
23.5
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
22.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
22.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
22.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
22.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
21.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
21.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
20.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
20.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
19.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
19.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
18.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
18.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
18.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
18.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
17.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
17.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
16.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
16.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
16.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
16.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
16.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
16.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
16.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
16.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
15.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
15.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
15.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
15.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
15.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
15.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
15.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
15.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
15.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
14.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
14.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
14.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
14.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
14.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
14.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
13.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
13.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
13.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
13.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
13.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
13.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
13.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
13.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
12.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
12.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
12.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
12.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
12.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
12.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
12.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
12.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
11.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
11.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.8
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
11.7
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
11.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
11.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
11.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
11.3
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
11.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
11.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
11.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
11.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
11.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
10.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
10.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
10.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
10.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
10.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
10.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
10.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
10.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
10.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
10.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
10.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
10.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
10.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
9.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
9.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
9.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
9.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
9.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
9.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
9.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
9.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
9.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
9.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
8.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
8.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
8.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
8.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
8.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
8.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.0
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
7.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
7.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
7.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
7.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.7
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
7.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
7.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
7.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
7.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.2
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
7.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
6.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
6.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
6.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
6.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
6.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
6.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.0
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
5.9
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.9
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
5.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
5.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
5.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
5.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
5.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.9
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
4.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
4.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.2
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
4.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
4.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
4.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
4.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
4.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.0
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
3.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
3.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.7
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
2.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
2.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.8
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PIP4K2C is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.9
Number of samples
231
Samples
Sample
Description
TPM
DO45299
0 years, female, NA, stage:1, alive, 1440 days
35.2
DO45263
0 years, male, NA, stage:3, dead, 270 days
34.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
32.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
28.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
28.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
27.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
23.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
22.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
22.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
22.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
20.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
19.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
19.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
19.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
18.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
18.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
18.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
17.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
17.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
17.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
16.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
16.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
15.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
15.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
15.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
14.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
13.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
13.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
13.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
12.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
12.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
11.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
11.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
11.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
11.4
DO48704
0 years, female, NA, stage:3, alive, 750 days
11.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
11.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
10.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
10.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
10.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
10.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
10.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
10.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
10.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
10.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
10.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
9.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.7
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
9.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
9.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
9.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
8.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
8.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
8.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
8.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
8.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
8.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
8.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
7.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
7.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
7.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
7.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
7.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
7.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
7.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
7.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
6.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
6.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.6
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
6.6
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.3
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
6.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
6.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
6.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
5.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
5.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
5.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
5.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
5.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
5.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.0
DO45241
0 years, male, NA, stage:1, alive, 1080 days
5.0
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
4.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
813
Tumor
2.9
873
Tumor
2.1
814
Normal
2.1
527
Tumor
1.3
1027
Tumor
0.9
957
Tumor
0.8
463
Tumor
0.8
697
Tumor
0.8
455
Tumor
0.7
745
Tumor
0.7
125
Tumor
0.7
647
Tumor
0.7
1013
Tumor
0.6
737
Tumor
0.6
257
Tumor
0.6
513
Tumor
0.6
145
Tumor
0.6
573
Tumor
0.6
1021
Tumor
0.5
135
Tumor
0.5
967
Tumor
0.5
953
Tumor
0.5
545
Tumor
0.4
777
Tumor
0.4
385
Tumor
0.4
635
Tumor
0.4
351
Tumor
0.4
223
Tumor
0.4
863
Tumor
0.4
141
Tumor
0.4
571
Tumor
0.4
395
Tumor
0.4
123
Tumor
0.3
713
Tumor
0.3
267
Tumor
0.3
497
Tumor
0.3
685
Tumor
0.3
447
Tumor
0.3
553
Tumor
0.3
741
Tumor
0.3
641
Tumor
0.3
851
Tumor
0.3
147
Tumor
0.3
627
Tumor
0.3
221
Tumor
0.3
925
Tumor
0.3
137
Tumor
0.3
365
Tumor
0.3
367
Tumor
0.3
297
Tumor
0.2
387
Tumor
0.2
1031
Tumor
0.2
487
Tumor
0.2
311
Tumor
0.2
361
Tumor
0.2
261
Tumor
0.2
937
Tumor
0.2
1042
Normal
0.2
1025
Tumor
0.2
943
Tumor
0.2
375
Tumor
0.2
283
Tumor
0.2
132
Normal
0.2
921
Tumor
0.2
515
Tumor
0.2
917
Tumor
0.2
313
Tumor
0.2
411
Tumor
0.2
883
Tumor
0.2
353
Tumor
0.2
923
Tumor
0.2
231
Tumor
0.2
171
Tumor
0.2
965
Tumor
0.2
916
Normal
0.2
435
Tumor
0.2
557
Tumor
0.2
327
Tumor
0.2
786
Normal
0.1
533
Tumor
0.1
357
Tumor
0.1
443
Tumor
0.1
481
Tumor
0.1
955
Tumor
0.1
1045
Tumor
0.1
1022
Normal
0.1
138
Normal
0.1
126
Normal
0.1
187
Tumor
0.1
431
Tumor
0.1
868
Normal
0.1
537
Tumor
0.1
924
Normal
0.1
981
Tumor
0.1
617
Tumor
0.1
978
Normal
0.1
136
Normal
0.1
756
Normal
0.1
491
Tumor
0.1
271
Tumor
0.1
172
Normal
0.1
956
Normal
0.1
436
Normal
0.1
471
Tumor
0.1
188
Normal
0.1
466
Normal
0.1
343
Tumor
0.1
857
Tumor
0.1
523
Tumor
0.1
162
Normal
0.1
355
Tumor
0.1
721
Tumor
0.1
884
Normal
0.1
422
Normal
0.1
1043
Tumor
0.1
824
Normal
0.1
191
Tumor
0.1
525
Tumor
0.1
212
Normal
0.1
383
Tumor
0.1
278
Normal
0.1
918
Normal
0.1
312
Normal
0.1
467
Tumor
0.1
976
Normal
0.0
421
Tumor
0.0
867
Tumor
0.0
958
Normal
0.0
912
Normal
0.0
616
Normal
0.0
975
Tumor
0.0
1032
Normal
0.0
877
Tumor
0.0
964
Normal
0.0
428
Normal
0.0
483
Tumor
0.0
952
Normal
0.0
966
Normal
0.0
858
Normal
0.0
563
Tumor
0.0
366
Normal
0.0
913
Tumor
0.0
738
Normal
0.0
186
Normal
0.0
423
Tumor
0.0
648
Normal
0.0
944
Normal
0.0
665
Tumor
0.0
258
Normal
0.0
277
Tumor
0.0
462
Normal
0.0
1026
Normal
0.0
755
Tumor
0.0
852
Normal
0.0
493
Tumor
0.0
426
Normal
0.0
628
Normal
0.0
432
Normal
0.0
416
Normal
0.0
456
Normal
0.0
938
Normal
0.0
146
Normal
0.0
433
Tumor
0.0
386
Normal
0.0
746
Normal
0.0
728
Normal
0.0
514
Normal
0.0
818
Normal
0.0
484
Normal
0.0
113
Tumor
0.0
192
Normal
0.0
982
Normal
0.0
785
Tumor
0.0
518
Normal
0.0
723
Tumor
0.0
664
Normal
0.0
464
Normal
0.0
492
Normal
0.0
474
Normal
0.0
618
Normal
0.0
127
Tumor
0.0
478
Normal
0.0
663
Tumor
0.0
112
Tumor
0.0
217
Tumor
0.0
968
Normal
0.0
224
Normal
0.0
716
Normal
0.0
1014
Normal
0.0
911
Tumor
0.0
882
Normal
0.0
1016
Normal
0.0
1015
Tumor
0.0
564
Normal
0.0
823
Tumor
0.0
298
Normal
0.0
535
Tumor
0.0
954
Normal
0.0
528
Normal
0.0
262
Normal
0.0
615
Tumor
0.0
984
Normal
0.0
914
Normal
0.0
114
Normal
0.0
1028
Normal
0.0
472
Normal
0.0
111
Normal
0.0
881
Tumor
0.0
642
Normal
0.0
727
Tumor
0.0
142
Normal
0.0
128
Normal
-0.1
915
Tumor
-0.1
874
Normal
-0.1
384
Normal
-0.1
534
Normal
-0.1
218
Normal
-0.1
362
Normal
-0.1
866
Normal
-0.1
444
Normal
-0.1
434
Normal
-0.1
778
Normal
-0.1
482
Normal
-0.1
666
Normal
-0.1
448
Normal
-0.1
816
Normal
-0.1
272
Normal
-0.1
414
Normal
-0.1
148
Normal
-0.1
468
Normal
-0.1
268
Normal
-0.1
1044
Normal
-0.1
864
Normal
-0.1
862
Normal
-0.1
214
Normal
-0.1
662
Normal
-0.1
465
Tumor
-0.1
285
Tumor
-0.1
742
Normal
-0.1
394
Normal
-0.1
445
Tumor
-0.1
516
Normal
-0.1
446
Normal
-0.1
228
Normal
-0.1
494
Normal
-0.1
922
Normal
-0.1
722
Normal
-0.1
1046
Normal
-0.1
284
Normal
-0.1
376
Normal
-0.1
425
Tumor
-0.1
526
Normal
-0.1
424
Normal
-0.1
328
Normal
-0.1
743
Tumor
-0.1
415
Tumor
-0.1
671
Tumor
-0.1
558
Normal
-0.1
356
Normal
-0.1
388
Normal
-0.1
396
Normal
-0.1
196
Normal
-0.1
368
Normal
-0.1
461
Tumor
-0.1
926
Normal
-0.1
661
Tumor
-0.1
1041
Tumor
-0.1
131
Tumor
-0.1
488
Normal
-0.1
672
Normal
-0.1
686
Normal
-0.1
983
Tumor
-0.1
817
Tumor
-0.1
195
Tumor
-0.1
714
Normal
-0.1
222
Normal
-0.1
161
Tumor
-0.1
878
Normal
-0.1
865
Tumor
-0.1
124
Normal
-0.2
546
Normal
-0.2
498
Normal
-0.2
286
Normal
-0.2
213
Tumor
-0.2
232
Normal
-0.2
452
Normal
-0.2
574
Normal
-0.2
696
Normal
-0.2
861
Tumor
-0.2
314
Normal
-0.2
567
Tumor
-0.2
698
Normal
-0.2
185
Tumor
-0.2
636
Normal
-0.2
538
Normal
-0.2
412
Normal
-0.2
568
Normal
-0.2
451
Tumor
-0.2
211
Tumor
-0.2
477
Tumor
-0.2
554
Normal
-0.2
358
Normal
-0.2
427
Tumor
-0.2
352
Normal
-0.2
524
Normal
-0.2
815
Tumor
-0.2
364
Normal
-0.2
393
Tumor
-0.2
331
Tumor
-0.2
392
Normal
-0.2
354
Normal
-0.2
572
Normal
-0.2
715
Tumor
-0.2
536
Normal
-0.2
342
Normal
-0.2
977
Tumor
-0.2
344
Normal
-0.2
951
Tumor
-0.3
332
Normal
-0.3
341
Tumor
-0.3
724
Normal
-0.3
963
Tumor
-0.3
363
Tumor
-0.3
695
Tumor
-0.3
473
Tumor
-0.4
744
Normal
-0.4
227
Tumor
-0.5
413
Tumor
-0.5
391
Tumor
-0.5
517
Tumor
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
