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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLK1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.2
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
67.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
47.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
45.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
41.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
41.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
38.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
35.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
31.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
29.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
28.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
25.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
25.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
25.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
24.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
23.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
23.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
23.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
23.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
20.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
20.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
19.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
19.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
19.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
18.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
16.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
16.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
15.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
15.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
14.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
14.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
14.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
14.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
13.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
12.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
12.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
12.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
12.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
12.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
11.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
11.6
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
11.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
11.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
11.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
10.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
10.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
10.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
10.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
10.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.1
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
10.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
10.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
9.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
9.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
8.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
8.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
8.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.1
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
8.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.0
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
7.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
7.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.5
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
7.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
7.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
6.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
6.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
6.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
6.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
6.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
5.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
5.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
5.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
5.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
4.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
4.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
4.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
4.7
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
4.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
4.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
4.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
4.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
3.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
3.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
3.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
3.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
3.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
3.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
3.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
3.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
3.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
3.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
3.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
3.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
3.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
2.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
2.8
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
2.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
2.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
2.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
2.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
2.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
1.6
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
1.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
1.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
1.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.2
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
1.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
1.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
0.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
0.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.6
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.6
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.6
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.6
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.4
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
0.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLK1 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.5
Number of samples
231
Samples
Sample
Description
TPM
DO45127
0 years, male, NA, stage:3, dead, 420 days
31.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
31.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
24.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
22.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
20.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
18.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
16.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
15.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
14.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
13.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
13.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
13.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
12.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.5
DO50778
0 years, male, NA, stage:4, alive, 630 days
11.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
11.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
10.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
9.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
9.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
8.9
DO48723
0 years, male, NA, stage:1, alive, 600 days
8.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
8.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
8.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.0
DO45165
0 years, male, NA, stage:2, alive, 690 days
7.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
7.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
7.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
6.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.5
DO45263
0 years, male, NA, stage:3, dead, 270 days
6.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
6.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
5.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
5.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
5.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
5.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
5.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
5.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
4.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
4.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
4.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
4.5
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
4.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
4.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
4.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
4.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
3.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
3.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
3.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
3.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
3.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
3.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
3.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
3.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
3.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
3.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
3.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
2.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
2.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
2.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
2.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
2.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
2.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
2.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
2.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
2.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
2.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
2.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
2.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
2.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
2.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
2.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
2.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.1
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
2.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
1.9
DO48706
0 years, male, NA, stage:2, alive, 870 days
1.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
1.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
1.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
1.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
1.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
1.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
1.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
1.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
1.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
1.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
1.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
1.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
1.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
1.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
1.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
1.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
1.4
DO45303
0 years, female, NA, stage:3, alive, 990 days
1.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
1.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
1.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
1.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
1.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
1.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
1.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
1.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
1.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
1.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
1.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
1.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
1.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
1.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
1.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
1.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
1.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
1.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
1.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
1.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
1.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
0.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.7
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
351
Tumor
1.6
965
Tumor
1.5
162
Normal
1.2
435
Tumor
1.1
211
Tumor
1.1
186
Normal
1.1
172
Normal
1.1
146
Normal
1.1
786
Normal
1.1
132
Normal
1.0
357
Tumor
1.0
123
Tumor
1.0
756
Normal
0.9
145
Tumor
0.9
697
Tumor
0.9
148
Normal
0.9
882
Normal
0.9
142
Normal
0.8
663
Tumor
0.8
967
Tumor
0.8
537
Tumor
0.8
313
Tumor
0.7
497
Tumor
0.7
716
Normal
0.7
912
Normal
0.7
138
Normal
0.6
283
Tumor
0.6
127
Tumor
0.6
343
Tumor
0.5
331
Tumor
0.5
914
Normal
0.5
364
Normal
0.5
884
Normal
0.5
862
Normal
0.5
957
Tumor
0.5
746
Normal
0.5
484
Normal
0.5
863
Tumor
0.5
878
Normal
0.5
136
Normal
0.5
661
Tumor
0.5
277
Tumor
0.4
1046
Normal
0.4
285
Tumor
0.4
491
Tumor
0.4
535
Tumor
0.4
1043
Tumor
0.4
866
Normal
0.4
865
Tumor
0.4
778
Normal
0.4
527
Tumor
0.4
533
Tumor
0.4
328
Normal
0.4
545
Tumor
0.4
696
Normal
0.4
487
Tumor
0.3
311
Tumor
0.3
188
Normal
0.3
432
Normal
0.3
713
Tumor
0.3
342
Normal
0.2
698
Normal
0.2
963
Tumor
0.2
864
Normal
0.2
356
Normal
0.2
341
Tumor
0.2
297
Tumor
0.2
327
Tumor
0.2
125
Tumor
0.2
488
Normal
0.2
538
Normal
0.1
284
Normal
0.1
224
Normal
0.1
415
Tumor
0.1
873
Tumor
0.1
647
Tumor
0.1
868
Normal
0.1
493
Tumor
0.1
446
Normal
0.1
671
Tumor
0.1
227
Tumor
0.1
354
Normal
0.1
416
Normal
0.1
448
Normal
0.1
358
Normal
0.1
498
Normal
0.1
332
Normal
0.0
411
Tumor
0.0
113
Tumor
0.0
666
Normal
0.0
975
Tumor
0.0
352
Normal
0.0
314
Normal
0.0
344
Normal
-0.1
445
Tumor
-0.1
494
Normal
-0.1
434
Normal
-0.1
867
Tumor
-0.1
444
Normal
-0.1
665
Tumor
-0.1
112
Tumor
-0.1
433
Tumor
-0.1
228
Normal
-0.1
976
Normal
-0.1
447
Tumor
-0.1
436
Normal
-0.1
814
Normal
-0.1
353
Tumor
-0.1
722
Normal
-0.2
958
Normal
-0.2
664
Normal
-0.2
312
Normal
-0.2
431
Tumor
-0.2
286
Normal
-0.2
648
Normal
-0.2
546
Normal
-0.2
672
Normal
-0.2
1044
Normal
-0.2
298
Normal
-0.2
534
Normal
-0.2
714
Normal
-0.2
412
Normal
-0.2
128
Normal
-0.2
278
Normal
-0.3
1045
Tumor
-0.3
911
Tumor
-0.3
355
Tumor
-0.3
111
Normal
-0.3
966
Normal
-0.3
715
Tumor
-0.3
223
Tumor
-0.3
492
Normal
-0.3
913
Tumor
-0.4
968
Normal
-0.4
212
Normal
-0.4
114
Normal
-0.4
553
Tumor
-0.4
124
Normal
-0.4
964
Normal
-0.4
483
Tumor
-0.5
883
Tumor
-0.5
861
Tumor
-0.5
171
Tumor
-0.5
126
Normal
-0.5
662
Normal
-0.5
874
Normal
-0.5
443
Tumor
-0.5
785
Tumor
-0.5
554
Normal
-0.6
755
Tumor
-0.6
363
Tumor
-0.6
745
Tumor
-0.6
536
Normal
-0.7
813
Tumor
-0.7
881
Tumor
-0.7
528
Normal
-0.8
161
Tumor
-0.8
187
Tumor
-0.8
695
Tumor
-0.9
721
Tumor
-1.0
185
Tumor
-1.0
135
Tumor
-1.0
137
Tumor
-1.1
877
Tumor
-1.1
777
Tumor
-1.1
686
Normal
-1.2
131
Tumor
-1.4
685
Tumor
-1.5
141
Tumor
-1.6
147
Tumor
-2.2
471
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
473
Tumor
N/A
232
Normal
N/A
474
Normal
N/A
477
Tumor
N/A
478
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
365
Tumor
N/A
366
Normal
N/A
367
Tumor
N/A
368
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
257
Tumor
N/A
258
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
937
Tumor
N/A
817
Tumor
N/A
938
Normal
N/A
818
Normal
N/A
261
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
387
Tumor
N/A
267
Tumor
N/A
388
Normal
N/A
268
Normal
N/A
943
Tumor
N/A
823
Tumor
N/A
944
Normal
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
955
Tumor
N/A
956
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
723
Tumor
N/A
724
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1042
Normal
N/A
1041
Tumor
N/A
851
Tumor
N/A
852
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
858
Normal
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
983
Tumor
N/A
742
Normal
N/A
984
Normal
N/A
743
Tumor
N/A
744
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
513
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
641
Tumor
N/A
642
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
564
Normal
N/A
567
Tumor
N/A
568
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
452
Normal
N/A
573
Tumor
N/A
574
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
463
Tumor
N/A
222
Normal
N/A
464
Normal
N/A
465
Tumor
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
