We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ANPEP is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
157.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
895.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
873.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
719.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
663.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
640.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
631.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
586.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
563.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
550.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
546.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
524.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
507.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
506.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
470.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
458.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
451.8
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
438.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
401.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
400.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
399.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
375.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
358.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
347.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
346.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
345.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
338.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
330.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
330.5
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
322.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
319.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
319.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
312.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
312.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
311.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
308.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
304.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
303.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
303.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
298.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
296.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
296.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
292.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
292.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
285.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
273.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
272.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
272.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
271.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
266.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
266.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
265.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
264.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
258.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
258.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
255.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
254.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
252.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
251.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
250.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
250.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
249.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
246.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
246.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
244.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
243.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
235.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
233.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
231.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
231.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
230.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
229.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
229.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
228.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
226.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
226.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
224.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
222.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
221.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
218.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
218.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
217.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
216.1
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
213.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
211.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
211.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
210.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
209.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
207.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
205.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
204.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
204.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
202.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
200.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
194.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
191.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
191.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
189.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
189.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
188.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
184.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
184.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
181.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
180.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
180.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
179.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
177.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
176.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
174.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
174.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
172.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
172.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
172.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
172.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
170.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
170.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
169.9
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
169.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
169.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
168.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
167.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
166.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
165.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
165.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
164.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
163.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
161.0
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
159.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
157.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
156.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
156.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
155.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
154.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
154.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
153.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
153.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
152.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
151.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
150.9
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
150.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
148.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
147.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
147.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
146.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
143.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
143.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
141.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
141.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
140.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
140.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
140.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
139.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
139.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
138.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
138.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
138.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
136.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
135.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
135.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
134.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
133.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
133.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
132.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
131.2
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
130.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
130.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
129.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
129.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
128.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
128.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
128.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
127.7
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
127.4
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
125.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
125.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
125.3
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
124.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
124.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
124.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
124.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
123.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
123.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
121.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
120.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
120.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
118.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
118.7
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
117.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
116.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
116.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
116.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
115.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
115.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
115.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
115.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
114.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
114.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
114.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
114.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
114.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
113.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
112.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
111.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
111.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
110.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
109.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
109.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
108.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
108.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
108.4
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
108.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
107.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
106.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
106.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
105.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
105.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
104.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
103.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
102.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
101.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
100.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
100.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
100.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
100.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
100.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
99.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
99.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
98.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
97.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
96.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
96.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
96.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
95.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
94.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
94.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
93.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
93.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
93.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
93.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
92.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
91.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
91.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
89.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
88.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
87.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
87.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
87.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
85.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
85.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
85.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
85.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
84.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
84.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
84.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
83.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
83.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
83.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
83.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
82.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
81.9
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
81.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
80.9
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
80.9
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
80.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
80.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
80.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
77.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
76.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
75.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
75.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
75.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
75.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
74.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
74.9
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
74.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
73.7
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
73.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
72.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
71.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
71.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
70.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
69.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
69.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
68.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
68.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
67.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
67.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
67.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
66.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
66.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
65.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
65.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
64.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
63.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
63.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
62.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
62.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
61.3
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
60.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
60.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
59.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
59.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
56.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
54.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
52.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
51.8
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
50.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
50.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
50.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
50.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
50.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
49.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
49.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
49.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
48.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
48.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
48.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
47.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
47.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
47.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
47.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
46.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
46.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
45.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
45.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
44.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
44.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
44.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
44.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
42.4
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
42.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
41.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
41.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
40.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
39.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
39.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
38.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
37.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
36.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
35.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
33.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
33.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
32.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
31.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
30.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
30.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
30.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
30.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
29.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
28.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
28.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
26.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
26.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
21.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
19.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
14.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
14.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
5.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ANPEP is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
148.1
Number of samples
231
Samples
Sample
Description
TPM
DO48682
0 years, female, NA, stage:3, dead, 120 days
1267.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
714.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
566.2
DO45287
0 years, male, NA, stage:1, alive, 390 days
466.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
415.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
406.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
404.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
403.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
398.5
DO48701
0 years, male, NA, stage:2, alive, 780 days
395.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
355.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
351.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
342.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
336.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
323.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
321.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
310.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
309.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
306.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
300.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
284.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
281.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
270.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
266.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
265.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
264.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
262.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
261.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
260.7
DO50799
0 years, female, NA, stage:2, alive, 540 days
260.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
259.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
253.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
249.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
249.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
247.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
244.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
243.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
241.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
241.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
239.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
236.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
236.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
234.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
232.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
228.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
226.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
225.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
222.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
221.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
218.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
208.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
200.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
198.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
190.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
189.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
188.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
184.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
183.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
180.9
DO48746
0 years, male, NA, stage:3, alive, 570 days
177.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
177.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
176.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
172.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
169.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
166.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
166.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
165.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
165.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
162.4
DO45115
0 years, male, NA, stage:2, alive, 840 days
161.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
161.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
160.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
157.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
156.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
155.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
155.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
150.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
150.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
150.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
149.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
147.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
146.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
145.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
144.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
143.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
141.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
141.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
140.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
138.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
138.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
138.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
134.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
133.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
133.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
133.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
131.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
130.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
127.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
127.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
125.6
DO50814
0 years, male, NA, stage:3, alive, 420 days
122.3
DO48741
0 years, male, NA, stage:3, alive, 240 days
122.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
121.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
121.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
120.9
DO45289
0 years, female, NA, stage:3, alive, 360 days
120.9
DO45273
0 years, male, NA, stage:2, alive, 480 days
120.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
120.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
119.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
119.1
DO50822
0 years, male, NA, stage:2, alive, 510 days
118.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
118.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
118.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
118.0
DO45223
0 years, male, NA, stage:4, alive, 1020 days
117.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
116.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
114.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
112.7
DO23545
0 years, male, NA, stage:2, dead, 570 days
111.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
109.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
109.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
109.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
108.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
108.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
107.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
107.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
106.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
106.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
104.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
104.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
102.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
102.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
101.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
101.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
101.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
100.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
100.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
99.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
97.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
97.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
96.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
96.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
95.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
95.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
94.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
94.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
93.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
93.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
92.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
91.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
91.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
90.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
90.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
90.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
90.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
89.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
89.3
DO50850
0 years, male, NA, stage:3, alive, 720 days
88.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
87.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
87.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
87.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
87.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
86.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
86.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
84.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
84.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
84.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
83.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
82.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
81.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
79.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
78.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
78.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
77.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
77.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
77.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
76.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
73.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
71.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
70.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
69.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
69.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
69.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
69.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
68.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
68.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
66.6
DO45127
0 years, male, NA, stage:3, dead, 420 days
65.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
64.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
63.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
63.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
63.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
62.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
61.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
61.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
60.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
57.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
54.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
54.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
53.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
52.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
50.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
49.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
47.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
47.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
46.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
44.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
44.0
DO45117
0 years, female, NA, stage:2, dead, 1110 days
43.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
42.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
42.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
39.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
39.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
38.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
38.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
37.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
37.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
36.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
36.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
35.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
35.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
29.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
24.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
23.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
22.7
DO23523
0 years, male, NA, stage:3, alive, 1080 days
20.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
19.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
863
Tumor
2.2
413
Tumor
1.6
513
Tumor
1.3
135
Tumor
1.3
743
Tumor
1.2
777
Tumor
1.2
461
Tumor
1.1
357
Tumor
1.1
393
Tumor
1.1
713
Tumor
1.0
387
Tumor
1.0
131
Tumor
1.0
627
Tumor
0.8
427
Tumor
0.7
815
Tumor
0.7
737
Tumor
0.7
271
Tumor
0.7
545
Tumor
0.7
471
Tumor
0.6
137
Tumor
0.6
222
Normal
0.5
227
Tumor
0.5
1025
Tumor
0.5
975
Tumor
0.5
877
Tumor
0.5
517
Tumor
0.5
553
Tumor
0.5
445
Tumor
0.4
297
Tumor
0.4
436
Normal
0.4
648
Normal
0.4
493
Tumor
0.4
967
Tumor
0.4
426
Normal
0.4
528
Normal
0.4
428
Normal
0.4
463
Tumor
0.4
1016
Normal
0.4
636
Normal
0.4
666
Normal
0.4
136
Normal
0.3
866
Normal
0.3
368
Normal
0.3
376
Normal
0.3
162
Normal
0.3
697
Tumor
0.3
617
Tumor
0.3
411
Tumor
0.3
414
Normal
0.3
161
Tumor
0.3
447
Tumor
0.3
432
Normal
0.3
954
Normal
0.3
664
Normal
0.3
232
Normal
0.3
514
Normal
0.3
573
Tumor
0.3
868
Normal
0.3
1026
Normal
0.3
938
Normal
0.3
446
Normal
0.3
361
Tumor
0.3
218
Normal
0.2
356
Normal
0.2
148
Normal
0.2
258
Normal
0.2
912
Normal
0.2
462
Normal
0.2
286
Normal
0.2
464
Normal
0.2
171
Tumor
0.2
926
Normal
0.2
332
Normal
0.2
568
Normal
0.2
132
Normal
0.2
616
Normal
0.2
883
Tumor
0.2
964
Normal
0.2
472
Normal
0.2
786
Normal
0.2
882
Normal
0.2
944
Normal
0.2
261
Tumor
0.2
723
Tumor
0.2
422
Normal
0.2
1014
Normal
0.2
937
Tumor
0.2
628
Normal
0.2
365
Tumor
0.2
816
Normal
0.2
494
Normal
0.2
142
Normal
0.2
396
Normal
0.2
111
Normal
0.2
515
Tumor
0.2
813
Tumor
0.2
448
Normal
0.2
526
Normal
0.2
1046
Normal
0.2
344
Normal
0.2
814
Normal
0.2
392
Normal
0.2
314
Normal
0.2
557
Tumor
0.2
918
Normal
0.2
482
Normal
0.2
394
Normal
0.2
451
Tumor
0.1
862
Normal
0.1
328
Normal
0.1
128
Normal
0.1
331
Tumor
0.1
298
Normal
0.1
778
Normal
0.1
686
Normal
0.1
785
Tumor
0.1
484
Normal
0.1
714
Normal
0.1
983
Tumor
0.1
984
Normal
0.1
965
Tumor
0.1
262
Normal
0.1
756
Normal
0.1
483
Tumor
0.1
663
Tumor
0.1
186
Normal
0.1
424
Normal
0.1
1044
Normal
0.1
474
Normal
0.1
564
Normal
0.1
952
Normal
0.1
728
Normal
0.1
618
Normal
0.1
662
Normal
0.1
285
Tumor
0.1
196
Normal
0.1
185
Tumor
0.1
488
Normal
0.1
327
Tumor
0.1
572
Normal
0.1
884
Normal
0.1
466
Normal
0.1
746
Normal
0.1
824
Normal
0.1
696
Normal
0.1
352
Normal
0.1
982
Normal
0.1
366
Normal
0.1
268
Normal
0.1
538
Normal
0.0
172
Normal
0.0
518
Normal
0.0
277
Tumor
0.0
456
Normal
0.0
563
Tumor
0.0
858
Normal
0.0
1021
Tumor
0.0
716
Normal
0.0
727
Tumor
0.0
742
Normal
0.0
212
Normal
0.0
914
Normal
0.0
951
Tumor
0.0
672
Normal
0.0
124
Normal
0.0
722
Normal
0.0
738
Normal
0.0
195
Tumor
0.0
497
Tumor
0.0
647
Tumor
0.0
851
Tumor
0.0
278
Normal
0.0
558
Normal
0.0
1032
Normal
0.0
924
Normal
0.0
527
Tumor
0.0
546
Normal
0.0
358
Normal
0.0
412
Normal
0.0
257
Tumor
0.0
114
Normal
0.0
343
Tumor
0.0
922
Normal
0.0
818
Normal
0.0
968
Normal
0.0
362
Normal
0.0
452
Normal
0.0
228
Normal
0.0
272
Normal
0.0
342
Normal
-0.1
125
Tumor
-0.1
978
Normal
-0.1
388
Normal
-0.1
878
Normal
-0.1
383
Tumor
-0.1
384
Normal
-0.1
744
Normal
-0.1
534
Normal
-0.1
923
Tumor
-0.1
1022
Normal
-0.1
126
Normal
-0.1
146
Normal
-0.1
925
Tumor
-0.1
1042
Normal
-0.1
138
Normal
-0.1
188
Normal
-0.1
916
Normal
-0.1
917
Tumor
-0.1
698
Normal
-0.1
492
Normal
-0.1
354
Normal
-0.1
574
Normal
-0.1
523
Tumor
-0.1
416
Normal
-0.1
864
Normal
-0.1
267
Tumor
-0.1
554
Normal
-0.1
434
Normal
-0.1
715
Tumor
-0.1
284
Normal
-0.1
467
Tumor
-0.1
312
Normal
-0.1
498
Normal
-0.1
214
Normal
-0.1
571
Tumor
-0.1
1028
Normal
-0.2
141
Tumor
-0.2
468
Normal
-0.2
956
Normal
-0.2
421
Tumor
-0.2
958
Normal
-0.2
217
Tumor
-0.2
741
Tumor
-0.2
533
Tumor
-0.2
516
Normal
-0.2
567
Tumor
-0.2
127
Tumor
-0.2
415
Tumor
-0.2
444
Normal
-0.2
881
Tumor
-0.2
191
Tumor
-0.2
615
Tumor
-0.2
976
Normal
-0.2
187
Tumor
-0.2
874
Normal
-0.2
473
Tumor
-0.2
1031
Tumor
-0.2
852
Normal
-0.2
1027
Tumor
-0.3
364
Normal
-0.3
635
Tumor
-0.3
355
Tumor
-0.3
386
Normal
-0.3
524
Normal
-0.3
192
Normal
-0.3
823
Tumor
-0.4
423
Tumor
-0.4
966
Normal
-0.4
745
Tumor
-0.4
641
Tumor
-0.4
341
Tumor
-0.4
443
Tumor
-0.4
391
Tumor
-0.4
1013
Tumor
-0.4
431
Tumor
-0.4
147
Tumor
-0.4
642
Normal
-0.4
367
Tumor
-0.4
857
Tumor
-0.4
671
Tumor
-0.4
224
Normal
-0.4
1041
Tumor
-0.4
487
Tumor
-0.4
375
Tumor
-0.5
481
Tumor
-0.5
395
Tumor
-0.5
363
Tumor
-0.5
353
Tumor
-0.5
536
Normal
-0.5
721
Tumor
-0.5
478
Normal
-0.5
112
Tumor
-0.5
145
Tumor
-0.5
873
Tumor
-0.5
981
Tumor
-0.5
433
Tumor
-0.6
865
Tumor
-0.6
977
Tumor
-0.6
695
Tumor
-0.6
213
Tumor
-0.6
963
Tumor
-0.6
665
Tumor
-0.6
1043
Tumor
-0.6
113
Tumor
-0.6
957
Tumor
-0.6
223
Tumor
-0.6
313
Tumor
-0.7
435
Tumor
-0.7
525
Tumor
-0.7
955
Tumor
-0.7
921
Tumor
-0.7
661
Tumor
-0.7
915
Tumor
-0.7
861
Tumor
-0.7
953
Tumor
-0.7
311
Tumor
-0.8
465
Tumor
-0.8
231
Tumor
-0.8
283
Tumor
-0.8
491
Tumor
-0.8
911
Tumor
-0.8
1045
Tumor
-0.8
477
Tumor
-0.9
221
Tumor
-0.9
1015
Tumor
-1.0
455
Tumor
-1.0
943
Tumor
-1.0
867
Tumor
-1.0
537
Tumor
-1.1
425
Tumor
-1.1
385
Tumor
-1.1
123
Tumor
-1.3
685
Tumor
-1.3
724
Normal
-1.4
535
Tumor
-1.5
351
Tumor
-1.5
755
Tumor
-1.5
817
Tumor
-1.6
913
Tumor
-1.6
211
Tumor
-1.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.