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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
CIAO2B is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
121.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
345.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
309.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
289.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
279.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
248.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
236.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
236.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
235.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
235.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
229.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
223.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
220.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
220.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
212.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
211.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
209.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
208.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
208.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
208.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
207.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
206.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
202.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
199.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
197.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
195.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
194.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
194.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
193.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
191.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
191.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
190.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
190.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
185.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
184.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
182.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
182.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
181.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
180.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
180.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
179.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
177.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
174.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
173.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
173.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
172.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
171.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
170.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
170.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
169.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
168.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
167.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
167.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
167.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
166.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
166.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
166.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
166.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
165.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
165.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
165.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
165.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
164.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
163.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
162.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
162.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
161.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
159.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
158.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
156.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
156.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
155.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
154.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
154.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
153.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
152.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
152.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
152.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
151.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
151.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
150.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
150.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
150.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
150.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
148.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
148.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
148.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
148.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
148.1
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
147.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
147.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
146.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
146.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
145.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
145.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
145.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
145.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
144.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
144.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
144.1
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
143.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
143.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
143.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
143.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
142.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
142.6
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
141.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
141.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
141.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
141.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
140.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
140.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
140.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
140.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
140.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
139.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
139.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
139.3
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
137.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
137.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
137.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
137.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
136.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
136.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
135.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
135.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
135.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
135.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
135.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
135.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
134.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
134.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
133.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
133.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
132.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
132.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
131.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
131.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
129.9
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
129.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
129.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
129.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
128.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
128.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
128.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
128.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
127.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
127.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
127.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
126.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
126.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
125.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
124.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
124.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
124.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
124.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
123.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
123.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
123.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
122.9
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
122.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
121.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
121.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
120.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
120.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
120.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
119.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
119.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
118.8
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
118.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
118.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
118.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
117.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
117.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
117.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
116.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
116.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
116.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
116.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
116.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
116.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
115.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
115.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
114.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
114.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
114.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
113.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
113.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
113.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
112.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
112.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
112.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
112.0
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
111.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
110.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
110.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
110.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
110.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
109.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
109.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
109.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
107.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
107.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
106.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
106.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
106.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
105.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
105.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
105.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
105.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
104.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
103.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
102.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
102.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
102.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
101.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
101.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
101.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
101.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
101.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
101.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
101.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
100.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
100.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
100.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
100.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
99.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
99.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
98.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
98.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
97.4
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
97.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
95.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
95.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
95.2
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
95.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
95.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
94.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
94.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
94.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
94.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
94.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
93.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
93.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
92.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
92.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
91.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
91.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
91.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
90.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
90.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
90.7
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
90.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
90.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
90.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
90.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
89.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
89.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
88.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
88.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
88.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
88.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
87.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
87.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
87.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
86.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
86.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
86.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
86.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
85.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
85.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
85.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
85.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
85.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
85.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
84.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
84.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
84.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
83.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
83.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
83.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
82.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
82.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
82.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
82.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
82.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
82.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
82.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
81.8
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
81.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
81.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
81.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
80.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
79.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
79.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
79.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
78.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
78.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
78.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
77.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
77.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
77.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
76.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
76.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
76.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
76.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
75.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
75.6
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
75.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
75.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
74.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
73.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
73.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
73.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
72.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
71.8
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
71.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
70.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
70.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
70.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
70.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
69.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
67.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
67.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
67.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
66.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
66.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
66.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
66.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
66.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
65.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
65.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
65.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
65.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
64.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
63.9
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
63.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
63.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
63.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
63.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
63.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
62.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
62.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
62.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
60.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
60.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
59.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
58.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
58.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
57.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
55.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
54.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
54.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
53.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
52.7
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
52.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
52.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
50.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
49.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
47.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
47.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
46.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
391
Tumor
1.1
387
Tumor
0.9
123
Tumor
0.9
685
Tumor
0.8
413
Tumor
0.8
473
Tumor
0.8
231
Tumor
0.7
661
Tumor
0.7
271
Tumor
0.6
351
Tumor
0.6
125
Tumor
0.6
267
Tumor
0.6
171
Tumor
0.6
147
Tumor
0.6
967
Tumor
0.6
537
Tumor
0.5
221
Tumor
0.5
127
Tumor
0.5
435
Tumor
0.5
635
Tumor
0.5
535
Tumor
0.5
367
Tumor
0.4
414
Normal
0.4
567
Tumor
0.4
227
Tumor
0.4
465
Tumor
0.4
815
Tumor
0.4
331
Tumor
0.4
357
Tumor
0.4
232
Normal
0.4
477
Tumor
0.4
426
Normal
0.4
571
Tumor
0.4
1025
Tumor
0.3
1031
Tumor
0.3
446
Normal
0.3
186
Normal
0.3
617
Tumor
0.3
262
Normal
0.3
272
Normal
0.3
126
Normal
0.3
285
Tumor
0.3
111
Normal
0.3
257
Tumor
0.3
131
Tumor
0.3
471
Tumor
0.3
428
Normal
0.3
114
Normal
0.3
258
Normal
0.3
463
Tumor
0.3
128
Normal
0.3
424
Normal
0.3
172
Normal
0.3
1043
Tumor
0.3
146
Normal
0.2
145
Tumor
0.2
436
Normal
0.2
142
Normal
0.2
188
Normal
0.2
268
Normal
0.2
1021
Tumor
0.2
455
Tumor
0.2
568
Normal
0.2
464
Normal
0.2
444
Normal
0.2
431
Tumor
0.2
447
Tumor
0.2
354
Normal
0.2
395
Tumor
0.2
715
Tumor
0.2
671
Tumor
0.2
443
Tumor
0.2
132
Normal
0.2
965
Tumor
0.2
361
Tumor
0.2
148
Normal
0.2
741
Tumor
0.2
427
Tumor
0.1
311
Tumor
0.1
185
Tumor
0.1
278
Normal
0.1
466
Normal
0.1
342
Normal
0.1
138
Normal
0.1
217
Tumor
0.1
353
Tumor
0.1
433
Tumor
0.1
713
Tumor
0.1
983
Tumor
0.1
112
Tumor
0.1
921
Tumor
0.1
422
Normal
0.1
756
Normal
0.1
213
Tumor
0.1
425
Tumor
0.1
393
Tumor
0.1
162
Normal
0.1
724
Normal
0.1
445
Tumor
0.1
363
Tumor
0.1
394
Normal
0.1
452
Normal
0.1
514
Normal
0.1
468
Normal
0.1
352
Normal
0.1
261
Tumor
0.1
432
Normal
0.1
135
Tumor
0.1
456
Normal
0.1
113
Tumor
0.1
385
Tumor
0.1
328
Normal
0.1
124
Normal
0.1
434
Normal
0.1
298
Normal
0.1
484
Normal
0.1
964
Normal
0.1
564
Normal
0.1
356
Normal
0.0
574
Normal
0.0
481
Tumor
0.0
923
Tumor
0.0
344
Normal
0.0
222
Normal
0.0
951
Tumor
0.0
358
Normal
0.0
416
Normal
0.0
396
Normal
0.0
392
Normal
0.0
817
Tumor
0.0
355
Tumor
0.0
911
Tumor
0.0
517
Tumor
0.0
341
Tumor
0.0
648
Normal
0.0
478
Normal
0.0
618
Normal
0.0
187
Tumor
0.0
314
Normal
0.0
664
Normal
0.0
881
Tumor
0.0
722
Normal
0.0
672
Normal
0.0
332
Normal
0.0
421
Tumor
0.0
451
Tumor
0.0
223
Tumor
0.0
411
Tumor
0.0
533
Tumor
0.0
191
Tumor
0.0
462
Normal
0.0
572
Normal
0.0
553
Tumor
0.0
663
Tumor
0.0
647
Tumor
0.0
388
Normal
0.0
283
Tumor
0.0
482
Normal
0.0
136
Normal
0.0
662
Normal
0.0
284
Normal
0.0
557
Tumor
0.0
386
Normal
0.0
415
Tumor
0.0
493
Tumor
-0.1
914
Normal
-0.1
368
Normal
-0.1
695
Tumor
-0.1
228
Normal
-0.1
743
Tumor
-0.1
558
Normal
-0.1
755
Tumor
-0.1
524
Normal
-0.1
366
Normal
-0.1
665
Tumor
-0.1
958
Normal
-0.1
214
Normal
-0.1
641
Tumor
-0.1
563
Tumor
-0.1
978
Normal
-0.1
518
Normal
-0.1
364
Normal
-0.1
1045
Tumor
-0.1
526
Normal
-0.1
666
Normal
-0.1
286
Normal
-0.1
494
Normal
-0.1
642
Normal
-0.1
467
Tumor
-0.1
786
Normal
-0.1
488
Normal
-0.1
963
Tumor
-0.1
976
Normal
-0.1
916
Normal
-0.1
912
Normal
-0.1
195
Tumor
-0.1
953
Tumor
-0.1
297
Tumor
-0.1
137
Tumor
-0.1
448
Normal
-0.1
483
Tumor
-0.1
472
Normal
-0.1
778
Normal
-0.1
343
Tumor
-0.1
196
Normal
-0.1
573
Tumor
-0.1
384
Normal
-0.1
1041
Tumor
-0.1
525
Tumor
-0.1
497
Tumor
-0.2
516
Normal
-0.2
955
Tumor
-0.2
698
Normal
-0.2
362
Normal
-0.2
981
Tumor
-0.2
212
Normal
-0.2
528
Normal
-0.2
814
Normal
-0.2
716
Normal
-0.2
944
Normal
-0.2
696
Normal
-0.2
498
Normal
-0.2
1044
Normal
-0.2
474
Normal
-0.2
636
Normal
-0.2
376
Normal
-0.2
523
Tumor
-0.2
924
Normal
-0.2
956
Normal
-0.2
1032
Normal
-0.2
1014
Normal
-0.2
412
Normal
-0.2
858
Normal
-0.2
491
Tumor
-0.2
723
Tumor
-0.2
721
Tumor
-0.2
918
Normal
-0.2
714
Normal
-0.2
312
Normal
-0.2
938
Normal
-0.2
545
Tumor
-0.2
867
Tumor
-0.2
877
Tumor
-0.2
727
Tumor
-0.2
1016
Normal
-0.2
954
Normal
-0.2
423
Tumor
-0.3
922
Normal
-0.3
313
Tumor
-0.3
952
Normal
-0.3
864
Normal
-0.3
868
Normal
-0.3
375
Tumor
-0.3
534
Normal
-0.3
615
Tumor
-0.3
813
Tumor
-0.3
161
Tumor
-0.3
926
Normal
-0.3
365
Tumor
-0.3
977
Tumor
-0.3
492
Normal
-0.3
1042
Normal
-0.3
686
Normal
-0.3
746
Normal
-0.3
824
Normal
-0.3
383
Tumor
-0.3
984
Normal
-0.3
785
Tumor
-0.3
546
Normal
-0.3
915
Tumor
-0.3
616
Normal
-0.3
277
Tumor
-0.3
513
Tumor
-0.3
141
Tumor
-0.3
192
Normal
-0.3
224
Normal
-0.3
218
Normal
-0.3
937
Tumor
-0.3
1022
Normal
-0.3
628
Normal
-0.4
882
Normal
-0.4
968
Normal
-0.4
327
Tumor
-0.4
866
Normal
-0.4
925
Tumor
-0.4
1027
Tumor
-0.4
874
Normal
-0.4
554
Normal
-0.4
538
Normal
-0.4
878
Normal
-0.4
1026
Normal
-0.4
966
Normal
-0.4
873
Tumor
-0.4
917
Tumor
-0.4
745
Tumor
-0.4
884
Normal
-0.4
818
Normal
-0.4
742
Normal
-0.4
913
Tumor
-0.4
883
Tumor
-0.5
697
Tumor
-0.5
777
Tumor
-0.5
852
Normal
-0.5
527
Tumor
-0.5
982
Normal
-0.5
1028
Normal
-0.5
975
Tumor
-0.5
738
Normal
-0.5
487
Tumor
-0.5
823
Tumor
-0.5
461
Tumor
-0.5
851
Tumor
-0.5
865
Tumor
-0.5
816
Normal
-0.5
536
Normal
-0.5
861
Tumor
-0.5
1046
Normal
-0.6
1013
Tumor
-0.6
1015
Tumor
-0.6
862
Normal
-0.6
627
Tumor
-0.6
863
Tumor
-0.6
957
Tumor
-0.6
515
Tumor
-0.6
737
Tumor
-0.6
211
Tumor
-0.7
744
Normal
-0.7
857
Tumor
-0.8
728
Normal
-0.8
943
Tumor
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.