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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NDEL1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
55.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
36.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
35.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
28.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
27.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
27.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
25.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
25.1
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
23.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
22.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
20.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
20.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
19.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
19.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
18.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
18.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
18.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
18.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
18.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
18.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
18.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
17.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
16.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
16.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
16.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
16.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
16.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
16.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
16.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
16.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
16.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
16.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
16.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
16.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
15.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
15.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
15.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
15.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
14.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
14.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
14.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
14.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
14.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
14.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
14.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
14.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
14.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
14.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
14.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
13.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
13.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
13.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
13.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.6
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
13.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
13.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
13.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
13.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
13.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
13.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
13.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
12.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
12.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
12.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
12.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
12.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
12.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
11.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
11.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
11.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
11.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
11.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
11.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
11.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
11.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
11.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
11.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
11.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
11.1
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
11.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.9
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
10.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
10.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
10.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
10.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
10.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
10.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
10.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
10.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
10.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
10.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
10.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
10.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
10.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
10.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
10.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
10.1
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
10.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
10.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
9.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.9
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
9.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
9.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.6
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
9.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
9.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
9.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
9.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
9.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
8.9
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
8.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
8.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
8.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
8.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
8.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
8.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
8.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
8.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
8.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
8.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
8.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
8.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
8.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
8.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
8.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
7.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
7.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.8
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
7.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
7.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
7.7
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
7.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.5
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
7.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
7.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.4
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
7.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.3
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
7.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
7.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
7.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.9
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
6.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
6.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
6.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
6.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
6.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
6.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
6.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
6.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
6.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
6.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.4
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
6.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
6.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
6.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.9
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
5.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
5.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.4
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.3
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
5.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
4.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
4.9
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
4.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.4
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
4.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
4.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
3.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
3.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
3.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
3.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
3.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
2.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
2.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
2.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.5
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
1.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
1.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.1
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.0
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.5
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NDEL1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.5
Number of samples
231
Samples
Sample
Description
TPM
DO50817
0 years, male, NA, stage:2, alive, 390 days
74.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
52.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
34.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
34.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
32.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
31.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
30.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
28.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
28.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
28.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
28.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
27.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
27.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
27.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
27.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
26.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
25.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
24.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
24.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
23.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
23.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
22.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
22.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
22.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
22.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
21.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
20.8
DO23541
0 years, male, NA, stage:2, alive, 930 days
20.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
20.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
20.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
20.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
19.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
19.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
19.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
19.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
18.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
18.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
18.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
17.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
17.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
17.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
17.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
17.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
17.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
17.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.8
DO45285
0 years, male, NA, stage:3, alive, 480 days
16.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
16.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
16.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
15.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
15.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
14.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
14.3
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
13.8
DO23531
0 years, female, NA, stage:3, alive, 900 days
13.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
13.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
13.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.4
DO45175
0 years, male, NA, stage:2, alive, 1140 days
13.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
13.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
13.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
13.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
13.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
13.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
13.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
12.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
12.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.8
DO23509
0 years, male, NA, stage:3, dead, 780 days
12.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
12.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
12.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
12.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
12.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
11.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
11.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
11.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
11.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
10.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
10.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
10.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
10.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.4
DO48674
0 years, male, NA, stage:2, alive, 1260 days
10.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
10.2
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
9.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
9.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
9.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
9.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
9.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
9.0
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
8.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
8.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
8.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
8.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
8.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
8.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
8.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
8.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
7.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
7.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
7.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
7.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
7.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.2
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
7.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
7.1
DO23515
0 years, male, NA, stage:2, alive, 1230 days
7.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
6.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
6.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
6.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
6.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
6.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
6.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
5.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
5.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
5.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.6
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
1.6
1032
Normal
1.5
1028
Normal
1.4
1042
Normal
0.8
455
Tumor
0.7
311
Tumor
0.7
956
Normal
0.7
661
Tumor
0.7
1026
Normal
0.7
917
Tumor
0.6
351
Tumor
0.6
698
Normal
0.6
415
Tumor
0.6
953
Tumor
0.6
498
Normal
0.6
195
Tumor
0.6
385
Tumor
0.5
355
Tumor
0.5
724
Normal
0.5
815
Tumor
0.5
715
Tumor
0.5
965
Tumor
0.5
665
Tumor
0.5
954
Normal
0.5
877
Tumor
0.5
283
Tumor
0.5
916
Normal
0.5
137
Tumor
0.5
818
Normal
0.5
467
Tumor
0.4
413
Tumor
0.4
492
Normal
0.4
124
Normal
0.4
424
Normal
0.4
1022
Normal
0.4
451
Tumor
0.4
957
Tumor
0.4
141
Tumor
0.4
192
Normal
0.4
145
Tumor
0.4
955
Tumor
0.4
463
Tumor
0.3
231
Tumor
0.3
126
Normal
0.3
386
Normal
0.3
823
Tumor
0.3
943
Tumor
0.3
285
Tumor
0.3
343
Tumor
0.3
858
Normal
0.3
387
Tumor
0.3
277
Tumor
0.3
363
Tumor
0.3
213
Tumor
0.3
444
Normal
0.3
817
Tumor
0.3
672
Normal
0.3
937
Tumor
0.3
686
Normal
0.3
421
Tumor
0.3
484
Normal
0.3
191
Tumor
0.3
366
Normal
0.3
364
Normal
0.3
416
Normal
0.3
368
Normal
0.3
221
Tumor
0.3
224
Normal
0.3
391
Tumor
0.3
878
Normal
0.3
268
Normal
0.2
428
Normal
0.2
136
Normal
0.2
488
Normal
0.2
217
Tumor
0.2
383
Tumor
0.2
1043
Tumor
0.2
975
Tumor
0.2
357
Tumor
0.2
412
Normal
0.2
395
Tumor
0.2
422
Normal
0.2
952
Normal
0.2
915
Tumor
0.2
851
Tumor
0.2
414
Normal
0.2
852
Normal
0.2
628
Normal
0.2
146
Normal
0.2
312
Normal
0.2
448
Normal
0.2
482
Normal
0.2
125
Tumor
0.2
958
Normal
0.2
362
Normal
0.2
574
Normal
0.2
938
Normal
0.2
341
Tumor
0.2
976
Normal
0.2
494
Normal
0.2
926
Normal
0.2
963
Tumor
0.2
921
Tumor
0.2
944
Normal
0.2
468
Normal
0.2
222
Normal
0.2
912
Normal
0.2
218
Normal
0.2
861
Tumor
0.1
756
Normal
0.1
874
Normal
0.1
966
Normal
0.1
721
Tumor
0.1
432
Normal
0.1
138
Normal
0.1
641
Tumor
0.1
361
Tumor
0.1
642
Normal
0.1
188
Normal
0.1
716
Normal
0.1
862
Normal
0.1
212
Normal
0.1
113
Tumor
0.1
978
Normal
0.1
483
Tumor
0.1
328
Normal
0.1
524
Normal
0.1
396
Normal
0.1
114
Normal
0.1
744
Normal
0.1
746
Normal
0.1
423
Tumor
0.1
186
Normal
0.1
258
Normal
0.1
525
Tumor
0.1
535
Tumor
0.1
951
Tumor
0.1
272
Normal
0.1
616
Normal
0.1
172
Normal
0.1
618
Normal
0.1
462
Normal
0.1
376
Normal
0.1
472
Normal
0.1
696
Normal
0.1
365
Tumor
0.1
384
Normal
0.1
123
Tumor
0.1
824
Normal
0.1
214
Normal
0.1
262
Normal
0.1
132
Normal
0.1
394
Normal
0.1
142
Normal
0.1
447
Tumor
0.1
356
Normal
0.1
881
Tumor
0.1
478
Normal
0.1
297
Tumor
0.1
884
Normal
0.1
426
Normal
0.1
227
Tumor
0.1
695
Tumor
0.1
727
Tumor
0.1
864
Normal
0.1
918
Normal
0.1
497
Tumor
0.1
162
Normal
0.1
636
Normal
0.1
474
Normal
0.1
814
Normal
0.1
816
Normal
0.1
135
Tumor
0.0
1046
Normal
0.0
491
Tumor
0.0
465
Tumor
0.0
187
Tumor
0.0
922
Normal
0.0
536
Normal
0.0
232
Normal
0.0
723
Tumor
0.0
228
Normal
0.0
434
Normal
0.0
223
Tumor
0.0
425
Tumor
0.0
785
Tumor
0.0
427
Tumor
0.0
778
Normal
0.0
128
Normal
0.0
883
Tumor
0.0
786
Normal
0.0
868
Normal
0.0
332
Normal
0.0
331
Tumor
0.0
857
Tumor
0.0
196
Normal
0.0
452
Normal
0.0
647
Tumor
0.0
671
Tumor
0.0
924
Normal
0.0
278
Normal
0.0
112
Tumor
0.0
866
Normal
0.0
271
Tumor
0.0
617
Tumor
0.0
627
Tumor
0.0
433
Tumor
0.0
516
Normal
0.0
666
Normal
0.0
527
Tumor
0.0
388
Normal
0.0
392
Normal
0.0
572
Normal
0.0
737
Tumor
0.0
148
Normal
0.0
882
Normal
0.0
493
Tumor
0.0
662
Normal
0.0
431
Tumor
0.0
487
Tumor
0.0
664
Normal
0.0
464
Normal
0.0
714
Normal
0.0
456
Normal
0.0
327
Tumor
0.0
313
Tumor
0.0
314
Normal
-0.1
914
Normal
-0.1
127
Tumor
-0.1
528
Normal
-0.1
171
Tumor
-0.1
466
Normal
-0.1
968
Normal
-0.1
411
Tumor
-0.1
436
Normal
-0.1
697
Tumor
-0.1
375
Tumor
-0.1
722
Normal
-0.1
261
Tumor
-0.1
131
Tumor
-0.1
738
Normal
-0.1
648
Normal
-0.1
713
Tumor
-0.1
741
Tumor
-0.1
913
Tumor
-0.1
545
Tumor
-0.1
514
Normal
-0.1
635
Tumor
-0.1
284
Normal
-0.1
964
Normal
-0.1
354
Normal
-0.1
298
Normal
-0.1
111
Normal
-0.1
911
Tumor
-0.1
538
Normal
-0.1
526
Normal
-0.1
923
Tumor
-0.1
685
Tumor
-0.1
563
Tumor
-0.1
967
Tumor
-0.1
481
Tumor
-0.1
867
Tumor
-0.1
446
Normal
-0.1
185
Tumor
-0.1
742
Normal
-0.1
1013
Tumor
-0.1
568
Normal
-0.1
984
Normal
-0.1
513
Tumor
-0.2
558
Normal
-0.2
615
Tumor
-0.2
982
Normal
-0.2
1044
Normal
-0.2
257
Tumor
-0.2
393
Tumor
-0.2
981
Tumor
-0.2
925
Tumor
-0.2
518
Normal
-0.2
286
Normal
-0.2
1014
Normal
-0.2
546
Normal
-0.2
777
Tumor
-0.2
755
Tumor
-0.2
728
Normal
-0.2
745
Tumor
-0.2
813
Tumor
-0.2
983
Tumor
-0.2
534
Normal
-0.2
863
Tumor
-0.2
523
Tumor
-0.2
267
Tumor
-0.3
147
Tumor
-0.3
663
Tumor
-0.3
564
Normal
-0.3
435
Tumor
-0.3
554
Normal
-0.3
344
Normal
-0.3
461
Tumor
-0.3
553
Tumor
-0.3
571
Tumor
-0.3
443
Tumor
-0.3
865
Tumor
-0.3
977
Tumor
-0.4
358
Normal
-0.4
537
Tumor
-0.4
873
Tumor
-0.4
573
Tumor
-0.4
567
Tumor
-0.4
515
Tumor
-0.4
352
Normal
-0.4
161
Tumor
-0.4
1016
Normal
-0.4
517
Tumor
-0.4
1015
Tumor
-0.5
471
Tumor
-0.5
557
Tumor
-0.5
353
Tumor
-0.5
367
Tumor
-0.5
445
Tumor
-0.5
473
Tumor
-0.6
533
Tumor
-0.6
477
Tumor
-0.6
743
Tumor
-0.6
342
Normal
-0.6
1045
Tumor
-0.7
1041
Tumor
-1.3
1025
Tumor
-1.3
1031
Tumor
-1.6
1027
Tumor
-1.8
1021
Tumor
-2.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
