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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMX3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
23.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
20.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
19.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
16.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
16.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
15.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
14.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
13.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
13.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
10.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
10.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
9.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
8.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
8.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
8.2
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.0
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
7.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
7.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
7.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
7.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.2
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
7.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.8
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
6.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
6.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
6.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.2
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
6.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
6.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
5.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
5.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
5.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
5.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
5.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
5.5
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
5.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
5.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
5.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
5.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
5.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
5.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
5.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
5.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
5.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
5.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
5.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
5.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
4.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
4.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.8
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.7
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
4.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
4.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
4.6
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
4.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
4.5
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
4.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.3
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
4.2
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
4.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
4.2
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
4.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
4.1
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
4.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
4.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
3.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
3.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
3.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
3.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
3.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
3.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
3.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
3.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
3.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
3.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
3.6
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
3.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.5
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.5
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
3.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
3.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
3.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.4
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
3.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
3.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
3.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
3.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
3.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
2.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
2.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
2.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
2.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
2.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.8
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.8
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
2.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
2.8
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
2.7
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
2.7
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
2.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
2.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.6
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
2.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
2.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
2.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
2.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
2.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
2.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
2.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
2.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
2.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
2.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
2.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
2.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.3
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
2.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
2.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
2.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
2.2
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
2.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
2.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.1
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
2.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
1.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
1.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
1.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
1.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.3
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1.3
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1.0
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.0
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.7
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMX3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.0
Number of samples
231
Samples
Sample
Description
TPM
DO23534
0 years, male, NA, stage:2, alive, 840 days
28.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
28.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
24.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
24.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
23.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
23.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
21.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
21.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
21.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
20.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
17.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.3
DO45251
0 years, female, NA, stage:2, alive, 900 days
17.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
17.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
17.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
17.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
16.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
16.3
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
16.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
16.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
15.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
15.3
DO45123
0 years, female, NA, stage:2, dead, 570 days
15.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
15.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
15.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
14.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
14.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
14.5
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.5
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.3
DO45177
0 years, female, NA, stage:3, alive, 1260 days
14.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
14.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
13.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
13.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
13.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
13.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
13.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
13.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.2
DO23546
0 years, male, NA, stage:2, alive, 1050 days
13.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
13.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
12.9
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.8
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
12.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
12.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
12.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
12.1
DO48728
0 years, female, NA, stage:2, alive, 150 days
12.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
12.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
11.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
11.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
11.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
11.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
11.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
11.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.0
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
10.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
10.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
10.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
10.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
10.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
10.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
10.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
9.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
9.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
9.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
9.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
9.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
9.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
9.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
8.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
8.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
8.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
8.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
8.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
8.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
8.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
8.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.3
DO50825
0 years, male, NA, stage:2, alive, 390 days
8.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
8.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
8.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
8.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
8.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
8.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.0
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
7.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
7.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.6
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
7.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
7.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
7.2
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
7.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
7.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
6.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
6.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
6.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.6
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
6.3
DO23513
0 years, male, NA, stage:3, alive, 1200 days
6.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
6.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
5.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
5.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
5.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
5.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
5.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
4.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
4.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
4.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
4.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
4.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
4.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
3.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
3.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
3.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
211
Tumor
1.3
661
Tumor
0.9
536
Normal
0.8
943
Tumor
0.7
125
Tumor
0.7
573
Tumor
0.7
343
Tumor
0.7
491
Tumor
0.7
355
Tumor
0.6
283
Tumor
0.6
311
Tumor
0.6
713
Tumor
0.5
447
Tumor
0.5
917
Tumor
0.5
383
Tumor
0.5
445
Tumor
0.5
857
Tumor
0.5
385
Tumor
0.5
814
Normal
0.5
954
Normal
0.5
427
Tumor
0.5
524
Normal
0.5
852
Normal
0.4
721
Tumor
0.4
1015
Tumor
0.4
492
Normal
0.4
671
Tumor
0.4
535
Tumor
0.4
823
Tumor
0.4
851
Tumor
0.4
434
Normal
0.4
953
Tumor
0.4
525
Tumor
0.4
188
Normal
0.4
672
Normal
0.3
384
Normal
0.3
498
Normal
0.3
978
Normal
0.3
697
Tumor
0.3
817
Tumor
0.3
724
Normal
0.3
213
Tumor
0.3
538
Normal
0.3
455
Tumor
0.3
192
Normal
0.3
161
Tumor
0.3
185
Tumor
0.3
914
Normal
0.3
916
Normal
0.3
478
Normal
0.3
963
Tumor
0.3
966
Normal
0.3
1044
Normal
0.2
224
Normal
0.2
686
Normal
0.2
563
Tumor
0.2
375
Tumor
0.2
297
Tumor
0.2
881
Tumor
0.2
913
Tumor
0.2
421
Tumor
0.2
124
Normal
0.2
262
Normal
0.2
1031
Tumor
0.2
861
Tumor
0.2
284
Normal
0.2
356
Normal
0.2
975
Tumor
0.2
493
Tumor
0.2
878
Normal
0.2
415
Tumor
0.2
1013
Tumor
0.2
444
Normal
0.2
497
Tumor
0.2
126
Normal
0.2
517
Tumor
0.2
467
Tumor
0.2
352
Normal
0.2
716
Normal
0.2
813
Tumor
0.2
141
Tumor
0.2
527
Tumor
0.2
187
Tumor
0.2
354
Normal
0.1
268
Normal
0.1
461
Tumor
0.1
368
Normal
0.1
663
Tumor
0.1
113
Tumor
0.1
984
Normal
0.1
1021
Tumor
0.1
863
Tumor
0.1
715
Tumor
0.1
696
Normal
0.1
884
Normal
0.1
923
Tumor
0.1
874
Normal
0.1
662
Normal
0.1
395
Tumor
0.1
956
Normal
0.1
362
Normal
0.1
1028
Normal
0.1
866
Normal
0.1
285
Tumor
0.1
228
Normal
0.1
558
Normal
0.1
868
Normal
0.1
394
Normal
0.1
756
Normal
0.1
883
Tumor
0.1
313
Tumor
0.1
1032
Normal
0.1
468
Normal
0.1
958
Normal
0.1
261
Tumor
0.1
714
Normal
0.1
212
Normal
0.1
976
Normal
0.1
1027
Tumor
0.1
344
Normal
0.1
567
Tumor
0.1
955
Tumor
0.1
785
Tumor
0.1
286
Normal
0.1
952
Normal
0.0
1043
Tumor
0.0
528
Normal
0.0
494
Normal
0.0
392
Normal
0.0
474
Normal
0.0
363
Tumor
0.0
388
Normal
0.0
217
Tumor
0.0
924
Normal
0.0
968
Normal
0.0
148
Normal
0.0
574
Normal
0.0
114
Normal
0.0
138
Normal
0.0
358
Normal
0.0
367
Tumor
0.0
877
Tumor
0.0
514
Normal
0.0
111
Normal
0.0
386
Normal
0.0
412
Normal
0.0
728
Normal
0.0
864
Normal
0.0
647
Tumor
0.0
387
Tumor
0.0
332
Normal
0.0
1046
Normal
0.0
628
Normal
0.0
666
Normal
0.0
912
Normal
0.0
312
Normal
0.0
636
Normal
0.0
396
Normal
0.0
815
Tumor
0.0
416
Normal
0.0
915
Tumor
0.0
191
Tumor
0.0
665
Tumor
0.0
393
Tumor
0.0
722
Normal
0.0
162
Normal
0.0
218
Normal
0.0
786
Normal
0.0
938
Normal
0.0
231
Tumor
0.0
357
Tumor
0.0
448
Normal
0.0
516
Normal
0.0
778
Normal
0.0
433
Tumor
0.0
545
Tumor
0.0
272
Normal
-0.1
1042
Normal
-0.1
471
Tumor
-0.1
328
Normal
-0.1
553
Tumor
-0.1
146
Normal
-0.1
685
Tumor
-0.1
365
Tumor
-0.1
446
Normal
-0.1
944
Normal
-0.1
195
Tumor
-0.1
957
Tumor
-0.1
227
Tumor
-0.1
366
Normal
-0.1
981
Tumor
-0.1
452
Normal
-0.1
816
Normal
-0.1
744
Normal
-0.1
862
Normal
-0.1
664
Normal
-0.1
145
Tumor
-0.1
983
Tumor
-0.1
462
Normal
-0.1
918
Normal
-0.1
1045
Tumor
-0.1
376
Normal
-0.1
456
Normal
-0.1
616
Normal
-0.1
572
Normal
-0.1
1014
Normal
-0.1
432
Normal
-0.1
922
Normal
-0.1
364
Normal
-0.1
391
Tumor
-0.1
135
Tumor
-0.1
526
Normal
-0.1
743
Tumor
-0.1
1026
Normal
-0.1
746
Normal
-0.1
422
Normal
-0.1
642
Normal
-0.1
172
Normal
-0.1
546
Normal
-0.1
738
Normal
-0.1
617
Tumor
-0.1
473
Tumor
-0.1
342
Normal
-0.1
1016
Normal
-0.1
278
Normal
-0.1
142
Normal
-0.1
353
Tumor
-0.1
451
Tumor
-0.1
466
Normal
-0.1
257
Tumor
-0.1
136
Normal
-0.2
858
Normal
-0.2
554
Normal
-0.2
537
Tumor
-0.2
557
Tumor
-0.2
727
Tumor
-0.2
314
Normal
-0.2
627
Tumor
-0.2
982
Normal
-0.2
223
Tumor
-0.2
483
Tumor
-0.2
128
Normal
-0.2
1022
Normal
-0.2
1025
Tumor
-0.2
648
Normal
-0.2
641
Tumor
-0.2
258
Normal
-0.2
925
Tumor
-0.2
534
Normal
-0.2
926
Normal
-0.2
464
Normal
-0.2
882
Normal
-0.2
921
Tumor
-0.2
568
Normal
-0.2
186
Normal
-0.2
867
Tumor
-0.2
1041
Tumor
-0.2
723
Tumor
-0.2
564
Normal
-0.2
232
Normal
-0.2
298
Normal
-0.2
341
Tumor
-0.2
331
Tumor
-0.2
824
Normal
-0.2
413
Tumor
-0.2
698
Normal
-0.2
463
Tumor
-0.2
818
Normal
-0.2
351
Tumor
-0.2
741
Tumor
-0.2
361
Tumor
-0.2
742
Normal
-0.2
737
Tumor
-0.2
518
Normal
-0.2
755
Tumor
-0.2
214
Normal
-0.2
132
Normal
-0.2
472
Normal
-0.2
533
Tumor
-0.2
977
Tumor
-0.3
426
Normal
-0.3
964
Normal
-0.3
488
Normal
-0.3
615
Tumor
-0.3
267
Tumor
-0.3
271
Tumor
-0.3
873
Tumor
-0.3
951
Tumor
-0.3
137
Tumor
-0.3
127
Tumor
-0.3
484
Normal
-0.3
277
Tumor
-0.3
523
Tumor
-0.3
477
Tumor
-0.3
414
Normal
-0.3
745
Tumor
-0.3
618
Normal
-0.3
515
Tumor
-0.3
425
Tumor
-0.3
911
Tumor
-0.3
147
Tumor
-0.4
196
Normal
-0.4
481
Tumor
-0.4
965
Tumor
-0.4
436
Normal
-0.4
777
Tumor
-0.4
865
Tumor
-0.4
428
Normal
-0.4
327
Tumor
-0.4
424
Normal
-0.4
513
Tumor
-0.4
112
Tumor
-0.4
222
Normal
-0.4
482
Normal
-0.4
465
Tumor
-0.4
423
Tumor
-0.5
171
Tumor
-0.5
937
Tumor
-0.5
221
Tumor
-0.5
443
Tumor
-0.6
411
Tumor
-0.6
431
Tumor
-0.6
487
Tumor
-0.6
571
Tumor
-0.6
967
Tumor
-0.6
635
Tumor
-0.7
695
Tumor
-0.7
131
Tumor
-0.7
123
Tumor
-0.7
435
Tumor
-0.8
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
