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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMEM41B is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
35.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
31.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
30.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
26.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
26.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
22.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
22.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
21.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
20.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
20.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
20.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
19.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
19.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
19.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
19.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
18.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
18.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
18.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
18.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
18.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
17.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
17.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
17.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
17.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
17.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
16.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.8
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
16.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
16.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
16.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
16.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
15.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
15.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
15.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
15.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.5
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
15.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
15.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
15.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
15.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
14.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
14.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
14.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
14.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
14.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
14.3
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
14.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
14.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
14.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
13.9
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
13.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
13.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
13.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
13.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
13.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
13.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
13.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
13.2
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
13.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
13.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
12.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
12.8
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
12.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
12.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.7
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
12.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
12.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.4
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
12.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
12.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.3
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
12.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
12.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
12.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
12.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
12.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
11.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
11.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
11.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
11.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
11.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
11.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
11.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
11.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
11.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.2
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
11.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
11.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
10.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
10.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
10.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
10.7
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
10.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.4
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
10.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
10.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
10.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
10.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
10.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
9.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
9.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
9.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
9.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
9.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
9.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
9.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
9.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
9.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
9.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.1
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
9.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
9.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
9.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
9.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
9.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
8.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
8.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
8.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
8.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
8.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
8.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
8.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
8.2
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
8.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.2
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
8.2
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
8.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.1
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
8.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
8.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
7.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
7.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
7.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
7.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
7.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
7.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
7.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
7.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
7.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
7.3
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.3
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
7.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.2
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
7.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
7.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
7.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
6.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
6.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
6.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
6.8
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
6.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
6.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
6.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
6.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
6.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
6.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
6.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
6.5
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
6.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
6.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
6.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
6.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
6.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
5.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.9
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
5.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
5.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
5.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
5.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.9
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
4.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
4.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
4.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.5
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
4.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.2
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
3.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
3.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.3
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.3
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMEM41B is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.1
Number of samples
231
Samples
Sample
Description
TPM
DO45217
0 years, female, NA, stage:3, dead, 270 days
45.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
39.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
37.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
34.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
29.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
28.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
28.4
DO50791
0 years, female, NA, stage:1, dead, 480 days
27.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
26.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
26.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
26.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
25.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
24.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
24.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
24.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
23.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
23.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
23.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
23.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
23.0
DO45277
0 years, male, NA, stage:3, alive, 600 days
22.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
22.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
22.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
21.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
21.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
21.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
20.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
20.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
20.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
20.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
20.3
DO50840
0 years, male, NA, stage:2, alive, 330 days
20.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
19.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
19.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
19.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
19.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
18.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
18.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
18.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
18.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
17.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
17.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
17.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
17.6
DO45289
0 years, female, NA, stage:3, alive, 360 days
17.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
17.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
17.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
17.2
DO45223
0 years, male, NA, stage:4, alive, 1020 days
17.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
17.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
16.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
16.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
15.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
15.5
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
15.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
15.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
15.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
15.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
14.8
DO50816
0 years, male, NA, stage:2, alive, 390 days
14.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
14.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.8
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.6
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
14.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
14.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
14.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
14.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
14.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
14.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
13.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
13.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
13.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
13.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
13.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
13.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
13.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
13.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
13.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
13.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.2
DO23516
0 years, male, NA, stage:3, dead, 20 days
13.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
13.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
12.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
12.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
12.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.7
DO23544
0 years, male, NA, stage:2, alive, 960 days
12.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
12.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
12.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
12.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
11.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
11.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
11.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
11.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.5
DO50789
0 years, female, NA, stage:2, alive, 570 days
11.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
11.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
11.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
11.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.3
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
11.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
11.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.1
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
11.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
11.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
10.8
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.8
DO48719
0 years, male, NA, stage:2, alive, 690 days
10.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
10.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
10.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
10.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
10.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
9.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
9.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
9.6
DO45307
0 years, female, NA, stage:4, dead, 240 days
9.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
9.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
9.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
9.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
9.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
9.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.8
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
8.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
8.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
8.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
8.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
8.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
7.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
7.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
7.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
7.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
7.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
7.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
6.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
6.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
171
Tumor
1.6
647
Tumor
1.0
1027
Tumor
1.0
411
Tumor
0.9
435
Tumor
0.8
857
Tumor
0.8
525
Tumor
0.8
873
Tumor
0.7
665
Tumor
0.7
865
Tumor
0.7
421
Tumor
0.7
257
Tumor
0.7
635
Tumor
0.7
863
Tumor
0.6
145
Tumor
0.6
481
Tumor
0.6
571
Tumor
0.6
921
Tumor
0.6
851
Tumor
0.6
147
Tumor
0.6
357
Tumor
0.6
483
Tumor
0.6
363
Tumor
0.5
135
Tumor
0.5
1013
Tumor
0.5
1021
Tumor
0.5
187
Tumor
0.5
185
Tumor
0.5
415
Tumor
0.5
755
Tumor
0.5
341
Tumor
0.5
161
Tumor
0.5
741
Tumor
0.5
515
Tumor
0.5
112
Tumor
0.5
513
Tumor
0.5
533
Tumor
0.5
517
Tumor
0.5
227
Tumor
0.5
1043
Tumor
0.4
314
Normal
0.4
221
Tumor
0.4
557
Tumor
0.4
925
Tumor
0.4
563
Tumor
0.4
487
Tumor
0.4
267
Tumor
0.4
777
Tumor
0.4
162
Normal
0.4
313
Tumor
0.4
965
Tumor
0.4
123
Tumor
0.4
915
Tumor
0.4
573
Tumor
0.4
685
Tumor
0.4
443
Tumor
0.4
615
Tumor
0.4
423
Tumor
0.4
361
Tumor
0.3
862
Normal
0.3
922
Normal
0.3
1014
Normal
0.3
358
Normal
0.3
957
Tumor
0.3
923
Tumor
0.3
431
Tumor
0.3
172
Normal
0.3
285
Tumor
0.3
671
Tumor
0.3
1045
Tumor
0.3
663
Tumor
0.3
353
Tumor
0.3
232
Normal
0.3
742
Normal
0.3
445
Tumor
0.3
937
Tumor
0.3
545
Tumor
0.3
367
Tumor
0.3
883
Tumor
0.3
332
Normal
0.3
497
Tumor
0.3
141
Tumor
0.3
728
Normal
0.3
815
Tumor
0.3
365
Tumor
0.2
527
Tumor
0.2
342
Normal
0.2
983
Tumor
0.2
461
Tumor
0.2
343
Tumor
0.2
132
Normal
0.2
191
Tumor
0.2
297
Tumor
0.2
186
Normal
0.2
861
Tumor
0.2
355
Tumor
0.2
354
Normal
0.2
661
Tumor
0.2
393
Tumor
0.2
926
Normal
0.2
713
Tumor
0.2
462
Normal
0.2
477
Tumor
0.2
484
Normal
0.2
535
Tumor
0.2
738
Normal
0.2
351
Tumor
0.2
963
Tumor
0.2
482
Normal
0.2
698
Normal
0.2
376
Normal
0.2
975
Tumor
0.2
1044
Normal
0.2
366
Normal
0.2
278
Normal
0.2
463
Tumor
0.2
982
Normal
0.2
813
Tumor
0.2
493
Tumor
0.2
664
Normal
0.2
384
Normal
0.2
537
Tumor
0.2
217
Tumor
0.2
388
Normal
0.2
258
Normal
0.2
277
Tumor
0.2
428
Normal
0.1
964
Normal
0.1
785
Tumor
0.1
526
Normal
0.1
222
Normal
0.1
148
Normal
0.1
433
Tumor
0.1
114
Normal
0.1
127
Tumor
0.1
392
Normal
0.1
298
Normal
0.1
568
Normal
0.1
1046
Normal
0.1
666
Normal
0.1
953
Tumor
0.1
196
Normal
0.1
448
Normal
0.1
125
Tumor
0.1
391
Tumor
0.1
286
Normal
0.1
1015
Tumor
0.1
1025
Tumor
0.1
138
Normal
0.1
823
Tumor
0.1
984
Normal
0.1
852
Normal
0.1
212
Normal
0.1
383
Tumor
0.1
488
Normal
0.1
271
Tumor
0.1
494
Normal
0.1
465
Tumor
0.1
111
Normal
0.1
662
Normal
0.1
422
Normal
0.1
978
Normal
0.1
912
Normal
0.1
938
Normal
0.1
523
Tumor
0.1
142
Normal
0.1
818
Normal
0.1
455
Tumor
0.1
648
Normal
0.1
228
Normal
0.1
272
Normal
0.1
368
Normal
0.1
113
Tumor
0.1
352
Normal
0.1
344
Normal
0.1
223
Tumor
0.1
966
Normal
0.1
1016
Normal
0.1
146
Normal
0.1
128
Normal
0.1
195
Tumor
0.1
362
Normal
0.1
824
Normal
0.1
864
Normal
0.0
1022
Normal
0.0
866
Normal
0.0
136
Normal
0.0
967
Tumor
0.0
868
Normal
0.0
686
Normal
0.0
564
Normal
0.0
137
Tumor
0.0
874
Normal
0.0
958
Normal
0.0
858
Normal
0.0
413
Tumor
0.0
976
Normal
0.0
721
Tumor
0.0
817
Tumor
0.0
695
Tumor
0.0
968
Normal
0.0
756
Normal
0.0
911
Tumor
0.0
424
Normal
0.0
396
Normal
0.0
924
Normal
0.0
918
Normal
0.0
877
Tumor
0.0
572
Normal
0.0
518
Normal
0.0
261
Tumor
0.0
218
Normal
0.0
331
Tumor
0.0
514
Normal
0.0
268
Normal
0.0
327
Tumor
0.0
412
Normal
0.0
727
Tumor
0.0
426
Normal
0.0
427
Tumor
0.0
262
Normal
0.0
284
Normal
0.0
312
Normal
0.0
211
Tumor
0.0
231
Tumor
0.0
696
Normal
0.0
446
Normal
0.0
916
Normal
0.0
956
Normal
0.0
642
Normal
0.0
913
Tumor
0.0
387
Tumor
0.0
878
Normal
0.0
744
Normal
0.0
884
Normal
-0.1
951
Tumor
-0.1
214
Normal
-0.1
416
Normal
-0.1
814
Normal
-0.1
714
Normal
-0.1
697
Tumor
-0.1
636
Normal
-0.1
882
Normal
-0.1
124
Normal
-0.1
723
Tumor
-0.1
516
Normal
-0.1
746
Normal
-0.1
546
Normal
-0.1
574
Normal
-0.1
385
Tumor
-0.1
716
Normal
-0.1
955
Tumor
-0.1
456
Normal
-0.1
474
Normal
-0.1
553
Tumor
-0.1
867
Tumor
-0.1
328
Normal
-0.1
981
Tumor
-0.1
131
Tumor
-0.1
954
Normal
-0.1
641
Tumor
-0.1
394
Normal
-0.1
1026
Normal
-0.1
627
Tumor
-0.1
452
Normal
-0.1
213
Tumor
-0.1
188
Normal
-0.1
224
Normal
-0.1
375
Tumor
-0.1
524
Normal
-0.1
536
Normal
-0.1
617
Tumor
-0.1
943
Tumor
-0.1
491
Tumor
-0.2
745
Tumor
-0.2
356
Normal
-0.2
672
Normal
-0.2
538
Normal
-0.2
451
Tumor
-0.2
425
Tumor
-0.2
558
Normal
-0.2
616
Normal
-0.2
447
Tumor
-0.2
715
Tumor
-0.2
618
Normal
-0.2
737
Tumor
-0.2
816
Normal
-0.2
786
Normal
-0.2
436
Normal
-0.2
471
Tumor
-0.2
1042
Normal
-0.2
977
Tumor
-0.2
126
Normal
-0.2
628
Normal
-0.2
498
Normal
-0.2
472
Normal
-0.2
386
Normal
-0.2
192
Normal
-0.2
473
Tumor
-0.2
414
Normal
-0.2
778
Normal
-0.2
1041
Tumor
-0.2
478
Normal
-0.2
952
Normal
-0.2
492
Normal
-0.3
464
Normal
-0.3
944
Normal
-0.3
311
Tumor
-0.3
466
Normal
-0.3
914
Normal
-0.3
534
Normal
-0.3
434
Normal
-0.3
554
Normal
-0.3
722
Normal
-0.3
432
Normal
-0.3
444
Normal
-0.3
881
Tumor
-0.4
1031
Tumor
-0.4
567
Tumor
-0.4
283
Tumor
-0.4
1028
Normal
-0.4
364
Normal
-0.4
1032
Normal
-0.4
395
Tumor
-0.4
724
Normal
-0.5
467
Tumor
-0.5
468
Normal
-0.5
528
Normal
-0.5
917
Tumor
-0.6
743
Tumor
-0.8
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
