MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:2.6 nTPM
HPA Brain:64.5 nTPM
GTEx:2.6 nTPM
FANTOM5:8.9 Scaled Tags Per Million
Pig:7.5 nTPM
Mouse:3.4 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 64.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.8
2219 Male, age 76, both hemispheres 21.5
2666 Male, age 74, left hemisphere 19.8
2586 Male, age 75, left hemisphere 19.7
1827 Male, age 72, unknown 17.7
2828 Female, age 72, unknown 17.4
1870 Female, age 42, unknown 14.2
1833 Male, age 53, unknown 13.7
2411 Female, age 72, unknown 13.0
1830 Male, age 51, unknown 11.7
2019 Male, age 18, unknown 9.8
Dorsal raphe nucleus
nTPM: 35.4
2047 Male, age 72, unknown 69.7
2298 Female, age 72, unknown 38.7
2750 Male, age 76, both hemispheres 35.4
1828 Male, age 53, unknown 17.6
2016 Female, age 72, unknown 15.7
Inferior colliculus
nTPM: 14.5
1890 Male, age 53, unknown 16.0
1848 Female, age 42, unknown 14.8
2849 Male, age 72, unknown 13.8
2097 Female, age 72, unknown 13.3
Median raphe nucleus
nTPM: 64.5
2220 Male, age 76, midline 64.5
Periaquaductal grey, anterior
nTPM: 15.0
1795 Male, age 51, unknown 16.8
2502 Female, age 75, unknown 14.5
1947 Male, age 18, unknown 13.8
Periaquaductal grey, dorsal
nTPM: 16.8
1840 Male, age 53, unknown 19.3
2850 Male, age 76, both hemispheres 17.7
1831 Male, age 72, unknown 15.2
2464 Female, age 72, unknown 14.8
Periaquaductal grey, lateral
nTPM: 13.2
2053 Male, age 18, unknown 14.7
2140 Male, age 76, both hemispheres 13.8
2272 Male, age 74, both hemispheres 11.0
Pretectal area
nTPM: 14.6
1816 Male, age 51, unknown 21.3
1944 Female, age 72, unknown 19.9
2825 Male, age 18, unknown 17.6
1815 Male, age 53, unknown 15.3
2007 Male, age 72, unknown 15.0
2224 Female, age 72, unknown 14.8
1817 Female, age 42, unknown 14.4
2667 Female, age 75, unknown 13.3
2407 Male, age 75, both hemispheres 11.0
2316 Male, age 76, right hemisphere 9.9
2273 Male, age 74, both hemispheres 8.6
Red nucleus
nTPM: 12.3
2588 Male, age 74, left hemisphere 18.4
2725 Female, age 75, unknown 16.4
2584 Male, age 75, left hemisphere 15.0
2503 Female, age 72, unknown 13.1
1821 Female, age 72, unknown 12.3
1954 Female, age 42, unknown 12.0
2823 Male, age 76, right hemisphere 11.0
2769 Male, age 72, unknown 10.5
1904 Male, age 53, unknown 9.9
1865 Male, age 51, unknown 9.8
2785 Male, age 18, unknown 9.6
2227 Male, age 72, unknown 9.3
Substantia nigra
nTPM: 20.2
1916 Female, age 42, unknown 27.5
2665 Male, age 74, both hemispheres 25.4
2699 Male, age 18, unknown 25.0
1941 Male, age 53, unknown 24.5
1851 Male, age 51, unknown 21.2
2241 Male, age 72, unknown 17.1
1889 Female, age 72, unknown 16.5
2409 Female, age 72, unknown 16.5
2583 Male, age 75, right hemisphere 16.0
2590 Female, age 75, unknown 12.6
Superior colliculus
nTPM: 14.8
1796 Male, age 53, unknown 20.5
2087 Female, age 72, unknown 19.3
2668 Female, age 75, unknown 18.2
2261 Male, age 18, unknown 17.0
2587 Male, age 74, left hemisphere 14.5
2664 Male, age 75, both hemispheres 13.8
1839 Male, age 51, unknown 12.8
1895 Male, age 76, right hemisphere 12.2
1913 Female, age 42, unknown 10.1
1995 Male, age 72, unknown 9.6
Ventral tegmental area
nTPM: 21.1
2223 Female, age 72, unknown 28.0
1915 Female, age 42, unknown 21.6
2218 Male, age 76, both hemispheres 20.8
1942 Male, age 51, unknown 20.5
2021 Male, age 53, unknown 20.3
2410 Female, age 72, unknown 15.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 2.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 2.6
Samples: 139

Max nTPM: 7.3
Min nTPM: 0.9
Std nTPM: 0.9
Median nTPM: 2.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 7.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 5.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 5.6
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 5.4
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 5.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 4.7
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 4.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 4.6
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 4.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 4.0
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 4.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 8.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.9
FF:10158-103A5 76 years, female 8.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 7.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 7.5
Samples: 4

Max nTPM: 10.7
Min nTPM: 4.1
Sample A Female 9.0
Sample B Female 6.1
Sample C Male 10.7
Sample D Male 4.1
Midbrain
nTPM: 6.7
Samples: 4

Max nTPM: 9.3
Min nTPM: 4.2
Sample A Female 4.2
Sample B Female 7.0
Sample C Male 9.3
Sample D Male 6.4
Periaqueductal gray
nTPM: 6.6
Samples: 3

Max nTPM: 8.7
Min nTPM: 4.9
Sample B Female 6.1
Sample C Male 8.7
Sample D Male 4.9
Superior colliculi
nTPM: 5.3
Samples: 4

Max nTPM: 6.5
Min nTPM: 4.2
Sample A Female 4.9
Sample B Female 4.2
Sample C Male 6.5
Sample D Male 5.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 3.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 3.4
Samples: 4

Max nTPM: 3.8
Min nTPM: 3.1
Sample A Male 3.1
Sample B Male 3.4
Sample C Female 3.1
Sample D Female 3.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
74641321 Antisense, RP_060220_02_E10, Mouse strain C57BL/6J (56 days, male) 0.8
69837499 Antisense, RP_050217_02_F09, Mouse strain C57BL/6J (56 days, male) 0.7

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