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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF169 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
1.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
6.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
5.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
5.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.0
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
4.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
4.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
4.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
4.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
4.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
4.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
4.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
4.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
3.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
3.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
3.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
3.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
3.5
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
3.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
3.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
3.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
3.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
3.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.1
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
3.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
3.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
3.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
3.0
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
2.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
2.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
2.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
2.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
2.8
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.7
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
2.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.6
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
2.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
2.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
2.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
2.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
2.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
2.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
2.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
2.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
2.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2.2
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
2.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
2.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
2.0
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
2.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
2.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
2.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
2.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
2.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
2.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
2.0
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
2.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
1.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
1.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
1.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
1.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
1.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.8
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
1.8
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
1.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.7
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.7
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
1.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
1.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
1.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
1.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
1.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
1.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
1.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.6
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
1.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1.6
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
1.5
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
1.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
1.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
1.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.4
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
1.4
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1.4
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1.4
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
1.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
1.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1.3
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
1.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
1.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
1.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1.1
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
1.1
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
1.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
1.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.1
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
1.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
1.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
1.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.9
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.9
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.8
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.7
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.7
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.7
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.7
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.6
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.6
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.6
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.6
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
0.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.5
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
0.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.5
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.4
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.4
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RNF169 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.7
Number of samples
231
Samples
Sample
Description
TPM
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.1
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
9.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
7.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.5
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
6.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.5
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.9
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
5.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
5.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
5.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
5.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
5.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.1
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
5.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
5.0
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
5.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
4.9
DO23537
0 years, male, NA, stage:2, dead, 900 days
4.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
4.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
4.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
4.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
4.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
4.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
4.7
DO23542
0 years, male, NA, stage:3, alive, 960 days
4.6
DO50829
0 years, male, NA, stage:3, alive, 570 days
4.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.6
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
4.5
DO50857
0 years, male, NA, stage:2, alive, 210 days
4.4
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
4.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
4.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
4.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
4.2
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
4.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
4.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
4.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
4.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
4.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
4.0
DO50814
0 years, male, NA, stage:3, alive, 420 days
3.9
DO23526
0 years, male, NA, stage:3, alive, 1050 days
3.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
3.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
3.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
3.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.7
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
3.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
3.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
3.6
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.6
DO23521
0 years, male, NA, stage:3, alive, 1110 days
3.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
3.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
3.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
3.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
3.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
3.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
3.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
3.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.4
DO45255
0 years, male, NA, stage:3, alive, 720 days
3.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
3.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
3.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
3.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
3.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
3.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
3.3
DO45157
0 years, male, NA, stage:2, alive, 1980 days
3.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
3.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
3.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
3.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
3.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
3.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.1
DO45103
0 years, male, NA, stage:3, alive, 450 days
3.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
3.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
3.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
3.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
3.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
3.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
3.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
3.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
3.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
2.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
2.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
2.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
2.9
DO50783
0 years, male, NA, stage:3, alive, 480 days
2.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
2.9
DO50798
0 years, male, NA, stage:3, dead, 30 days
2.9
DO45097
0 years, male, NA, stage:3, alive, 1620 days
2.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
2.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
2.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
2.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
2.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
2.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.8
DO45129
0 years, male, NA, stage:3, alive, 1470 days
2.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
2.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
2.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
2.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
2.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
2.7
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.6
DO48725
0 years, male, NA, stage:1, alive, 780 days
2.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
2.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
2.6
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2.5
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
2.5
DO48693
0 years, male, NA, stage:2, alive, 900 days
2.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
2.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
2.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
2.5
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.4
DO48759
0 years, male, NA, stage:3, alive, 720 days
2.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
2.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.4
DO50819
0 years, female, NA, stage:2, alive, 510 days
2.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
2.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
2.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
2.3
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
2.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
2.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
2.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
2.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
2.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
2.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
2.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
2.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
2.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
1.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
1.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
1.8
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
1.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
1.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
1.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
1.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
1.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
1.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
1.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
1.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
1.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
1.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
138
Normal
1.5
877
Tumor
1.3
146
Normal
1.2
135
Tumor
1.1
517
Tumor
1.0
957
Tumor
1.0
695
Tumor
1.0
523
Tumor
1.0
161
Tumor
0.9
141
Tumor
0.9
473
Tumor
0.9
132
Normal
0.9
715
Tumor
0.9
884
Normal
0.9
137
Tumor
0.8
224
Normal
0.8
463
Tumor
0.8
136
Normal
0.7
1013
Tumor
0.7
965
Tumor
0.7
865
Tumor
0.7
743
Tumor
0.6
977
Tumor
0.6
192
Normal
0.6
744
Normal
0.6
331
Tumor
0.5
487
Tumor
0.5
385
Tumor
0.5
554
Normal
0.5
921
Tumor
0.5
951
Tumor
0.5
727
Tumor
0.5
737
Tumor
0.5
983
Tumor
0.4
524
Normal
0.4
497
Tumor
0.4
271
Tumor
0.4
1044
Normal
0.4
635
Tumor
0.4
817
Tumor
0.4
721
Tumor
0.4
937
Tumor
0.4
185
Tumor
0.4
492
Normal
0.4
277
Tumor
0.4
533
Tumor
0.4
963
Tumor
0.3
223
Tumor
0.3
943
Tumor
0.3
393
Tumor
0.3
553
Tumor
0.3
923
Tumor
0.3
716
Normal
0.3
142
Normal
0.3
538
Normal
0.3
912
Normal
0.3
285
Tumor
0.3
525
Tumor
0.3
513
Tumor
0.3
573
Tumor
0.3
1025
Tumor
0.3
483
Tumor
0.3
518
Normal
0.3
1026
Normal
0.3
451
Tumor
0.2
313
Tumor
0.2
131
Tumor
0.2
741
Tumor
0.2
956
Normal
0.2
814
Normal
0.2
286
Normal
0.2
467
Tumor
0.2
1041
Tumor
0.2
516
Normal
0.2
917
Tumor
0.2
1028
Normal
0.2
484
Normal
0.2
914
Normal
0.2
228
Normal
0.2
213
Tumor
0.2
878
Normal
0.2
514
Normal
0.2
882
Normal
0.2
386
Normal
0.2
545
Tumor
0.2
388
Normal
0.2
916
Normal
0.2
491
Tumor
0.2
1031
Tumor
0.2
661
Tumor
0.2
858
Normal
0.2
918
Normal
0.2
526
Normal
0.2
924
Normal
0.2
392
Normal
0.2
1043
Tumor
0.2
498
Normal
0.2
913
Tumor
0.2
852
Normal
0.1
416
Normal
0.1
816
Normal
0.1
211
Tumor
0.1
714
Normal
0.1
361
Tumor
0.1
975
Tumor
0.1
647
Tumor
0.1
396
Normal
0.1
696
Normal
0.1
823
Tumor
0.1
984
Normal
0.1
471
Tumor
0.1
813
Tumor
0.1
738
Normal
0.1
537
Tumor
0.1
815
Tumor
0.1
272
Normal
0.1
394
Normal
0.1
126
Normal
0.1
387
Tumor
0.1
477
Tumor
0.1
915
Tumor
0.1
857
Tumor
0.1
557
Tumor
0.1
952
Normal
0.1
1022
Normal
0.1
494
Normal
0.1
415
Tumor
0.1
171
Tumor
0.0
413
Tumor
0.0
364
Normal
0.0
312
Normal
0.0
967
Tumor
0.0
488
Normal
0.0
493
Tumor
0.0
427
Tumor
0.0
925
Tumor
0.0
366
Normal
0.0
227
Tumor
0.0
742
Normal
0.0
455
Tumor
0.0
966
Normal
0.0
874
Normal
0.0
367
Tumor
0.0
268
Normal
0.0
125
Tumor
0.0
978
Normal
0.0
1042
Normal
0.0
546
Normal
0.0
461
Tumor
0.0
873
Tumor
0.0
685
Tumor
0.0
944
Normal
0.0
284
Normal
0.0
982
Normal
0.0
686
Normal
0.0
412
Normal
0.0
311
Tumor
0.0
262
Normal
0.0
922
Normal
0.0
145
Tumor
0.0
778
Normal
0.0
713
Tumor
0.0
297
Tumor
0.0
723
Tumor
-0.1
391
Tumor
-0.1
113
Tumor
-0.1
1014
Normal
-0.1
851
Tumor
-0.1
112
Tumor
-0.1
456
Normal
-0.1
314
Normal
-0.1
863
Tumor
-0.1
953
Tumor
-0.1
926
Normal
-0.1
188
Normal
-0.1
298
Normal
-0.1
124
Normal
-0.1
195
Tumor
-0.1
383
Tumor
-0.1
395
Tumor
-0.1
187
Tumor
-0.1
362
Normal
-0.1
724
Normal
-0.1
332
Normal
-0.1
355
Tumor
-0.1
698
Normal
-0.1
964
Normal
-0.1
728
Normal
-0.1
866
Normal
-0.1
642
Normal
-0.1
1032
Normal
-0.1
615
Tumor
-0.1
1016
Normal
-0.1
186
Normal
-0.1
478
Normal
-0.1
568
Normal
-0.1
1015
Tumor
-0.1
938
Normal
-0.1
261
Tumor
-0.1
375
Tumor
-0.1
968
Normal
-0.1
474
Normal
-0.1
283
Tumor
-0.1
232
Normal
-0.1
861
Tumor
-0.1
618
Normal
-0.1
278
Normal
-0.2
162
Normal
-0.2
785
Tumor
-0.2
465
Tumor
-0.2
221
Tumor
-0.2
376
Normal
-0.2
571
Tumor
-0.2
755
Tumor
-0.2
1021
Tumor
-0.2
867
Tumor
-0.2
536
Normal
-0.2
267
Tumor
-0.2
641
Tumor
-0.2
697
Tumor
-0.2
191
Tumor
-0.2
1045
Tumor
-0.2
636
Normal
-0.2
818
Normal
-0.2
123
Tumor
-0.2
368
Normal
-0.2
515
Tumor
-0.2
327
Tumor
-0.2
425
Tumor
-0.2
534
Normal
-0.2
722
Normal
-0.2
196
Normal
-0.2
148
Normal
-0.2
384
Normal
-0.2
911
Tumor
-0.2
1046
Normal
-0.2
257
Tumor
-0.2
617
Tumor
-0.2
212
Normal
-0.2
883
Tumor
-0.2
258
Normal
-0.2
981
Tumor
-0.2
881
Tumor
-0.2
147
Tumor
-0.2
356
Normal
-0.2
421
Tumor
-0.3
472
Normal
-0.3
862
Normal
-0.3
528
Normal
-0.3
1027
Tumor
-0.3
777
Tumor
-0.3
222
Normal
-0.3
423
Tumor
-0.3
172
Normal
-0.3
411
Tumor
-0.3
464
Normal
-0.3
567
Tumor
-0.3
114
Normal
-0.3
864
Normal
-0.3
955
Tumor
-0.3
452
Normal
-0.3
527
Tumor
-0.3
976
Normal
-0.3
746
Normal
-0.3
363
Tumor
-0.3
462
Normal
-0.3
365
Tumor
-0.3
218
Normal
-0.3
217
Tumor
-0.3
824
Normal
-0.3
214
Normal
-0.3
127
Tumor
-0.3
481
Tumor
-0.3
628
Normal
-0.4
627
Tumor
-0.4
663
Tumor
-0.4
672
Normal
-0.4
328
Normal
-0.4
574
Normal
-0.4
111
Normal
-0.4
535
Tumor
-0.4
426
Normal
-0.4
564
Normal
-0.4
563
Tumor
-0.4
448
Normal
-0.4
868
Normal
-0.4
671
Tumor
-0.4
231
Tumor
-0.4
572
Normal
-0.4
745
Tumor
-0.4
482
Normal
-0.4
422
Normal
-0.4
558
Normal
-0.5
662
Normal
-0.5
954
Normal
-0.5
665
Tumor
-0.5
468
Normal
-0.5
447
Tumor
-0.5
414
Normal
-0.5
424
Normal
-0.6
616
Normal
-0.6
958
Normal
-0.6
428
Normal
-0.6
128
Normal
-0.6
756
Normal
-0.6
466
Normal
-0.8
664
Normal
-0.8
786
Normal
-0.8
648
Normal
-0.9
666
Normal
-1.3
351
Tumor
N/A
352
Normal
N/A
353
Tumor
N/A
354
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
431
Tumor
N/A
432
Normal
N/A
433
Tumor
N/A
434
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
343
Tumor
N/A
344
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
