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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IDH3A is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
4.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
29.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
24.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
16.6
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
16.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
16.3
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
15.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
15.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
13.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
13.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
13.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
12.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
12.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
10.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
10.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
10.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
9.8
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
9.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
9.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
8.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
8.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
8.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
7.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.9
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
7.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
7.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
7.6
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
7.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.1
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
7.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
7.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
7.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
6.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
6.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
6.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
6.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
6.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
6.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
6.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.2
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
6.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.1
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
6.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
5.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
5.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
5.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
5.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
5.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
5.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
5.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
5.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
5.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
5.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
5.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.3
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
5.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
5.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
5.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
4.9
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
4.9
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
4.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
4.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.8
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
4.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
4.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
4.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
4.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
4.5
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
4.4
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
4.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
4.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
4.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
4.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.3
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
4.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
4.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
4.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
4.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
4.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
4.0
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
3.9
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
3.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
3.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
3.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
3.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
3.6
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
3.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
3.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
3.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
3.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
3.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
3.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
3.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
3.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
3.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
3.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
3.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.1
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
3.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
3.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.0
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
3.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
2.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.9
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
2.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
2.8
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
2.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
2.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
2.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
2.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
2.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
2.4
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
2.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
2.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.4
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
2.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
2.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
2.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
2.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
2.2
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
2.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
2.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
2.1
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
2.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
2.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
2.0
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
1.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1.9
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
1.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
1.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
1.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
1.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
1.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
1.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
1.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
1.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
1.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
1.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
1.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
1.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.9
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.9
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.7
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.7
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.5
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.4
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.4
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IDH3A is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.0
Number of samples
231
Samples
Sample
Description
TPM
DO45091
0 years, male, NA, stage:2, dead, 1320 days
67.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
62.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
42.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
39.9
DO45275
0 years, male, NA, stage:3, dead, 10 days
34.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
34.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
32.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
32.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
29.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
29.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
25.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
24.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
24.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
23.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
23.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
23.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
23.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
22.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
22.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
22.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
22.4
DO23513
0 years, male, NA, stage:3, alive, 1200 days
22.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
22.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
22.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
22.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
21.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
21.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
21.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
21.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
20.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
20.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
20.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
20.6
DO45123
0 years, female, NA, stage:2, dead, 570 days
20.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
19.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
19.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
18.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
18.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
18.9
DO45117
0 years, female, NA, stage:2, dead, 1110 days
18.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
18.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
18.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
18.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
18.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
18.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
17.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
17.6
DO45111
0 years, male, NA, stage:2, alive, 1590 days
17.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
17.5
DO23523
0 years, male, NA, stage:3, alive, 1080 days
17.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
17.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
17.4
DO48720
0 years, female, NA, stage:2, alive, 570 days
17.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
17.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
16.7
DO45199
0 years, female, NA, stage:2, alive, 1350 days
16.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
16.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
16.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
16.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
16.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
16.2
DO45307
0 years, female, NA, stage:4, dead, 240 days
16.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
16.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
16.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
16.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
16.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
15.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
15.8
DO50840
0 years, male, NA, stage:2, alive, 330 days
15.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
15.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
15.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
15.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
15.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
15.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
15.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
15.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
15.1
DO45121
0 years, male, NA, stage:3, alive, 1530 days
15.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
15.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
15.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
14.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
14.8
DO23543
0 years, male, NA, stage:2, alive, 1020 days
14.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
14.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
14.4
DO48701
0 years, male, NA, stage:2, alive, 780 days
14.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
14.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
14.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
14.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
14.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
14.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
14.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
14.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
13.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
13.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
13.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
13.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
13.1
DO50825
0 years, male, NA, stage:2, alive, 390 days
13.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.8
DO45153
0 years, female, NA, stage:2, alive, 1380 days
12.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
12.6
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
12.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
12.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
12.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.1
DO50844
0 years, male, NA, stage:4, alive, 300 days
12.1
DO45181
0 years, female, NA, stage:2, alive, 1200 days
12.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
12.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
12.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
12.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.9
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.9
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.9
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
11.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
11.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
11.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
11.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
11.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
11.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
11.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
11.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
11.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
11.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
11.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
11.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
11.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
10.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
10.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
10.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
10.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.4
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
10.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
10.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
10.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
9.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
9.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
9.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
9.4
DO23536
0 years, male, NA, stage:2, alive, 930 days
9.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
9.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
9.1
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
8.7
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
8.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
7.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
7.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
7.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
6.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
6.5
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
6.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
627
Tumor
1.8
925
Tumor
1.1
937
Tumor
1.0
411
Tumor
0.9
785
Tumor
0.9
1027
Tumor
0.9
491
Tumor
0.9
393
Tumor
0.8
745
Tumor
0.8
615
Tumor
0.7
483
Tumor
0.7
227
Tumor
0.6
873
Tumor
0.6
137
Tumor
0.6
1043
Tumor
0.6
383
Tumor
0.5
571
Tumor
0.5
823
Tumor
0.5
231
Tumor
0.5
431
Tumor
0.5
423
Tumor
0.5
1013
Tumor
0.5
361
Tumor
0.5
443
Tumor
0.5
513
Tumor
0.5
537
Tumor
0.4
697
Tumor
0.4
1045
Tumor
0.4
171
Tumor
0.4
127
Tumor
0.4
915
Tumor
0.4
257
Tumor
0.4
465
Tumor
0.4
487
Tumor
0.4
755
Tumor
0.3
713
Tumor
0.3
957
Tumor
0.3
135
Tumor
0.3
557
Tumor
0.3
635
Tumor
0.3
563
Tumor
0.3
865
Tumor
0.2
313
Tumor
0.2
883
Tumor
0.2
954
Normal
0.2
981
Tumor
0.2
445
Tumor
0.2
665
Tumor
0.2
261
Tumor
0.2
527
Tumor
0.2
524
Normal
0.2
191
Tumor
0.2
923
Tumor
0.2
1041
Tumor
0.2
367
Tumor
0.2
567
Tumor
0.2
461
Tumor
0.2
365
Tumor
0.2
452
Normal
0.2
357
Tumor
0.2
341
Tumor
0.2
195
Tumor
0.2
448
Normal
0.1
851
Tumor
0.1
145
Tumor
0.1
1025
Tumor
0.1
553
Tumor
0.1
538
Normal
0.1
944
Normal
0.1
161
Tumor
0.1
213
Tumor
0.1
387
Tumor
0.1
481
Tumor
0.1
535
Tumor
0.1
546
Normal
0.1
526
Normal
0.1
124
Normal
0.0
778
Normal
0.0
953
Tumor
0.0
922
Normal
0.0
534
Normal
0.0
686
Normal
0.0
756
Normal
0.0
573
Tumor
0.0
376
Normal
0.0
1032
Normal
0.0
421
Tumor
0.0
523
Tumor
0.0
963
Tumor
0.0
926
Normal
0.0
698
Normal
0.0
392
Normal
0.0
1028
Normal
0.0
1031
Tumor
0.0
636
Normal
0.0
415
Tumor
0.0
214
Normal
0.0
375
Tumor
0.0
864
Normal
0.0
863
Tumor
0.0
286
Normal
0.0
857
Tumor
0.0
196
Normal
0.0
142
Normal
0.0
412
Normal
0.0
721
Tumor
0.0
964
Normal
0.0
468
Normal
0.0
727
Tumor
0.0
128
Normal
0.0
363
Tumor
0.0
1014
Normal
0.0
516
Normal
0.0
967
Tumor
0.0
858
Normal
-0.1
416
Normal
-0.1
515
Tumor
-0.1
114
Normal
-0.1
554
Normal
-0.1
867
Tumor
-0.1
976
Normal
-0.1
113
Tumor
-0.1
284
Normal
-0.1
414
Normal
-0.1
536
Normal
-0.1
232
Normal
-0.1
228
Normal
-0.1
916
Normal
-0.1
1026
Normal
-0.1
492
Normal
-0.1
185
Tumor
-0.1
484
Normal
-0.1
488
Normal
-0.1
356
Normal
-0.1
696
Normal
-0.1
211
Tumor
-0.1
824
Normal
-0.1
558
Normal
-0.1
224
Normal
-0.1
978
Normal
-0.1
852
Normal
-0.1
813
Tumor
-0.1
455
Tumor
-0.1
384
Normal
-0.1
568
Normal
-0.1
471
Tumor
-0.1
498
Normal
-0.1
672
Normal
-0.1
147
Tumor
-0.1
494
Normal
-0.1
218
Normal
-0.1
716
Normal
-0.1
528
Normal
-0.1
478
Normal
-0.1
426
Normal
-0.1
354
Normal
-0.1
744
Normal
-0.1
878
Normal
-0.1
477
Tumor
-0.1
564
Normal
-0.1
1044
Normal
-0.1
123
Tumor
-0.1
364
Normal
-0.1
786
Normal
-0.1
695
Tumor
-0.1
352
Normal
-0.1
422
Normal
-0.1
952
Normal
-0.1
332
Normal
-0.1
358
Normal
-0.1
533
Tumor
-0.1
958
Normal
-0.1
1046
Normal
-0.1
344
Normal
-0.1
285
Tumor
-0.1
574
Normal
-0.1
966
Normal
-0.1
187
Tumor
-0.1
818
Normal
-0.1
874
Normal
-0.1
662
Normal
-0.1
447
Tumor
-0.1
924
Normal
-0.1
1015
Tumor
-0.1
1016
Normal
-0.1
742
Normal
-0.1
951
Tumor
-0.1
262
Normal
-0.1
866
Normal
-0.1
914
Normal
-0.2
938
Normal
-0.2
868
Normal
-0.2
685
Tumor
-0.2
746
Normal
-0.2
148
Normal
-0.2
385
Tumor
-0.2
186
Normal
-0.2
212
Normal
-0.2
882
Normal
-0.2
433
Tumor
-0.2
977
Tumor
-0.2
741
Tumor
-0.2
436
Normal
-0.2
473
Tumor
-0.2
722
Normal
-0.2
861
Tumor
-0.2
328
Normal
-0.2
984
Normal
-0.2
192
Normal
-0.2
394
Normal
-0.2
427
Tumor
-0.2
355
Tumor
-0.2
715
Tumor
-0.2
327
Tumor
-0.2
112
Tumor
-0.2
912
Normal
-0.2
982
Normal
-0.2
956
Normal
-0.2
628
Normal
-0.2
444
Normal
-0.2
1042
Normal
-0.2
618
Normal
-0.2
862
Normal
-0.2
572
Normal
-0.2
388
Normal
-0.2
518
Normal
-0.2
432
Normal
-0.2
222
Normal
-0.2
362
Normal
-0.2
968
Normal
-0.2
172
Normal
-0.2
146
Normal
-0.2
911
Tumor
-0.2
368
Normal
-0.2
1022
Normal
-0.2
132
Normal
-0.2
642
Normal
-0.2
884
Normal
-0.2
267
Tumor
-0.2
738
Normal
-0.2
648
Normal
-0.2
723
Tumor
-0.2
525
Tumor
-0.2
815
Tumor
-0.2
424
Normal
-0.2
514
Normal
-0.2
466
Normal
-0.2
278
Normal
-0.2
472
Normal
-0.2
297
Tumor
-0.2
451
Tumor
-0.2
482
Normal
-0.2
126
Normal
-0.2
434
Normal
-0.2
386
Normal
-0.2
342
Normal
-0.2
141
Tumor
-0.2
258
Normal
-0.2
138
Normal
-0.2
474
Normal
-0.2
965
Tumor
-0.2
366
Normal
-0.3
1021
Tumor
-0.3
435
Tumor
-0.3
111
Normal
-0.3
647
Tumor
-0.3
955
Tumor
-0.3
616
Normal
-0.3
314
Normal
-0.3
777
Tumor
-0.3
353
Tumor
-0.3
217
Tumor
-0.3
664
Normal
-0.3
162
Normal
-0.3
272
Normal
-0.3
446
Normal
-0.3
728
Normal
-0.3
666
Normal
-0.3
641
Tumor
-0.3
396
Normal
-0.3
814
Normal
-0.3
816
Normal
-0.3
462
Normal
-0.3
312
Normal
-0.3
467
Tumor
-0.3
714
Normal
-0.3
464
Normal
-0.3
277
Tumor
-0.3
298
Normal
-0.3
493
Tumor
-0.4
188
Normal
-0.4
331
Tumor
-0.4
724
Normal
-0.4
428
Normal
-0.4
425
Tumor
-0.4
136
Normal
-0.4
223
Tumor
-0.4
268
Normal
-0.4
131
Tumor
-0.4
881
Tumor
-0.4
395
Tumor
-0.4
913
Tumor
-0.4
351
Tumor
-0.4
391
Tumor
-0.4
983
Tumor
-0.4
877
Tumor
-0.5
737
Tumor
-0.5
661
Tumor
-0.5
975
Tumor
-0.5
125
Tumor
-0.5
497
Tumor
-0.5
311
Tumor
-0.5
271
Tumor
-0.5
456
Normal
-0.5
917
Tumor
-0.6
221
Tumor
-0.6
663
Tumor
-0.6
517
Tumor
-0.6
743
Tumor
-0.6
617
Tumor
-0.6
413
Tumor
-0.7
918
Normal
-0.7
943
Tumor
-0.7
671
Tumor
-0.7
545
Tumor
-0.7
283
Tumor
-0.8
921
Tumor
-0.8
343
Tumor
-0.8
463
Tumor
-0.9
817
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
