MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.6 nTPM
HPA Brain:67.0 nTPM
GTEx:20.6 nTPM
FANTOM5:76.8 Scaled Tags Per Million
Pig:116.6 nTPM
Mouse:164.9 nTPM
Allen mouse:9.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 67.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.8
2019 Male, age 18, unknown 85.8
2411 Female, age 72, unknown 65.5
1827 Male, age 72, unknown 61.6
1830 Male, age 51, unknown 59.7
2666 Male, age 74, left hemisphere 59.3
2219 Male, age 76, both hemispheres 57.5
1833 Male, age 53, unknown 57.3
2586 Male, age 75, left hemisphere 56.2
1870 Female, age 42, unknown 52.8
2828 Female, age 72, unknown 52.5
Dorsal raphe nucleus
nTPM: 58.5
2047 Male, age 72, unknown 63.2
1828 Male, age 53, unknown 62.7
2298 Female, age 72, unknown 58.7
2016 Female, age 72, unknown 56.8
2750 Male, age 76, both hemispheres 51.0
Inferior colliculus
nTPM: 67.0
1890 Male, age 53, unknown 72.0
2097 Female, age 72, unknown 69.2
1848 Female, age 42, unknown 65.3
2849 Male, age 72, unknown 61.3
Median raphe nucleus
nTPM: 49.1
2220 Male, age 76, midline 49.1
Periaquaductal grey, anterior
nTPM: 60.2
1947 Male, age 18, unknown 65.0
1795 Male, age 51, unknown 59.3
2502 Female, age 75, unknown 56.3
Periaquaductal grey, dorsal
nTPM: 59.5
1831 Male, age 72, unknown 60.0
2464 Female, age 72, unknown 59.9
1840 Male, age 53, unknown 59.3
2850 Male, age 76, both hemispheres 58.9
Periaquaductal grey, lateral
nTPM: 57.2
2140 Male, age 76, both hemispheres 61.9
2272 Male, age 74, both hemispheres 57.3
2053 Male, age 18, unknown 52.4
Pretectal area
nTPM: 65.3
2007 Male, age 72, unknown 78.4
1816 Male, age 51, unknown 77.1
1944 Female, age 72, unknown 74.3
1817 Female, age 42, unknown 67.7
2273 Male, age 74, both hemispheres 64.9
2316 Male, age 76, right hemisphere 64.1
2667 Female, age 75, unknown 62.3
1815 Male, age 53, unknown 61.0
2825 Male, age 18, unknown 58.4
2224 Female, age 72, unknown 57.4
2407 Male, age 75, both hemispheres 52.8
Red nucleus
nTPM: 59.8
2588 Male, age 74, left hemisphere 68.5
2725 Female, age 75, unknown 65.2
1821 Female, age 72, unknown 62.7
2823 Male, age 76, right hemisphere 62.2
2584 Male, age 75, left hemisphere 59.9
2769 Male, age 72, unknown 59.1
2227 Male, age 72, unknown 58.7
2785 Male, age 18, unknown 58.7
1865 Male, age 51, unknown 56.6
1904 Male, age 53, unknown 56.2
1954 Female, age 42, unknown 56.2
2503 Female, age 72, unknown 52.9
Substantia nigra
nTPM: 62.8
2409 Female, age 72, unknown 71.5
1889 Female, age 72, unknown 70.8
1941 Male, age 53, unknown 69.8
1916 Female, age 42, unknown 69.2
2241 Male, age 72, unknown 62.3
2665 Male, age 74, both hemispheres 60.8
2590 Female, age 75, unknown 60.1
1851 Male, age 51, unknown 59.5
2583 Male, age 75, right hemisphere 52.1
2699 Male, age 18, unknown 51.6
Superior colliculus
nTPM: 58.3
2087 Female, age 72, unknown 73.7
1895 Male, age 76, right hemisphere 69.4
2668 Female, age 75, unknown 61.0
2587 Male, age 74, left hemisphere 60.1
1796 Male, age 53, unknown 59.4
2261 Male, age 18, unknown 55.7
1839 Male, age 51, unknown 54.9
2664 Male, age 75, both hemispheres 51.4
1913 Female, age 42, unknown 50.1
1995 Male, age 72, unknown 47.8
Ventral tegmental area
nTPM: 56.6
2410 Female, age 72, unknown 60.6
1915 Female, age 42, unknown 59.4
2218 Male, age 76, both hemispheres 58.0
1942 Male, age 51, unknown 56.5
2223 Female, age 72, unknown 54.8
2021 Male, age 53, unknown 50.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 20.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.6
Samples: 139

Max nTPM: 87.6
Min nTPM: 6.3
Std nTPM: 9.6
Median nTPM: 18.7
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 87.6
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 46.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 45.2
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 45.1
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 44.1
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 42.3
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 40.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 39.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 37.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 33.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 33.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 76.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 76.8
FF:10158-103A5 76 years, female 76.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 116.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 89.4
Samples: 4

Max nTPM: 119.3
Min nTPM: 65.8
Sample A Female 119.3
Sample B Female 67.9
Sample C Male 104.7
Sample D Male 65.8
Midbrain
nTPM: 109.5
Samples: 4

Max nTPM: 127.4
Min nTPM: 85.0
Sample A Female 98.5
Sample B Female 85.0
Sample C Male 126.9
Sample D Male 127.4
Periaqueductal gray
nTPM: 84.6
Samples: 3

Max nTPM: 96.5
Min nTPM: 76.1
Sample B Female 81.1
Sample C Male 96.5
Sample D Male 76.1
Superior colliculi
nTPM: 116.6
Samples: 4

Max nTPM: 149.5
Min nTPM: 78.5
Sample A Female 130.7
Sample B Female 78.5
Sample C Male 149.5
Sample D Male 107.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 164.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 164.9
Samples: 4

Max nTPM: 168.4
Min nTPM: 161.2
Sample A Male 161.2
Sample B Male 168.4
Sample C Female 166.2
Sample D Female 163.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.7
68632020 Antisense, RP_050125_01_E09, Mouse strain C57BL/6J (56 days, male) 9.7

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