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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLEKHF1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
58.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
50.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
43.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
37.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
31.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
31.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
30.9
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
30.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
29.4
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
28.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
28.7
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
28.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
28.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
27.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
27.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
27.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
27.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
27.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
26.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
26.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
26.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
26.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
26.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
26.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
26.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
25.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
25.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
24.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
24.2
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
23.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
23.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
23.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
22.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
22.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
22.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
22.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
21.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
21.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
21.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
21.4
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
21.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
21.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
21.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
21.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
20.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
20.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
19.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
19.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
19.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
19.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
19.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
19.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
19.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
19.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
18.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
18.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
18.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
18.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
18.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
18.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
18.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
18.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
18.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
18.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
17.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
17.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
17.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
17.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
17.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
17.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
17.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.5
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
17.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
17.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
17.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
17.1
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
16.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
16.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
16.6
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
16.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
16.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
16.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
16.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
15.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
15.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
15.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
15.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
15.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
15.1
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
15.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
14.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
14.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.5
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
14.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
13.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.3
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
13.2
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
13.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
13.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
13.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
12.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
12.8
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
12.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
12.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
12.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
12.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
12.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
12.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
12.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
12.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
11.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
11.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
11.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
11.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
11.6
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
11.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
11.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.4
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
11.4
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
11.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
11.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
11.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
11.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
11.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
11.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
10.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
10.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
10.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
10.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
10.4
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
10.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
10.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.1
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
10.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
10.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
9.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
9.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.7
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
9.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
9.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
9.6
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
9.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
9.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
9.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
9.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
9.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.2
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
9.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.1
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
9.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
9.0
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
8.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
8.2
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
8.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
8.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
8.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
8.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
7.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.8
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.7
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.7
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
7.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
7.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
7.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
7.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
7.6
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
7.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
7.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
7.5
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
7.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
7.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
7.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.3
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
7.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
7.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
7.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
6.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
6.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
6.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
6.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
6.4
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
6.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
6.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
6.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
6.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
6.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
6.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
5.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
5.9
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
5.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
5.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.6
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
5.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.5
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
5.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.3
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
5.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
5.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
4.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
4.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
4.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.3
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
4.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
4.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
4.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
4.0
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
3.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
3.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
3.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
3.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
3.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.4
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
3.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
3.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
3.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
3.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
3.0
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
2.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
2.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.9
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
2.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.7
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
2.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
2.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
2.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
2.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
2.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
2.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
2.1
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
2.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
1.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.8
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.5
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PLEKHF1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.0
Number of samples
231
Samples
Sample
Description
TPM
DO23540
0 years, male, NA, stage:1, alive, 750 days
40.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
39.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
31.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
23.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
21.7
DO45099
0 years, male, NA, stage:3, alive, 1590 days
19.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
19.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
18.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
18.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
17.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
17.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.4
DO45109
0 years, male, NA, stage:2, alive, 1590 days
16.7
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
15.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
15.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
14.9
DO227801
0 years, female, NA, stage:1, alive, 660 days
14.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
14.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.2
DO45143
0 years, male, NA, stage:3, alive, 1290 days
13.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
13.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
13.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
12.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
11.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
11.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
11.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
11.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
11.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
10.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
10.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
10.6
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.6
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.4
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
10.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
10.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
9.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
9.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
9.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
9.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.2
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
9.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
9.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
8.9
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
8.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
8.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
8.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
8.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
8.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
8.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
8.2
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
8.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
7.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.6
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.6
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
7.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
7.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
6.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
6.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
6.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
6.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
6.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
6.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
6.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
6.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.1
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
5.9
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
5.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
5.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
5.5
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
5.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
5.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
5.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.1
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.0
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
4.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
4.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
4.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
4.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
4.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
4.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
3.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
3.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.6
DO45135
0 years, male, NA, stage:1, alive, 1410 days
3.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
3.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
3.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
3.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
3.3
DO50778
0 years, male, NA, stage:4, alive, 630 days
3.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
2.9
DO45201
0 years, male, NA, stage:1, alive, 900 days
2.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
2.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
2.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
2.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
2.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
2.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
2.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
2.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
2.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
2.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
2.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
2.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
2.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
2.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
2.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
2.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.0
DO45185
0 years, male, NA, stage:2, alive, 600 days
2.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
1.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
1.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
1.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
1.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
1.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
1.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
1.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
1.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
1.6
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
1.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
1.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
1.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
1.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
1.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
1.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.2
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
1.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
1.0
DO23545
0 years, male, NA, stage:2, dead, 570 days
1.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.8
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.8
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
0.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.6
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.4
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
857
Tumor
0.9
427
Tumor
0.9
533
Tumor
0.8
557
Tumor
0.8
467
Tumor
0.7
395
Tumor
0.7
573
Tumor
0.7
161
Tumor
0.6
213
Tumor
0.6
913
Tumor
0.6
211
Tumor
0.6
493
Tumor
0.6
567
Tumor
0.6
937
Tumor
0.6
817
Tumor
0.5
375
Tumor
0.5
353
Tumor
0.5
1015
Tumor
0.5
978
Normal
0.5
525
Tumor
0.5
185
Tumor
0.5
852
Normal
0.5
267
Tumor
0.4
966
Normal
0.4
926
Normal
0.4
451
Tumor
0.4
867
Tumor
0.4
434
Normal
0.4
865
Tumor
0.4
536
Normal
0.4
861
Tumor
0.4
915
Tumor
0.4
415
Tumor
0.4
483
Tumor
0.4
218
Normal
0.3
433
Tumor
0.3
563
Tumor
0.3
721
Tumor
0.3
443
Tumor
0.3
277
Tumor
0.3
1031
Tumor
0.3
975
Tumor
0.3
137
Tumor
0.3
663
Tumor
0.3
195
Tumor
0.3
823
Tumor
0.3
141
Tumor
0.3
686
Normal
0.3
113
Tumor
0.3
968
Normal
0.3
343
Tumor
0.3
477
Tumor
0.3
714
Normal
0.3
858
Normal
0.3
916
Normal
0.3
818
Normal
0.3
984
Normal
0.3
188
Normal
0.3
423
Tumor
0.3
661
Tumor
0.3
421
Tumor
0.2
481
Tumor
0.2
186
Normal
0.2
126
Normal
0.2
492
Normal
0.2
696
Normal
0.2
355
Tumor
0.2
617
Tumor
0.2
1021
Tumor
0.2
953
Tumor
0.2
1026
Normal
0.2
368
Normal
0.2
925
Tumor
0.2
445
Tumor
0.2
231
Tumor
0.2
124
Normal
0.2
716
Normal
0.2
344
Normal
0.2
1028
Normal
0.2
352
Normal
0.2
917
Tumor
0.2
217
Tumor
0.2
327
Tumor
0.2
1022
Normal
0.2
147
Tumor
0.2
662
Normal
0.2
1016
Normal
0.2
358
Normal
0.2
824
Normal
0.2
672
Normal
0.2
952
Normal
0.2
341
Tumor
0.2
1041
Tumor
0.2
376
Normal
0.2
524
Normal
0.2
944
Normal
0.2
574
Normal
0.2
223
Tumor
0.2
444
Normal
0.2
468
Normal
0.2
1044
Normal
0.2
497
Tumor
0.2
465
Tumor
0.2
538
Normal
0.1
148
Normal
0.1
628
Normal
0.1
142
Normal
0.1
722
Normal
0.1
278
Normal
0.1
873
Tumor
0.1
724
Normal
0.1
456
Normal
0.1
272
Normal
0.1
128
Normal
0.1
558
Normal
0.1
366
Normal
0.1
976
Normal
0.1
641
Tumor
0.1
914
Normal
0.1
745
Tumor
0.1
432
Normal
0.1
471
Tumor
0.1
816
Normal
0.1
487
Tumor
0.1
461
Tumor
0.1
664
Normal
0.1
365
Tumor
0.1
982
Normal
0.1
298
Normal
0.1
963
Tumor
0.1
342
Normal
0.1
172
Normal
0.1
384
Normal
0.1
564
Normal
0.1
958
Normal
0.1
446
Normal
0.1
192
Normal
0.1
474
Normal
0.1
196
Normal
0.1
191
Tumor
0.1
357
Tumor
0.1
258
Normal
0.1
146
Normal
0.1
528
Normal
0.1
112
Tumor
0.1
362
Normal
0.1
1014
Normal
0.1
918
Normal
0.1
568
Normal
0.1
464
Normal
0.1
354
Normal
0.0
636
Normal
0.0
866
Normal
0.0
1027
Tumor
0.0
515
Tumor
0.0
452
Normal
0.0
881
Tumor
0.0
728
Normal
0.0
516
Normal
0.0
214
Normal
0.0
572
Normal
0.0
312
Normal
0.0
478
Normal
0.0
723
Tumor
0.0
385
Tumor
0.0
455
Tumor
0.0
744
Normal
0.0
1042
Normal
0.0
882
Normal
0.0
222
Normal
0.0
778
Normal
0.0
462
Normal
0.0
232
Normal
0.0
412
Normal
0.0
114
Normal
0.0
262
Normal
0.0
162
Normal
0.0
514
Normal
0.0
297
Tumor
0.0
878
Normal
0.0
616
Normal
0.0
392
Normal
0.0
383
Tumor
0.0
386
Normal
0.0
138
Normal
0.0
954
Normal
0.0
924
Normal
0.0
526
Normal
0.0
884
Normal
0.0
466
Normal
0.0
874
Normal
0.0
261
Tumor
0.0
284
Normal
0.0
393
Tumor
0.0
738
Normal
0.0
491
Tumor
0.0
666
Normal
0.0
498
Normal
0.0
436
Normal
0.0
224
Normal
0.0
554
Normal
-0.1
135
Tumor
-0.1
426
Normal
-0.1
396
Normal
-0.1
111
Normal
-0.1
283
Tumor
-0.1
642
Normal
-0.1
1013
Tumor
-0.1
187
Tumor
-0.1
394
Normal
-0.1
145
Tumor
-0.1
268
Normal
-0.1
1032
Normal
-0.1
414
Normal
-0.1
698
Normal
-0.1
212
Normal
-0.1
286
Normal
-0.1
951
Tumor
-0.1
755
Tumor
-0.1
364
Normal
-0.1
922
Normal
-0.1
422
Normal
-0.1
713
Tumor
-0.1
448
Normal
-0.1
746
Normal
-0.1
221
Tumor
-0.1
955
Tumor
-0.1
482
Normal
-0.1
956
Normal
-0.1
428
Normal
-0.1
494
Normal
-0.1
938
Normal
-0.1
271
Tumor
-0.1
527
Tumor
-0.1
534
Normal
-0.1
488
Normal
-0.1
862
Normal
-0.1
864
Normal
-0.1
285
Tumor
-0.1
518
Normal
-0.1
756
Normal
-0.1
132
Normal
-0.1
472
Normal
-0.1
1043
Tumor
-0.1
388
Normal
-0.1
964
Normal
-0.1
431
Tumor
-0.2
332
Normal
-0.2
546
Normal
-0.2
742
Normal
-0.2
648
Normal
-0.2
424
Normal
-0.2
912
Normal
-0.2
228
Normal
-0.2
136
Normal
-0.2
615
Tumor
-0.2
618
Normal
-0.2
814
Normal
-0.2
356
Normal
-0.2
361
Tumor
-0.2
416
Normal
-0.2
545
Tumor
-0.2
328
Normal
-0.2
786
Normal
-0.2
257
Tumor
-0.2
171
Tumor
-0.2
737
Tumor
-0.2
125
Tumor
-0.2
943
Tumor
-0.2
647
Tumor
-0.2
127
Tumor
-0.2
851
Tumor
-0.2
957
Tumor
-0.2
981
Tumor
-0.2
311
Tumor
-0.2
883
Tumor
-0.2
671
Tumor
-0.2
868
Normal
-0.2
387
Tumor
-0.2
411
Tumor
-0.2
785
Tumor
-0.3
123
Tumor
-0.3
627
Tumor
-0.3
813
Tumor
-0.3
463
Tumor
-0.3
1046
Normal
-0.3
635
Tumor
-0.3
697
Tumor
-0.3
513
Tumor
-0.3
447
Tumor
-0.3
331
Tumor
-0.3
535
Tumor
-0.3
695
Tumor
-0.4
983
Tumor
-0.4
314
Normal
-0.4
435
Tumor
-0.4
911
Tumor
-0.4
685
Tumor
-0.4
367
Tumor
-0.4
391
Tumor
-0.4
665
Tumor
-0.4
977
Tumor
-0.4
523
Tumor
-0.4
484
Normal
-0.4
741
Tumor
-0.5
571
Tumor
-0.5
923
Tumor
-0.5
715
Tumor
-0.5
413
Tumor
-0.5
537
Tumor
-0.5
313
Tumor
-0.5
727
Tumor
-0.5
351
Tumor
-0.5
863
Tumor
-0.6
965
Tumor
-0.6
363
Tumor
-0.6
777
Tumor
-0.6
967
Tumor
-0.6
921
Tumor
-0.6
553
Tumor
-0.7
1045
Tumor
-0.7
425
Tumor
-0.7
517
Tumor
-0.7
877
Tumor
-0.8
1025
Tumor
-0.8
473
Tumor
-0.8
131
Tumor
-0.8
743
Tumor
-0.9
227
Tumor
-0.9
815
Tumor
-1.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
