MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.7 nTPM
HPA Brain:39.7 nTPM
GTEx:15.7 nTPM
FANTOM5:18.3 Scaled Tags Per Million
Pig:44.6 nTPM
Mouse:12.3 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 39.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.0
2586 Male, age 75, left hemisphere 61.0
2828 Female, age 72, unknown 41.9
1827 Male, age 72, unknown 38.9
2666 Male, age 74, left hemisphere 38.4
2411 Female, age 72, unknown 36.4
1833 Male, age 53, unknown 35.9
1830 Male, age 51, unknown 35.8
1870 Female, age 42, unknown 35.8
2019 Male, age 18, unknown 29.5
2219 Male, age 76, both hemispheres 26.1
Dorsal raphe nucleus
nTPM: 37.5
2047 Male, age 72, unknown 43.4
1828 Male, age 53, unknown 39.3
2016 Female, age 72, unknown 36.8
2298 Female, age 72, unknown 35.4
2750 Male, age 76, both hemispheres 32.5
Inferior colliculus
nTPM: 37.0
2849 Male, age 72, unknown 39.3
1848 Female, age 42, unknown 39.2
1890 Male, age 53, unknown 35.7
2097 Female, age 72, unknown 33.5
Median raphe nucleus
nTPM: 35.5
2220 Male, age 76, midline 35.5
Periaquaductal grey, anterior
nTPM: 39.7
2502 Female, age 75, unknown 41.6
1947 Male, age 18, unknown 40.7
1795 Male, age 51, unknown 36.9
Periaquaductal grey, dorsal
nTPM: 36.2
1840 Male, age 53, unknown 39.7
2464 Female, age 72, unknown 37.2
2850 Male, age 76, both hemispheres 36.2
1831 Male, age 72, unknown 31.6
Periaquaductal grey, lateral
nTPM: 33.7
2140 Male, age 76, both hemispheres 37.0
2053 Male, age 18, unknown 36.4
2272 Male, age 74, both hemispheres 27.7
Pretectal area
nTPM: 32.3
2825 Male, age 18, unknown 37.7
2407 Male, age 75, both hemispheres 35.4
1817 Female, age 42, unknown 34.5
1816 Male, age 51, unknown 32.4
2667 Female, age 75, unknown 32.4
1815 Male, age 53, unknown 31.5
2007 Male, age 72, unknown 31.2
1944 Female, age 72, unknown 31.1
2316 Male, age 76, right hemisphere 30.9
2224 Female, age 72, unknown 30.5
2273 Male, age 74, both hemispheres 27.9
Red nucleus
nTPM: 36.0
2584 Male, age 75, left hemisphere 45.5
1954 Female, age 42, unknown 39.0
2588 Male, age 74, left hemisphere 38.9
1821 Female, age 72, unknown 37.6
2769 Male, age 72, unknown 37.0
2227 Male, age 72, unknown 36.7
1865 Male, age 51, unknown 35.7
1904 Male, age 53, unknown 34.9
2503 Female, age 72, unknown 33.4
2725 Female, age 75, unknown 32.6
2823 Male, age 76, right hemisphere 31.6
2785 Male, age 18, unknown 29.4
Substantia nigra
nTPM: 36.0
2583 Male, age 75, right hemisphere 40.9
1916 Female, age 42, unknown 40.1
2699 Male, age 18, unknown 39.6
2665 Male, age 74, both hemispheres 39.3
2590 Female, age 75, unknown 36.1
1851 Male, age 51, unknown 36.0
1941 Male, age 53, unknown 33.1
2241 Male, age 72, unknown 32.7
2409 Female, age 72, unknown 31.3
1889 Female, age 72, unknown 31.2
Superior colliculus
nTPM: 34.7
2664 Male, age 75, both hemispheres 48.9
2261 Male, age 18, unknown 36.5
1839 Male, age 51, unknown 36.2
2668 Female, age 75, unknown 35.6
1796 Male, age 53, unknown 34.6
2587 Male, age 74, left hemisphere 33.4
1913 Female, age 42, unknown 32.2
1995 Male, age 72, unknown 32.2
2087 Female, age 72, unknown 30.4
1895 Male, age 76, right hemisphere 27.2
Ventral tegmental area
nTPM: 35.5
1942 Male, age 51, unknown 37.2
2021 Male, age 53, unknown 36.8
1915 Female, age 42, unknown 36.1
2218 Male, age 76, both hemispheres 35.4
2410 Female, age 72, unknown 33.8
2223 Female, age 72, unknown 33.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 15.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.7
Samples: 139

Max nTPM: 27.6
Min nTPM: 10.4
Std nTPM: 3.1
Median nTPM: 14.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 27.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 27.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 24.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 23.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 23.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 22.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 22.7
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 22.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 20.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 20.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 20.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 18.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.3
FF:10158-103A5 76 years, female 18.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 44.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 33.8
Samples: 4

Max nTPM: 43.3
Min nTPM: 28.3
Sample A Female 31.4
Sample B Female 43.3
Sample C Male 32.3
Sample D Male 28.3
Midbrain
nTPM: 28.8
Samples: 4

Max nTPM: 33.3
Min nTPM: 25.2
Sample A Female 30.5
Sample B Female 26.0
Sample C Male 33.3
Sample D Male 25.2
Periaqueductal gray
nTPM: 25.5
Samples: 3

Max nTPM: 29.2
Min nTPM: 23.4
Sample B Female 23.4
Sample C Male 29.2
Sample D Male 23.9
Superior colliculi
nTPM: 44.6
Samples: 4

Max nTPM: 80.1
Min nTPM: 26.8
Sample A Female 42.6
Sample B Female 80.1
Sample C Male 26.8
Sample D Male 28.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 12.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.3
Samples: 4

Max nTPM: 12.7
Min nTPM: 11.7
Sample A Male 12.2
Sample B Male 11.7
Sample C Female 12.6
Sample D Female 12.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
68498552 Antisense, RP_050113_02_A10, Mouse strain C57BL/6J (56 days, male) 0.9

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