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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ASPG is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
19.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
153.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
143.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
141.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
141.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
123.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
120.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
117.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
114.5
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
102.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
98.1
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
96.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
96.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
90.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
89.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
88.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
84.4
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
78.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
77.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
77.5
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
76.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
75.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
73.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
72.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
71.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
70.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
69.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
69.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
68.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
68.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
61.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
61.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
61.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
59.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
58.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
58.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
57.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
55.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
53.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
52.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
52.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
52.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
52.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
51.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
51.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
51.1
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
51.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
50.7
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
48.4
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
48.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
48.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
47.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
46.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
45.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
44.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
43.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
42.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
42.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
40.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
40.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
39.6
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
39.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
39.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
38.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
38.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
37.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
36.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
34.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
34.1
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
34.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
33.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
33.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
33.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
31.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
31.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
31.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
31.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
30.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
30.8
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
30.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
30.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
30.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
30.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
30.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
29.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
28.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
28.5
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
28.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
28.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
28.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
28.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
28.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
27.9
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
27.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
27.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
27.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
26.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
26.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
26.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
25.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
25.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
25.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
24.4
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
24.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
24.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
24.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
23.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
23.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
23.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
23.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
23.0
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
22.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
22.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
22.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
22.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
21.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
21.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
20.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
20.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
19.7
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
19.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
19.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
19.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
19.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
19.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
18.3
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
17.8
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
17.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.6
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
17.4
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
17.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
16.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
16.8
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
16.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
15.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
15.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
15.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
15.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
14.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
14.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
14.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
14.4
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
14.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
13.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
13.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
13.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
13.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
12.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
12.5
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
11.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
11.1
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
10.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
10.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
10.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
10.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
10.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
10.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
9.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
9.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
8.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.5
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
8.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.1
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.5
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
7.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
7.4
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.3
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
7.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
6.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
6.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
5.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
5.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
5.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.3
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.5
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
4.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
4.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
4.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
3.9
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
3.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
3.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
3.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
3.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
3.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
3.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
3.3
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
3.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
3.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
2.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
2.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
2.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.6
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
2.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
2.4
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
2.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
2.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
2.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
2.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
2.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
2.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
2.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
2.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
2.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
2.0
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
1.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
1.4
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
1.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
1.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
1.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
1.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
0.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
0.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.6
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.6
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.5
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.1
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
0.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
0.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.0
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.0
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.0
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ASPG is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.9
Number of samples
231
Samples
Sample
Description
TPM
DO48674
0 years, male, NA, stage:2, alive, 1260 days
66.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
65.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
54.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
53.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
47.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
44.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
42.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
42.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
38.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
38.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
37.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
37.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
37.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
36.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
36.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
36.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
34.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
33.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
31.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
31.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
30.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
29.6
DO45253
0 years, male, NA, stage:2, alive, 870 days
28.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
28.4
DO48760
0 years, female, NA, stage:2, alive, 690 days
27.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
26.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
25.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
25.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
24.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
24.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
23.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
23.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
22.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
22.1
DO45203
0 years, female, NA, stage:2, alive, 1170 days
21.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
21.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
21.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
20.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
20.2
DO45181
0 years, female, NA, stage:2, alive, 1200 days
20.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
19.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
19.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
18.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
17.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
17.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
17.2
DO48712
0 years, male, NA, stage:2, alive, 810 days
16.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
15.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
14.9
DO45109
0 years, male, NA, stage:2, alive, 1590 days
14.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
14.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
13.0
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
12.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.9
DO45213
0 years, male, NA, stage:1, alive, 1200 days
11.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
11.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.9
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
9.9
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
9.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
9.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
9.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.5
DO50803
0 years, female, NA, stage:1, alive, 540 days
8.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
8.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
8.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
8.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
7.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
7.9
DO23552
0 years, female, NA, stage:1, alive, 810 days
7.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
7.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
7.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
5.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
5.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
5.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
5.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
5.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
4.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
4.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
4.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
4.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
3.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
3.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
3.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
3.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
3.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
3.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
3.0
DO45211
0 years, male, NA, stage:3, alive, 240 days
3.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
2.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
2.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
2.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
2.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
2.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
2.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
2.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
2.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
1.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
1.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
1.7
DO45209
0 years, male, NA, stage:4, alive, 1350 days
1.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
1.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
1.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.5
DO50806
0 years, male, NA, stage:4, alive, 540 days
1.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
1.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
1.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
1.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
1.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
1.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
1.1
DO45227
0 years, female, NA, stage:2, alive, 1020 days
1.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
1.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
1.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
1.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
1.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
1.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
1.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
1.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
1.0
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
0.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
0.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
0.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
0.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
0.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.4
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
0.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.3
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.2
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.2
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.1
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.1
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.0
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
0.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
0.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.0
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
111
Normal
1.2
436
Normal
1.2
742
Normal
1.1
964
Normal
1.1
392
Normal
1.1
196
Normal
1.1
232
Normal
1.0
666
Normal
1.0
862
Normal
1.0
132
Normal
1.0
723
Tumor
1.0
394
Normal
1.0
358
Normal
1.0
388
Normal
1.0
464
Normal
1.0
824
Normal
1.0
342
Normal
1.0
664
Normal
1.0
866
Normal
1.0
756
Normal
1.0
162
Normal
1.0
136
Normal
1.0
466
Normal
1.0
568
Normal
1.0
314
Normal
1.0
616
Normal
0.9
222
Normal
0.9
482
Normal
0.9
376
Normal
0.9
356
Normal
0.9
332
Normal
0.9
446
Normal
0.9
1014
Normal
0.9
384
Normal
0.9
114
Normal
0.9
728
Normal
0.9
432
Normal
0.9
424
Normal
0.9
172
Normal
0.9
148
Normal
0.9
1022
Normal
0.9
298
Normal
0.9
672
Normal
0.9
618
Normal
0.9
698
Normal
0.8
628
Normal
0.8
528
Normal
0.8
786
Normal
0.8
944
Normal
0.8
878
Normal
0.8
414
Normal
0.8
448
Normal
0.8
914
Normal
0.8
778
Normal
0.8
428
Normal
0.8
186
Normal
0.8
472
Normal
0.8
1026
Normal
0.7
396
Normal
0.7
218
Normal
0.7
1032
Normal
0.7
976
Normal
0.7
858
Normal
0.7
468
Normal
0.7
1016
Normal
0.7
696
Normal
0.7
526
Normal
0.6
882
Normal
0.6
352
Normal
0.6
1044
Normal
0.6
278
Normal
0.6
228
Normal
0.6
364
Normal
0.6
426
Normal
0.6
146
Normal
0.6
938
Normal
0.6
722
Normal
0.6
344
Normal
0.6
366
Normal
0.6
128
Normal
0.6
564
Normal
0.6
864
Normal
0.6
368
Normal
0.6
354
Normal
0.6
922
Normal
0.6
488
Normal
0.6
648
Normal
0.5
554
Normal
0.5
924
Normal
0.5
884
Normal
0.5
636
Normal
0.5
716
Normal
0.5
978
Normal
0.5
984
Normal
0.5
284
Normal
0.5
126
Normal
0.5
312
Normal
0.5
642
Normal
0.5
952
Normal
0.5
462
Normal
0.5
1046
Normal
0.5
818
Normal
0.4
572
Normal
0.4
286
Normal
0.4
686
Normal
0.4
386
Normal
0.4
926
Normal
0.4
422
Normal
0.4
744
Normal
0.4
444
Normal
0.4
816
Normal
0.4
518
Normal
0.4
918
Normal
0.4
474
Normal
0.4
484
Normal
0.4
362
Normal
0.4
662
Normal
0.3
142
Normal
0.3
227
Tumor
0.3
212
Normal
0.3
188
Normal
0.3
494
Normal
0.3
713
Tumor
0.3
954
Normal
0.3
258
Normal
0.3
456
Normal
0.3
262
Normal
0.3
268
Normal
0.2
857
Tumor
0.2
124
Normal
0.2
214
Normal
0.2
514
Normal
0.2
868
Normal
0.2
968
Normal
0.2
224
Normal
0.2
558
Normal
0.2
738
Normal
0.2
478
Normal
0.2
412
Normal
0.2
353
Tumor
0.2
272
Normal
0.1
958
Normal
0.1
912
Normal
0.1
435
Tumor
0.1
546
Normal
0.1
534
Normal
0.1
452
Normal
0.1
515
Tumor
0.1
1028
Normal
0.1
138
Normal
0.1
714
Normal
0.1
145
Tumor
0.1
746
Normal
0.0
434
Normal
0.0
423
Tumor
0.0
574
Normal
0.0
217
Tumor
0.0
192
Normal
0.0
498
Normal
0.0
516
Normal
0.0
916
Normal
0.0
982
Normal
0.0
1042
Normal
-0.1
481
Tumor
-0.1
955
Tumor
-0.1
328
Normal
-0.1
492
Normal
-0.1
433
Tumor
-0.1
956
Normal
-0.1
852
Normal
-0.1
413
Tumor
-0.2
195
Tumor
-0.2
513
Tumor
-0.2
112
Tumor
-0.2
191
Tumor
-0.3
823
Tumor
-0.3
267
Tumor
-0.3
536
Normal
-0.3
571
Tumor
-0.3
538
Normal
-0.3
617
Tumor
-0.3
361
Tumor
-0.3
223
Tumor
-0.4
874
Normal
-0.4
727
Tumor
-0.4
873
Tumor
-0.4
113
Tumor
-0.4
615
Tumor
-0.4
187
Tumor
-0.5
141
Tumor
-0.5
627
Tumor
-0.5
365
Tumor
-0.5
127
Tumor
-0.5
493
Tumor
-0.5
913
Tumor
-0.6
416
Normal
-0.6
137
Tumor
-0.6
343
Tumor
-0.6
341
Tumor
-0.6
721
Tumor
-0.6
383
Tumor
-0.6
221
Tumor
-0.6
465
Tumor
-0.6
491
Tumor
-0.6
563
Tumor
-0.6
467
Tumor
-0.6
863
Tumor
-0.6
135
Tumor
-0.7
524
Normal
-0.7
185
Tumor
-0.7
641
Tumor
-0.7
1025
Tumor
-0.7
967
Tumor
-0.7
814
Normal
-0.7
445
Tumor
-0.7
161
Tumor
-0.7
375
Tumor
-0.7
327
Tumor
-0.7
421
Tumor
-0.7
125
Tumor
-0.8
1043
Tumor
-0.8
363
Tumor
-0.8
147
Tumor
-0.8
447
Tumor
-0.8
357
Tumor
-0.8
427
Tumor
-0.8
393
Tumor
-0.8
695
Tumor
-0.8
213
Tumor
-0.8
231
Tumor
-0.8
1045
Tumor
-0.8
1027
Tumor
-0.8
443
Tumor
-0.8
966
Normal
-0.8
917
Tumor
-0.8
557
Tumor
-0.8
277
Tumor
-0.8
431
Tumor
-0.8
367
Tumor
-0.8
635
Tumor
-0.9
867
Tumor
-0.9
387
Tumor
-0.9
171
Tumor
-0.9
257
Tumor
-0.9
131
Tumor
-0.9
573
Tumor
-0.9
851
Tumor
-0.9
697
Tumor
-0.9
745
Tumor
-0.9
463
Tumor
-0.9
123
Tumor
-0.9
261
Tumor
-1.0
331
Tumor
-1.0
911
Tumor
-1.0
724
Normal
-1.0
755
Tumor
-1.0
663
Tumor
-1.0
391
Tumor
-1.0
313
Tumor
-1.0
567
Tumor
-1.0
517
Tumor
-1.1
813
Tumor
-1.1
647
Tumor
-1.1
665
Tumor
-1.1
411
Tumor
-1.1
461
Tumor
-1.1
283
Tumor
-1.1
881
Tumor
-1.1
877
Tumor
-1.1
425
Tumor
-1.1
351
Tumor
-1.1
715
Tumor
-1.1
975
Tumor
-1.1
981
Tumor
-1.1
671
Tumor
-1.1
451
Tumor
-1.1
861
Tumor
-1.1
523
Tumor
-1.1
943
Tumor
-1.1
271
Tumor
-1.2
785
Tumor
-1.2
395
Tumor
-1.2
533
Tumor
-1.2
297
Tumor
-1.2
737
Tumor
-1.2
385
Tumor
-1.2
1041
Tumor
-1.2
285
Tumor
-1.2
483
Tumor
-1.2
817
Tumor
-1.2
525
Tumor
-1.2
865
Tumor
-1.2
311
Tumor
-1.2
415
Tumor
-1.2
741
Tumor
-1.2
743
Tumor
-1.2
477
Tumor
-1.2
883
Tumor
-1.2
1013
Tumor
-1.3
211
Tumor
-1.3
963
Tumor
-1.3
777
Tumor
-1.3
815
Tumor
-1.3
1015
Tumor
-1.3
527
Tumor
-1.3
1031
Tumor
-1.3
553
Tumor
-1.3
497
Tumor
-1.3
937
Tumor
-1.4
487
Tumor
-1.4
685
Tumor
-1.4
977
Tumor
-1.4
535
Tumor
-1.4
661
Tumor
-1.4
545
Tumor
-1.5
925
Tumor
-1.5
455
Tumor
-1.5
355
Tumor
-1.5
1021
Tumor
-1.5
915
Tumor
-1.5
923
Tumor
-1.5
921
Tumor
-1.6
953
Tumor
-1.6
983
Tumor
-1.6
473
Tumor
-1.7
471
Tumor
-1.7
957
Tumor
-1.8
537
Tumor
-1.8
965
Tumor
-1.9
951
Tumor
-2.2
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
