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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DPCD is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
10.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
82.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
48.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
46.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
45.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
43.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
39.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
35.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
34.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
33.6
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
32.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
31.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
30.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
30.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
29.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
27.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
27.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
26.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
26.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
25.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
25.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
24.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
24.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
24.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
23.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
23.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
23.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
23.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
22.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
22.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
22.1
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
21.5
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
21.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
21.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
20.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
20.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
19.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
19.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
19.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
18.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
18.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
18.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
18.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
17.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
17.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
17.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
17.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
16.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
16.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
16.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
16.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
15.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
15.4
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
15.3
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
15.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
15.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
15.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
14.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
14.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
14.7
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
14.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
14.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
14.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
13.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
13.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
13.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
13.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
12.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
12.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
12.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
12.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
11.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
11.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
11.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
11.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
11.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
11.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
11.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
10.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
10.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
10.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
10.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
10.5
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
10.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
10.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
10.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
10.3
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
10.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
10.2
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
10.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
10.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
9.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
9.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
9.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
9.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
9.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
9.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
9.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
9.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
9.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
9.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
9.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
9.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
9.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
9.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
8.9
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
8.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
8.8
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.7
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
8.7
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
8.4
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
8.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
8.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
8.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
8.1
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.1
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
8.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
8.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
8.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
7.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
7.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
7.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
7.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
7.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
7.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
7.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
7.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
7.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
7.6
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
7.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
7.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.4
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
7.4
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
7.3
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
7.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
7.3
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
7.3
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
7.2
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
7.2
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
7.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
7.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
7.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
7.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
7.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
6.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
6.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
6.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
6.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
6.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
6.6
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
6.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
6.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
6.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
6.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
6.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
6.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
6.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.4
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.4
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
6.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.2
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
6.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
6.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
6.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
6.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
6.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
6.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
6.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
5.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
5.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
5.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
5.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
5.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
5.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.3
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
5.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.2
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
5.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.9
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
4.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
4.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
4.8
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
4.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.8
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
4.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
4.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
4.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
4.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.4
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
4.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
4.4
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
4.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.3
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
4.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
4.3
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
4.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
4.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
4.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
4.1
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
4.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
4.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
4.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
3.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
3.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.5
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
3.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
3.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.1
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
2.9
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
2.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
2.2
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
2.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DPCD is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.9
Number of samples
231
Samples
Sample
Description
TPM
DO45285
0 years, male, NA, stage:3, alive, 480 days
108.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
73.1
DO45299
0 years, female, NA, stage:1, alive, 1440 days
40.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
37.4
DO48747
0 years, male, NA, stage:3, alive, 540 days
34.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
29.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
27.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
25.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
25.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
24.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
23.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
22.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
22.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
21.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
20.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
18.7
DO50825
0 years, male, NA, stage:2, alive, 390 days
18.4
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
17.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
15.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
15.2
DO23526
0 years, male, NA, stage:3, alive, 1050 days
15.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
15.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
14.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
13.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.4
DO45097
0 years, male, NA, stage:3, alive, 1620 days
12.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
12.3
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
12.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
11.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
11.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
10.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
10.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
10.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
9.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.8
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
9.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
9.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
9.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.4
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.9
DO45127
0 years, male, NA, stage:3, dead, 420 days
7.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
7.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.5
DO45199
0 years, female, NA, stage:2, alive, 1350 days
7.4
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
7.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
7.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
7.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.9
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
6.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
6.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
6.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.6
DO23511
0 years, female, NA, stage:3, dead, 180 days
6.6
DO50799
0 years, female, NA, stage:2, alive, 540 days
6.6
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.5
DO23547
0 years, male, NA, stage:1, alive, 1020 days
6.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.2
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
6.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
6.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
6.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
6.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
6.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
6.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
6.0
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
5.9
DO50845
0 years, male, NA, stage:3, alive, 210 days
5.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
5.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
5.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
5.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.6
DO48727
0 years, female, NA, stage:2, dead, 390 days
5.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.6
DO48719
0 years, male, NA, stage:2, alive, 690 days
5.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
5.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.5
DO50785
0 years, male, NA, stage:4, dead, 90 days
5.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
5.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
5.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
5.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
5.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
4.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
4.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
4.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
4.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
4.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
4.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
4.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
4.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
4.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
4.6
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.5
DO45113
0 years, male, NA, stage:3, alive, 1560 days
4.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
4.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
4.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
4.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
4.4
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
4.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
4.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
4.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
4.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
4.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
3.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
3.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
3.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
3.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
3.7
DO50807
0 years, male, NA, stage:1, alive, 540 days
3.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
3.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
3.6
DO48721
0 years, female, NA, stage:1, alive, 900 days
3.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
3.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
3.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
3.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
3.5
DO50819
0 years, female, NA, stage:2, alive, 510 days
3.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
3.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.3
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
3.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
3.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
3.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
3.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
3.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
3.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
3.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.0
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
3.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
2.8
DO45149
0 years, female, NA, stage:2, alive, 1260 days
2.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
2.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
2.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
2.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.6
DO45207
0 years, male, NA, stage:1, alive, 1050 days
2.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
2.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
2.6
DO45265
0 years, male, NA, stage:3, alive, 1020 days
2.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
2.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
2.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
2.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
2.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
2.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
2.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
2.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.0
DO45215
0 years, male, NA, stage:2, alive, 1170 days
2.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
2.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
1.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
1.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
1.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
1.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
1.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
1.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
1.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
1.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
351
Tumor
2.1
1021
Tumor
1.5
285
Tumor
1.4
917
Tumor
1.4
385
Tumor
1.4
1025
Tumor
1.3
567
Tumor
1.3
131
Tumor
1.3
921
Tumor
1.3
311
Tumor
1.2
123
Tumor
1.1
283
Tumor
1.1
715
Tumor
1.1
685
Tumor
1.1
125
Tumor
1.0
286
Normal
0.9
395
Tumor
0.9
965
Tumor
0.9
545
Tumor
0.8
535
Tumor
0.8
1041
Tumor
0.8
331
Tumor
0.8
211
Tumor
0.8
473
Tumor
0.8
815
Tumor
0.7
937
Tumor
0.7
967
Tumor
0.7
877
Tumor
0.7
425
Tumor
0.7
391
Tumor
0.7
983
Tumor
0.7
387
Tumor
0.6
915
Tumor
0.6
327
Tumor
0.6
865
Tumor
0.6
113
Tumor
0.6
212
Normal
0.6
231
Tumor
0.5
737
Tumor
0.5
257
Tumor
0.5
393
Tumor
0.5
465
Tumor
0.5
697
Tumor
0.5
741
Tumor
0.5
523
Tumor
0.5
224
Normal
0.5
617
Tumor
0.5
755
Tumor
0.5
925
Tumor
0.4
297
Tumor
0.4
261
Tumor
0.4
724
Normal
0.4
727
Tumor
0.4
863
Tumor
0.4
223
Tumor
0.4
743
Tumor
0.4
478
Normal
0.4
982
Normal
0.4
463
Tumor
0.4
554
Normal
0.4
444
Normal
0.4
447
Tumor
0.4
451
Tumor
0.3
364
Normal
0.3
861
Tumor
0.3
483
Tumor
0.3
498
Normal
0.3
571
Tumor
0.3
353
Tumor
0.3
911
Tumor
0.3
328
Normal
0.3
517
Tumor
0.3
981
Tumor
0.3
221
Tumor
0.3
1042
Normal
0.3
171
Tumor
0.3
573
Tumor
0.3
355
Tumor
0.2
363
Tumor
0.2
228
Normal
0.2
756
Normal
0.2
493
Tumor
0.2
284
Normal
0.2
1015
Tumor
0.2
268
Normal
0.2
218
Normal
0.2
416
Normal
0.2
455
Tumor
0.2
185
Tumor
0.2
375
Tumor
0.2
472
Normal
0.2
415
Tumor
0.2
388
Normal
0.1
492
Normal
0.1
487
Tumor
0.1
394
Normal
0.1
145
Tumor
0.1
881
Tumor
0.1
367
Tumor
0.1
361
Tumor
0.1
963
Tumor
0.1
943
Tumor
0.1
1027
Tumor
0.1
536
Normal
0.1
528
Normal
0.1
563
Tumor
0.1
1016
Normal
0.1
574
Normal
0.1
538
Normal
0.1
188
Normal
0.1
977
Tumor
0.1
313
Tumor
0.1
428
Normal
0.1
913
Tumor
0.1
916
Normal
0.1
424
Normal
0.1
558
Normal
0.0
1046
Normal
0.0
227
Tumor
0.0
984
Normal
0.0
786
Normal
0.0
814
Normal
0.0
1014
Normal
0.0
533
Tumor
0.0
497
Tumor
0.0
553
Tumor
0.0
356
Normal
0.0
484
Normal
0.0
467
Tumor
0.0
526
Normal
0.0
396
Normal
0.0
564
Normal
0.0
386
Normal
0.0
615
Tumor
0.0
924
Normal
0.0
975
Tumor
0.0
696
Normal
0.0
482
Normal
0.0
262
Normal
0.0
524
Normal
0.0
456
Normal
0.0
516
Normal
0.0
642
Normal
0.0
518
Normal
0.0
1045
Tumor
0.0
426
Normal
0.0
126
Normal
0.0
568
Normal
0.0
923
Tumor
0.0
421
Tumor
0.0
873
Tumor
0.0
1028
Normal
-0.1
127
Tumor
-0.1
1043
Tumor
-0.1
195
Tumor
-0.1
217
Tumor
-0.1
412
Normal
-0.1
852
Normal
-0.1
352
Normal
-0.1
464
Normal
-0.1
491
Tumor
-0.1
272
Normal
-0.1
778
Normal
-0.1
884
Normal
-0.1
312
Normal
-0.1
713
Tumor
-0.1
1032
Normal
-0.1
1031
Tumor
-0.1
392
Normal
-0.1
867
Tumor
-0.1
912
Normal
-0.1
1026
Normal
-0.1
187
Tumor
-0.1
777
Tumor
-0.1
383
Tumor
-0.1
422
Normal
-0.1
978
Normal
-0.1
258
Normal
-0.1
148
Normal
-0.1
147
Tumor
-0.1
572
Normal
-0.1
354
Normal
-0.1
1022
Normal
-0.1
146
Normal
-0.2
714
Normal
-0.2
132
Normal
-0.2
136
Normal
-0.2
488
Normal
-0.2
462
Normal
-0.2
213
Tumor
-0.2
192
Normal
-0.2
138
Normal
-0.2
918
Normal
-0.2
443
Tumor
-0.2
267
Tumor
-0.2
232
Normal
-0.2
481
Tumor
-0.2
695
Tumor
-0.2
474
Normal
-0.2
435
Tumor
-0.2
141
Tumor
-0.2
546
Normal
-0.2
433
Tumor
-0.2
956
Normal
-0.2
414
Normal
-0.2
954
Normal
-0.2
883
Tumor
-0.2
525
Tumor
-0.2
494
Normal
-0.2
723
Tumor
-0.2
722
Normal
-0.2
468
Normal
-0.2
445
Tumor
-0.2
214
Normal
-0.2
817
Tumor
-0.2
1044
Normal
-0.2
868
Normal
-0.2
343
Tumor
-0.2
745
Tumor
-0.2
874
Normal
-0.2
866
Normal
-0.2
314
Normal
-0.2
114
Normal
-0.2
926
Normal
-0.2
818
Normal
-0.2
864
Normal
-0.2
514
Normal
-0.2
858
Normal
-0.2
721
Tumor
-0.2
882
Normal
-0.2
142
Normal
-0.2
277
Tumor
-0.3
698
Normal
-0.3
513
Tumor
-0.3
466
Normal
-0.3
384
Normal
-0.3
137
Tumor
-0.3
641
Tumor
-0.3
172
Normal
-0.3
111
Normal
-0.3
477
Tumor
-0.3
271
Tumor
-0.3
628
Normal
-0.3
716
Normal
-0.3
816
Normal
-0.3
537
Tumor
-0.3
976
Normal
-0.3
162
Normal
-0.3
922
Normal
-0.3
823
Tumor
-0.3
222
Normal
-0.3
124
Normal
-0.3
824
Normal
-0.3
966
Normal
-0.3
427
Tumor
-0.3
413
Tumor
-0.3
368
Normal
-0.3
635
Tumor
-0.3
953
Tumor
-0.3
857
Tumor
-0.3
332
Normal
-0.3
785
Tumor
-0.3
452
Normal
-0.3
851
Tumor
-0.3
128
Normal
-0.3
446
Normal
-0.3
534
Normal
-0.3
411
Tumor
-0.3
471
Tumor
-0.3
186
Normal
-0.3
964
Normal
-0.3
951
Tumor
-0.4
357
Tumor
-0.4
196
Normal
-0.4
191
Tumor
-0.4
686
Normal
-0.4
362
Normal
-0.4
557
Tumor
-0.4
616
Normal
-0.4
968
Normal
-0.4
461
Tumor
-0.4
135
Tumor
-0.4
448
Normal
-0.4
365
Tumor
-0.4
738
Normal
-0.4
914
Normal
-0.4
813
Tumor
-0.4
366
Normal
-0.4
515
Tumor
-0.4
862
Normal
-0.4
746
Normal
-0.4
955
Tumor
-0.4
278
Normal
-0.5
432
Normal
-0.5
527
Tumor
-0.5
161
Tumor
-0.5
938
Normal
-0.5
944
Normal
-0.5
952
Normal
-0.5
958
Normal
-0.5
376
Normal
-0.5
431
Tumor
-0.5
344
Normal
-0.5
618
Normal
-0.5
728
Normal
-0.5
742
Normal
-0.5
341
Tumor
-0.5
878
Normal
-0.6
342
Normal
-0.6
358
Normal
-0.6
744
Normal
-0.6
298
Normal
-0.6
436
Normal
-0.6
423
Tumor
-0.6
434
Normal
-0.6
1013
Tumor
-0.7
636
Normal
-0.7
627
Tumor
-0.8
112
Tumor
-0.9
957
Tumor
-1.0
647
Tumor
N/A
648
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
663
Tumor
N/A
664
Normal
N/A
665
Tumor
N/A
666
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
