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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IKBIP is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
41.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
38.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
22.8
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
22.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
21.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
21.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
21.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
21.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
21.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
20.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
20.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
19.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
19.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
19.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
18.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
18.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
18.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
17.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
17.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
17.2
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
17.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
17.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
16.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
16.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
16.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.8
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
15.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
15.0
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
14.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
14.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
14.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
14.3
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
14.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
14.2
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
14.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
14.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
13.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
13.9
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
13.8
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
13.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
13.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
13.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
13.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.8
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
12.5
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
11.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
11.4
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
11.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
11.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.3
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
11.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
11.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
11.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
11.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
11.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
10.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
10.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
10.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
10.7
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
10.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
10.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
10.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
10.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
10.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
10.3
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
10.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
10.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
10.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
10.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
10.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
10.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
9.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
9.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
9.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
9.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
9.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
9.4
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
9.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
9.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
9.2
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
9.1
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
9.1
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
9.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
9.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
8.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
8.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
8.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
8.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
8.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.6
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
8.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
8.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
8.5
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
8.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
8.4
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
8.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
8.2
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
8.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
8.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
7.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
7.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
7.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
7.6
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
7.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
7.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
7.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
7.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
7.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
7.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
7.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.1
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
7.1
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
7.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
6.9
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.9
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
6.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
6.7
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.7
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
6.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
6.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.5
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
6.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
6.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
6.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
6.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
6.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
6.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
6.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
6.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
5.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
5.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
5.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
5.9
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
5.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
5.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
5.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
5.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
5.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
5.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
5.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
5.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
5.6
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
5.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
5.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
5.5
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
5.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
5.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
5.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
5.2
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
5.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
5.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
5.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
5.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
5.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
5.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
5.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
5.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
5.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
5.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
4.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
4.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
4.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
4.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
4.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
4.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
4.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.6
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
4.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
4.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
4.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
4.5
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
4.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
4.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
4.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.4
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
4.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
4.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
4.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
4.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
4.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
4.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
4.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
4.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
4.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
3.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
3.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
3.9
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.8
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
3.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
3.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.8
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
3.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
3.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
3.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.8
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
3.7
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
3.7
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
3.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
3.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.6
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
3.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
3.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
3.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
3.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.4
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.4
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
3.3
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
3.3
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
3.2
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
3.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
3.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
3.2
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.2
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
3.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
3.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.9
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
2.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.8
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
2.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
2.7
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.7
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
2.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
2.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2.5
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
2.4
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
2.4
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.3
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
2.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
1.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
1.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
1.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
IKBIP is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.9
Number of samples
231
Samples
Sample
Description
TPM
DO45145
0 years, male, NA, stage:3, dead, 60 days
45.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
29.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
29.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
26.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
24.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
19.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
19.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
17.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.2
DO45155
0 years, male, NA, stage:2, alive, 2160 days
15.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
15.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
15.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
14.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
13.8
DO45105
0 years, male, NA, stage:1, alive, 1680 days
13.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
13.3
DO45305
0 years, male, NA, stage:4, alive, 300 days
13.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
12.8
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
12.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
12.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
11.7
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
11.5
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.4
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
11.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
10.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
10.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
10.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
10.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
10.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
9.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
9.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
9.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
9.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
9.3
DO45301
0 years, male, NA, stage:2, dead, 1440 days
9.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
9.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
9.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
9.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
8.8
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
8.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
8.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
8.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
8.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.6
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
8.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
8.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.0
DO23537
0 years, male, NA, stage:2, dead, 900 days
8.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
8.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
7.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
7.8
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
7.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.5
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
7.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
7.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
7.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
7.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
7.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
6.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
6.8
DO45221
0 years, female, NA, stage:4, dead, 390 days
6.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
6.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
6.6
DO45165
0 years, male, NA, stage:2, alive, 690 days
6.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
6.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
6.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
6.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
6.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
5.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
5.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
5.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
5.8
DO45115
0 years, male, NA, stage:2, alive, 840 days
5.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.6
DO45269
0 years, male, NA, stage:3, alive, 750 days
5.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
5.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
5.3
DO45117
0 years, female, NA, stage:2, dead, 1110 days
5.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
5.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
5.2
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
5.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
5.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.1
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
5.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
5.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
5.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
5.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
4.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
4.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
4.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
4.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
4.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.7
DO45096
0 years, male, NA, stage:2, dead, 1290 days
4.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
4.6
DO50844
0 years, male, NA, stage:4, alive, 300 days
4.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
4.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
4.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
4.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
4.4
DO50776
0 years, male, NA, stage:1, alive, 690 days
4.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
4.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
4.3
DO45283
0 years, male, NA, stage:3, alive, 510 days
4.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
4.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
4.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
4.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
4.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
4.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
3.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
3.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
3.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
3.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
3.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
3.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
3.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
3.8
DO45097
0 years, male, NA, stage:3, alive, 1620 days
3.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
3.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
3.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
3.4
DO50832
0 years, male, NA, stage:3, alive, 90 days
3.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
3.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
3.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
3.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
3.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
3.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
3.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
3.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
2.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
2.9
DO50825
0 years, male, NA, stage:2, alive, 390 days
2.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.8
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
2.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
2.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
2.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
2.6
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.6
DO45189
0 years, female, NA, stage:2, alive, 1200 days
2.5
DO45163
0 years, male, NA, stage:2, alive, 960 days
2.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
2.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
2.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
2.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
2.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
2.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
2.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
2.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
2.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
2.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
1.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
1.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
1.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
1.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
1.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
983
Tumor
1.8
285
Tumor
1.7
851
Tumor
1.6
815
Tumor
1.5
937
Tumor
1.5
463
Tumor
1.4
535
Tumor
1.4
921
Tumor
1.3
743
Tumor
1.3
425
Tumor
1.2
957
Tumor
1.2
283
Tumor
1.2
617
Tumor
1.1
131
Tumor
1.1
917
Tumor
1.1
545
Tumor
1.0
727
Tumor
1.0
125
Tumor
0.9
477
Tumor
0.9
1015
Tumor
0.9
497
Tumor
0.9
311
Tumor
0.9
395
Tumor
0.9
343
Tumor
0.9
277
Tumor
0.9
1013
Tumor
0.8
367
Tumor
0.8
877
Tumor
0.8
227
Tumor
0.8
695
Tumor
0.8
517
Tumor
0.8
363
Tumor
0.7
817
Tumor
0.7
421
Tumor
0.7
435
Tumor
0.7
923
Tumor
0.7
195
Tumor
0.7
525
Tumor
0.7
493
Tumor
0.7
487
Tumor
0.6
557
Tumor
0.6
383
Tumor
0.6
925
Tumor
0.6
1045
Tumor
0.6
413
Tumor
0.6
221
Tumor
0.6
661
Tumor
0.6
537
Tumor
0.6
391
Tumor
0.6
387
Tumor
0.6
351
Tumor
0.6
967
Tumor
0.6
447
Tumor
0.5
671
Tumor
0.5
814
Normal
0.5
713
Tumor
0.5
355
Tumor
0.5
724
Normal
0.5
647
Tumor
0.5
943
Tumor
0.5
813
Tumor
0.4
465
Tumor
0.4
715
Tumor
0.4
567
Tumor
0.4
524
Normal
0.4
483
Tumor
0.4
951
Tumor
0.4
536
Normal
0.4
873
Tumor
0.4
965
Tumor
0.4
977
Tumor
0.4
127
Tumor
0.4
297
Tumor
0.4
147
Tumor
0.4
523
Tumor
0.4
571
Tumor
0.3
461
Tumor
0.3
1043
Tumor
0.3
257
Tumor
0.3
755
Tumor
0.3
865
Tumor
0.3
223
Tumor
0.3
171
Tumor
0.3
491
Tumor
0.3
217
Tumor
0.3
857
Tumor
0.3
478
Normal
0.3
185
Tumor
0.2
313
Tumor
0.2
528
Normal
0.2
573
Tumor
0.2
393
Tumor
0.2
455
Tumor
0.2
492
Normal
0.2
1028
Normal
0.2
113
Tumor
0.2
963
Tumor
0.2
211
Tumor
0.2
916
Normal
0.2
697
Tumor
0.2
415
Tumor
0.2
953
Tumor
0.2
123
Tumor
0.2
737
Tumor
0.2
498
Normal
0.2
213
Tumor
0.2
883
Tumor
0.2
563
Tumor
0.1
331
Tumor
0.1
451
Tumor
0.1
1021
Tumor
0.1
881
Tumor
0.1
284
Normal
0.1
141
Tumor
0.1
538
Normal
0.1
665
Tumor
0.1
124
Normal
0.1
385
Tumor
0.0
515
Tumor
0.0
145
Tumor
0.0
212
Normal
0.0
975
Tumor
0.0
224
Normal
0.0
341
Tumor
0.0
344
Normal
0.0
471
Tumor
0.0
553
Tumor
0.0
918
Normal
0.0
922
Normal
0.0
984
Normal
0.0
375
Tumor
0.0
357
Tumor
0.0
443
Tumor
0.0
778
Normal
0.0
721
Tumor
-0.1
433
Tumor
-0.1
978
Normal
-0.1
228
Normal
-0.1
191
Tumor
-0.1
926
Normal
-0.1
516
Normal
-0.1
427
Tumor
-0.1
444
Normal
-0.1
494
Normal
-0.1
861
Tumor
-0.1
412
Normal
-0.1
913
Tumor
-0.1
696
Normal
-0.1
473
Tumor
-0.1
722
Normal
-0.1
686
Normal
-0.1
446
Normal
-0.1
488
Normal
-0.1
785
Tumor
-0.1
161
Tumor
-0.1
558
Normal
-0.1
135
Tumor
-0.1
445
Tumor
-0.1
874
Normal
-0.2
467
Tumor
-0.2
514
Normal
-0.2
952
Normal
-0.2
966
Normal
-0.2
434
Normal
-0.2
1031
Tumor
-0.2
262
Normal
-0.2
1025
Tumor
-0.2
823
Tumor
-0.2
368
Normal
-0.2
431
Tumor
-0.2
1044
Normal
-0.2
112
Tumor
-0.2
187
Tumor
-0.2
958
Normal
-0.2
672
Normal
-0.2
641
Tumor
-0.2
863
Tumor
-0.2
526
Normal
-0.2
636
Normal
-0.2
662
Normal
-0.2
527
Tumor
-0.2
954
Normal
-0.2
968
Normal
-0.2
716
Normal
-0.2
944
Normal
-0.2
286
Normal
-0.2
572
Normal
-0.3
411
Tumor
-0.3
852
Normal
-0.3
352
Normal
-0.3
267
Tumor
-0.3
554
Normal
-0.3
231
Tumor
-0.3
358
Normal
-0.3
1014
Normal
-0.3
956
Normal
-0.3
364
Normal
-0.3
312
Normal
-0.3
138
Normal
-0.3
142
Normal
-0.3
356
Normal
-0.3
468
Normal
-0.3
218
Normal
-0.3
738
Normal
-0.3
414
Normal
-0.3
744
Normal
-0.3
261
Tumor
-0.3
866
Normal
-0.3
955
Tumor
-0.3
422
Normal
-0.4
976
Normal
-0.4
416
Normal
-0.4
423
Tumor
-0.4
915
Tumor
-0.4
745
Tumor
-0.4
137
Tumor
-0.4
342
Normal
-0.4
394
Normal
-0.4
384
Normal
-0.4
635
Tumor
-0.4
867
Tumor
-0.4
268
Normal
-0.4
365
Tumor
-0.4
1016
Normal
-0.4
615
Tumor
-0.4
546
Normal
-0.4
361
Tumor
-0.4
466
Normal
-0.4
392
Normal
-0.4
1046
Normal
-0.4
192
Normal
-0.4
982
Normal
-0.4
1032
Normal
-0.4
424
Normal
-0.4
354
Normal
-0.4
327
Tumor
-0.4
533
Tumor
-0.4
484
Normal
-0.4
723
Tumor
-0.4
868
Normal
-0.4
448
Normal
-0.4
964
Normal
-0.4
618
Normal
-0.4
136
Normal
-0.4
938
Normal
-0.5
666
Normal
-0.5
714
Normal
-0.5
462
Normal
-0.5
756
Normal
-0.5
981
Tumor
-0.5
376
Normal
-0.5
816
Normal
-0.5
728
Normal
-0.5
353
Tumor
-0.5
698
Normal
-0.5
188
Normal
-0.5
172
Normal
-0.5
126
Normal
-0.5
426
Normal
-0.5
663
Tumor
-0.5
884
Normal
-0.5
878
Normal
-0.5
258
Normal
-0.5
148
Normal
-0.5
472
Normal
-0.5
518
Normal
-0.5
328
Normal
-0.5
298
Normal
-0.5
362
Normal
-0.5
232
Normal
-0.5
386
Normal
-0.5
474
Normal
-0.5
271
Tumor
-0.5
685
Tumor
-0.5
272
Normal
-0.6
186
Normal
-0.6
396
Normal
-0.6
452
Normal
-0.6
456
Normal
-0.6
818
Normal
-0.6
428
Normal
-0.6
786
Normal
-0.6
574
Normal
-0.6
146
Normal
-0.6
534
Normal
-0.6
432
Normal
-0.6
111
Normal
-0.6
564
Normal
-0.6
864
Normal
-0.6
132
Normal
-0.6
128
Normal
-0.6
388
Normal
-0.6
642
Normal
-0.6
914
Normal
-0.6
464
Normal
-0.6
278
Normal
-0.6
824
Normal
-0.6
568
Normal
-0.6
627
Tumor
-0.6
862
Normal
-0.7
314
Normal
-0.7
742
Normal
-0.7
366
Normal
-0.7
214
Normal
-0.7
628
Normal
-0.7
616
Normal
-0.7
924
Normal
-0.7
332
Normal
-0.7
1026
Normal
-0.7
222
Normal
-0.7
858
Normal
-0.7
513
Tumor
-0.7
481
Tumor
-0.7
912
Normal
-0.7
1042
Normal
-0.7
196
Normal
-0.7
114
Normal
-0.7
482
Normal
-0.7
648
Normal
-0.7
162
Normal
-0.8
436
Normal
-0.8
664
Normal
-0.8
882
Normal
-0.8
746
Normal
-0.8
741
Tumor
-0.8
1022
Normal
-0.8
1041
Tumor
-0.9
777
Tumor
-0.9
1027
Tumor
-0.9
911
Tumor
-1.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
