MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:427.2 nTPM
HPA Brain:366.2 nTPM
GTEx:427.2 nTPM
FANTOM5:386.7 Scaled Tags Per Million
Pig:168.9 nTPM
Mouse:12.9 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 366.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 270.7
2411 Female, age 72, unknown 318.3
1870 Female, age 42, unknown 314.8
2586 Male, age 75, left hemisphere 305.7
2019 Male, age 18, unknown 294.3
1830 Male, age 51, unknown 293.9
1833 Male, age 53, unknown 292.5
2828 Female, age 72, unknown 260.0
2219 Male, age 76, both hemispheres 236.7
1827 Male, age 72, unknown 217.9
2666 Male, age 74, left hemisphere 172.8
Dorsal raphe nucleus
nTPM: 282.0
2750 Male, age 76, both hemispheres 376.2
1828 Male, age 53, unknown 293.6
2047 Male, age 72, unknown 289.3
2016 Female, age 72, unknown 253.8
2298 Female, age 72, unknown 197.1
Inferior colliculus
nTPM: 272.0
1848 Female, age 42, unknown 311.2
1890 Male, age 53, unknown 283.4
2849 Male, age 72, unknown 247.4
2097 Female, age 72, unknown 245.9
Median raphe nucleus
nTPM: 202.4
2220 Male, age 76, midline 202.4
Periaquaductal grey, anterior
nTPM: 222.0
2502 Female, age 75, unknown 256.0
1947 Male, age 18, unknown 221.1
1795 Male, age 51, unknown 189.0
Periaquaductal grey, dorsal
nTPM: 202.0
2464 Female, age 72, unknown 256.1
1840 Male, age 53, unknown 207.5
2850 Male, age 76, both hemispheres 183.3
1831 Male, age 72, unknown 161.1
Periaquaductal grey, lateral
nTPM: 203.7
2053 Male, age 18, unknown 229.6
2272 Male, age 74, both hemispheres 192.0
2140 Male, age 76, both hemispheres 189.4
Pretectal area
nTPM: 237.8
1817 Female, age 42, unknown 314.6
2316 Male, age 76, right hemisphere 287.0
2667 Female, age 75, unknown 272.9
1815 Male, age 53, unknown 263.6
2007 Male, age 72, unknown 231.2
2224 Female, age 72, unknown 223.1
2825 Male, age 18, unknown 216.5
1944 Female, age 72, unknown 214.1
1816 Male, age 51, unknown 212.9
2273 Male, age 74, both hemispheres 204.9
2407 Male, age 75, both hemispheres 175.2
Red nucleus
nTPM: 366.2
1821 Female, age 72, unknown 444.1
1904 Male, age 53, unknown 436.4
1865 Male, age 51, unknown 433.3
1954 Female, age 42, unknown 422.9
2769 Male, age 72, unknown 421.9
2227 Male, age 72, unknown 421.8
2823 Male, age 76, right hemisphere 392.1
2503 Female, age 72, unknown 370.3
2588 Male, age 74, left hemisphere 332.5
2785 Male, age 18, unknown 297.5
2725 Female, age 75, unknown 231.0
2584 Male, age 75, left hemisphere 190.7
Substantia nigra
nTPM: 249.1
2699 Male, age 18, unknown 299.3
1851 Male, age 51, unknown 278.5
1889 Female, age 72, unknown 278.0
1916 Female, age 42, unknown 275.6
2241 Male, age 72, unknown 261.1
2409 Female, age 72, unknown 253.2
2590 Female, age 75, unknown 238.9
2583 Male, age 75, right hemisphere 231.6
1941 Male, age 53, unknown 188.2
2665 Male, age 74, both hemispheres 186.2
Superior colliculus
nTPM: 243.5
1895 Male, age 76, right hemisphere 336.1
2668 Female, age 75, unknown 281.2
1913 Female, age 42, unknown 266.2
1995 Male, age 72, unknown 256.0
1839 Male, age 51, unknown 246.0
2587 Male, age 74, left hemisphere 243.2
2087 Female, age 72, unknown 224.2
2261 Male, age 18, unknown 203.3
1796 Male, age 53, unknown 200.5
2664 Male, age 75, both hemispheres 178.3
Ventral tegmental area
nTPM: 258.1
2410 Female, age 72, unknown 321.1
2223 Female, age 72, unknown 316.3
1915 Female, age 42, unknown 252.0
2021 Male, age 53, unknown 225.8
2218 Male, age 76, both hemispheres 224.6
1942 Male, age 51, unknown 209.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 427.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 427.2
Samples: 139

Max nTPM: 1033.1
Min nTPM: 164.5
Std nTPM: 142.3
Median nTPM: 400.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1033.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 804.9
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 765.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 751.9
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 710.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 695.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 689.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 672.7
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 663.6
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 658.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 650.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 386.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 386.7
FF:10158-103A5 76 years, female 386.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 168.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 161.2
Samples: 4

Max nTPM: 182.4
Min nTPM: 135.9
Sample A Female 182.4
Sample B Female 135.9
Sample C Male 147.1
Sample D Male 179.3
Midbrain
nTPM: 154.2
Samples: 4

Max nTPM: 197.6
Min nTPM: 124.7
Sample A Female 197.6
Sample B Female 163.0
Sample C Male 131.3
Sample D Male 124.7
Periaqueductal gray
nTPM: 168.9
Samples: 3

Max nTPM: 182.5
Min nTPM: 144.5
Sample B Female 182.5
Sample C Male 179.7
Sample D Male 144.5
Superior colliculi
nTPM: 150.1
Samples: 4

Max nTPM: 175.7
Min nTPM: 137.7
Sample A Female 175.7
Sample B Female 142.9
Sample C Male 144.0
Sample D Male 137.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 12.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.9
Samples: 4

Max nTPM: 13.3
Min nTPM: 11.7
Sample A Male 11.7
Sample B Male 13.3
Sample C Female 13.3
Sample D Female 13.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
68321650 Antisense, RP_041130_02_H01, Mouse strain C57BL/6J (56 days, male) 1.4

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