We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMC3 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
108.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
459.8
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
341.7
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
301.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
280.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
253.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
218.9
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
205.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
204.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
198.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
198.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
195.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
194.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
190.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
182.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
171.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
170.3
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
169.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
169.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
168.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
166.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
166.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
165.8
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
161.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
161.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
160.4
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
159.5
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
159.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
157.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
155.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
154.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
154.2
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
153.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
152.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
152.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
151.4
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
151.3
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
151.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
150.9
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
150.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
150.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
150.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
148.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
147.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
146.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
146.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
145.6
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
144.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
144.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
144.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
143.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
142.6
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
141.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
141.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
141.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
140.7
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
140.6
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
140.5
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
139.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
139.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
139.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
138.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
135.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
134.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
134.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
133.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
132.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
131.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
130.4
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
130.0
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
129.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
129.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
128.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
128.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
128.5
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
128.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
128.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
127.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
127.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
127.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
126.9
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
126.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
126.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
126.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
126.2
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
125.9
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
125.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
125.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
125.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
124.9
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
124.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
124.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
123.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
123.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
123.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
122.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
122.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
122.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
121.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
121.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
121.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
121.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
120.9
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
120.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
120.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
120.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
120.2
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
120.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
119.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
119.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
119.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
119.5
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
119.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
119.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
119.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
118.7
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
118.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
118.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
117.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
117.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
117.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
116.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
116.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
115.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
115.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
115.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
115.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
115.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
115.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
114.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
114.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
114.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
114.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
114.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
113.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
113.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
113.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
113.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
113.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
113.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
112.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
112.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
112.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
112.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
111.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
111.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
111.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
111.2
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
110.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
110.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
110.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
110.1
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
109.9
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
109.9
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
109.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
109.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
109.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
109.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
109.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
108.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
108.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
108.6
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
108.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
108.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
108.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
107.6
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
107.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
107.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
107.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
106.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
106.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
106.3
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
106.3
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
106.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
105.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
105.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
105.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
105.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
105.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
105.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
104.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
104.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
104.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
104.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
103.8
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
103.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
103.5
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
103.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
102.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
102.5
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
102.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
102.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
102.1
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
102.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
101.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
101.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
101.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
100.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
100.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
100.4
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
100.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
99.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
99.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
99.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
98.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
98.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
97.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
97.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
96.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
96.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
96.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
95.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
95.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
95.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
95.1
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
94.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
94.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
94.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
94.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
94.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
94.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
93.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
93.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
93.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
93.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
92.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
92.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
92.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
91.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
91.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
91.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
90.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
90.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
90.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
90.3
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
90.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
90.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
89.7
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
89.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
89.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
89.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
89.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
89.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
89.1
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
88.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
88.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
88.5
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
88.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
88.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
88.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
87.9
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
87.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
87.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
87.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
87.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
86.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
86.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
86.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
86.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
86.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
86.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
86.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
85.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
85.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
85.3
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
85.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
85.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
84.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
84.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
84.7
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
84.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
84.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
84.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
83.9
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
83.4
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
83.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
83.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
83.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
82.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
82.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
82.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
81.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
81.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
81.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
81.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
80.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
79.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
79.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
79.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
78.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
78.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
78.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
77.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
77.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
77.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
76.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
76.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
76.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
76.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
76.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
75.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
75.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
75.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
74.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
74.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
74.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
74.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
74.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
73.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
72.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
72.6
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
72.5
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
71.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
71.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
71.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
71.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
71.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
70.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
70.6
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
70.5
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
70.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
69.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
69.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
69.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
68.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
68.7
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
68.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
67.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
67.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
66.9
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
66.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
66.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
66.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
66.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
66.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
66.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
65.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
65.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
64.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
64.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
64.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
63.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
63.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
63.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
62.6
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
61.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
61.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
61.0
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
60.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
60.2
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
59.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
59.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
58.6
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
58.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
57.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
55.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
55.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
55.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
54.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
53.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
52.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
37.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSMC3 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
73.8
Number of samples
231
Samples
Sample
Description
TPM
DO50839
0 years, female, NA, stage:3, alive, 330 days
338.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
185.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
163.8
DO48747
0 years, male, NA, stage:3, alive, 540 days
159.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
154.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
134.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
123.9
DO45185
0 years, male, NA, stage:2, alive, 600 days
123.2
DO50804
0 years, male, NA, stage:2, alive, 720 days
123.0
DO23519
0 years, male, NA, stage:3, alive, 630 days
120.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
119.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
119.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
118.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
116.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
116.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
113.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
111.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
111.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
110.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
110.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
107.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
106.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
105.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
103.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
102.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
102.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
102.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
102.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
101.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
99.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
98.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
97.5
DO45253
0 years, male, NA, stage:2, alive, 870 days
97.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
97.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
97.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
96.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
96.8
DO45275
0 years, male, NA, stage:3, dead, 10 days
96.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
96.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
96.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
95.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
94.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
93.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
92.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
92.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
92.5
DO45155
0 years, male, NA, stage:2, alive, 2160 days
92.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
91.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
91.5
DO50840
0 years, male, NA, stage:2, alive, 330 days
90.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
90.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
88.8
DO23540
0 years, male, NA, stage:1, alive, 750 days
88.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
87.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
87.6
DO48677
0 years, male, NA, stage:3, alive, 1140 days
87.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
86.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
86.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
86.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
85.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
84.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
84.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
84.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
84.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
84.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
84.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
83.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
83.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
83.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
83.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
82.9
DO48757
0 years, female, NA, stage:3, alive, 480 days
82.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
82.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
81.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
81.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
81.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
81.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
81.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
79.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
79.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
79.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
78.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
78.1
DO50785
0 years, male, NA, stage:4, dead, 90 days
77.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
77.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
77.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
77.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
77.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
76.8
DO23542
0 years, male, NA, stage:3, alive, 960 days
76.3
DO50832
0 years, male, NA, stage:3, alive, 90 days
76.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
76.1
DO50793
0 years, male, NA, stage:4, alive, 540 days
76.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
75.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
75.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
75.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
75.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
74.8
DO45143
0 years, male, NA, stage:3, alive, 1290 days
74.5
DO45261
0 years, male, NA, stage:3, alive, 990 days
73.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
73.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
73.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
73.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
73.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
73.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
73.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
72.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
72.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
71.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
71.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
71.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
71.1
DO45287
0 years, male, NA, stage:1, alive, 390 days
70.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
70.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
70.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
70.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
69.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
69.4
DO23512
0 years, male, NA, stage:1, alive, 1260 days
69.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
69.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
68.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
68.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
68.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
68.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
67.7
DO45249
0 years, male, NA, stage:1, alive, 630 days
67.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
67.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
67.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
66.4
DO48743
0 years, female, NA, stage:2, alive, 570 days
66.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
65.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
65.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
65.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
65.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
64.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
64.5
DO45133
0 years, male, NA, stage:3, dead, 660 days
64.4
DO48679
0 years, male, NA, stage:2, alive, 1200 days
64.3
DO50802
0 years, male, NA, stage:2, alive, 930 days
63.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
63.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
63.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
62.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
62.6
DO45285
0 years, male, NA, stage:3, alive, 480 days
62.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
62.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
62.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
61.9
DO45231
0 years, male, NA, stage:2, alive, 930 days
61.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
61.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
61.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
61.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
61.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
60.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
60.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
60.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
60.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
59.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
59.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
59.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
59.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
58.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
58.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
58.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
58.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
57.5
DO45197
0 years, male, NA, stage:2, alive, 1170 days
57.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
56.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
56.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
56.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
56.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
55.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
55.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
55.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
54.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
54.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
54.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
53.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
53.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
53.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
53.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
53.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
52.9
DO48728
0 years, female, NA, stage:2, alive, 150 days
52.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
52.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
52.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
51.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
51.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
51.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
51.0
DO23547
0 years, male, NA, stage:1, alive, 1020 days
50.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
50.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
50.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
49.7
DO50845
0 years, male, NA, stage:3, alive, 210 days
48.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
48.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
48.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
46.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
46.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
46.3
DO23538
0 years, male, NA, stage:2, alive, 450 days
45.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
45.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
45.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
45.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
44.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
43.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
43.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
43.4
DO45239
0 years, male, NA, stage:2, alive, 870 days
43.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
42.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
41.9
DO45091
0 years, male, NA, stage:2, dead, 1320 days
41.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
41.1
DO23544
0 years, male, NA, stage:2, alive, 960 days
40.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
39.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
39.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
38.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
38.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
38.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
38.5
DO45191
0 years, female, NA, stage:2, alive, 1200 days
38.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
37.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
37.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
37.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
36.7
DO23529
0 years, male, NA, stage:4, alive, 930 days
36.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
35.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
34.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
34.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
30.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
28.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
25.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1027
Tumor
0.5
777
Tumor
0.5
513
Tumor
0.4
755
Tumor
0.4
955
Tumor
0.3
533
Tumor
0.3
741
Tumor
0.3
865
Tumor
0.3
527
Tumor
0.2
1025
Tumor
0.2
327
Tumor
0.2
756
Normal
0.2
257
Tumor
0.2
723
Tumor
0.2
125
Tumor
0.2
1022
Normal
0.2
411
Tumor
0.2
313
Tumor
0.2
353
Tumor
0.2
514
Normal
0.2
944
Normal
0.2
724
Normal
0.2
728
Normal
0.2
221
Tumor
0.2
727
Tumor
0.2
745
Tumor
0.2
862
Normal
0.2
981
Tumor
0.2
953
Tumor
0.2
1021
Tumor
0.2
738
Normal
0.2
515
Tumor
0.2
714
Normal
0.2
746
Normal
0.2
395
Tumor
0.2
356
Normal
0.2
487
Tumor
0.2
328
Normal
0.2
713
Tumor
0.2
477
Tumor
0.2
864
Normal
0.2
414
Normal
0.2
363
Tumor
0.2
661
Tumor
0.1
938
Normal
0.1
616
Normal
0.1
1026
Normal
0.1
786
Normal
0.1
466
Normal
0.1
956
Normal
0.1
951
Tumor
0.1
925
Tumor
0.1
914
Normal
0.1
436
Normal
0.1
472
Normal
0.1
815
Tumor
0.1
462
Normal
0.1
742
Normal
0.1
1031
Tumor
0.1
482
Normal
0.1
863
Tumor
0.1
1015
Tumor
0.1
473
Tumor
0.1
448
Normal
0.1
314
Normal
0.1
534
Normal
0.1
432
Normal
0.1
113
Tumor
0.1
873
Tumor
0.1
428
Normal
0.1
455
Tumor
0.1
412
Normal
0.1
227
Tumor
0.1
128
Normal
0.1
924
Normal
0.1
416
Normal
0.1
147
Tumor
0.1
451
Tumor
0.1
868
Normal
0.1
743
Tumor
0.1
926
Normal
0.1
141
Tumor
0.1
443
Tumor
0.1
435
Tumor
0.1
528
Normal
0.1
964
Normal
0.1
558
Normal
0.1
557
Tumor
0.1
222
Normal
0.1
648
Normal
0.1
132
Normal
0.1
426
Normal
0.1
857
Tumor
0.1
685
Tumor
0.1
137
Tumor
0.1
952
Normal
0.1
824
Normal
0.1
1013
Tumor
0.1
114
Normal
0.1
978
Normal
0.1
546
Normal
0.1
617
Tumor
0.1
818
Normal
0.1
866
Normal
0.1
858
Normal
0.1
722
Normal
0.1
912
Normal
0.1
456
Normal
0.1
261
Tumor
0.1
696
Normal
0.1
1016
Normal
0.1
778
Normal
0.1
298
Normal
0.1
196
Normal
0.1
431
Tumor
0.1
518
Normal
0.1
272
Normal
0.1
526
Normal
0.1
877
Tumor
0.1
484
Normal
0.1
698
Normal
0.1
884
Normal
0.1
516
Normal
0.1
452
Normal
0.1
362
Normal
0.1
1044
Normal
0.1
663
Tumor
0.1
721
Tumor
0.1
262
Normal
0.0
212
Normal
0.0
474
Normal
0.0
424
Normal
0.0
351
Tumor
0.0
172
Normal
0.0
922
Normal
0.0
481
Tumor
0.0
278
Normal
0.0
368
Normal
0.0
958
Normal
0.0
223
Tumor
0.0
471
Tumor
0.0
162
Normal
0.0
525
Tumor
0.0
494
Normal
0.0
882
Normal
0.0
415
Tumor
0.0
112
Tumor
0.0
232
Normal
0.0
966
Normal
0.0
391
Tumor
0.0
145
Tumor
0.0
422
Normal
0.0
111
Normal
0.0
286
Normal
0.0
358
Normal
0.0
421
Tumor
0.0
123
Tumor
0.0
285
Tumor
0.0
445
Tumor
0.0
911
Tumor
0.0
564
Normal
0.0
311
Tumor
0.0
214
Normal
0.0
697
Tumor
0.0
364
Normal
0.0
517
Tumor
0.0
1043
Tumor
0.0
1014
Normal
0.0
423
Tumor
0.0
228
Normal
0.0
967
Tumor
0.0
1028
Normal
0.0
387
Tumor
0.0
488
Normal
0.0
148
Normal
0.0
665
Tumor
0.0
1032
Normal
0.0
982
Normal
0.0
968
Normal
0.0
874
Normal
0.0
142
Normal
0.0
573
Tumor
0.0
312
Normal
0.0
258
Normal
0.0
464
Normal
0.0
478
Normal
0.0
1042
Normal
0.0
851
Tumor
0.0
136
Normal
0.0
983
Tumor
0.0
361
Tumor
0.0
716
Normal
0.0
135
Tumor
0.0
413
Tumor
0.0
618
Normal
0.0
354
Normal
0.0
913
Tumor
0.0
126
Normal
0.0
267
Tumor
0.0
537
Tumor
0.0
376
Normal
0.0
1046
Normal
0.0
284
Normal
0.0
186
Normal
0.0
468
Normal
0.0
861
Tumor
0.0
666
Normal
0.0
357
Tumor
0.0
554
Normal
0.0
664
Normal
0.0
497
Tumor
0.0
366
Normal
0.0
131
Tumor
0.0
976
Normal
0.0
572
Normal
0.0
217
Tumor
0.0
493
Tumor
0.0
816
Normal
0.0
852
Normal
0.0
188
Normal
0.0
918
Normal
0.0
883
Tumor
0.0
813
Tumor
0.0
647
Tumor
0.0
195
Tumor
0.0
628
Normal
0.0
686
Normal
0.0
563
Tumor
0.0
695
Tumor
0.0
332
Normal
0.0
218
Normal
0.0
394
Normal
0.0
297
Tumor
0.0
446
Normal
0.0
567
Tumor
-0.1
185
Tumor
-0.1
662
Normal
-0.1
737
Tumor
-0.1
878
Normal
-0.1
671
Tumor
-0.1
461
Tumor
-0.1
867
Tumor
-0.1
467
Tumor
-0.1
916
Normal
-0.1
568
Normal
-0.1
963
Tumor
-0.1
465
Tumor
-0.1
954
Normal
-0.1
553
Tumor
-0.1
1045
Tumor
-0.1
943
Tumor
-0.1
1041
Tumor
-0.1
427
Tumor
-0.1
434
Normal
-0.1
957
Tumor
-0.1
937
Tumor
-0.1
138
Normal
-0.1
977
Tumor
-0.1
386
Normal
-0.1
642
Normal
-0.1
277
Tumor
-0.1
785
Tumor
-0.1
384
Normal
-0.1
187
Tumor
-0.1
627
Tumor
-0.1
342
Normal
-0.1
146
Normal
-0.1
388
Normal
-0.1
224
Normal
-0.1
523
Tumor
-0.1
268
Normal
-0.1
124
Normal
-0.1
271
Tumor
-0.1
352
Normal
-0.1
355
Tumor
-0.1
365
Tumor
-0.1
344
Normal
-0.1
984
Normal
-0.1
392
Normal
-0.1
425
Tumor
-0.1
538
Normal
-0.1
127
Tumor
-0.1
491
Tumor
-0.1
161
Tumor
-0.1
636
Normal
-0.1
817
Tumor
-0.1
965
Tumor
-0.1
192
Normal
-0.1
433
Tumor
-0.1
213
Tumor
-0.1
571
Tumor
-0.1
881
Tumor
-0.1
635
Tumor
-0.1
524
Normal
-0.2
396
Normal
-0.2
915
Tumor
-0.2
814
Normal
-0.2
463
Tumor
-0.2
341
Tumor
-0.2
343
Tumor
-0.2
211
Tumor
-0.2
715
Tumor
-0.2
823
Tumor
-0.2
498
Normal
-0.2
536
Normal
-0.2
615
Tumor
-0.2
383
Tumor
-0.2
444
Normal
-0.2
447
Tumor
-0.2
492
Normal
-0.2
975
Tumor
-0.2
191
Tumor
-0.2
535
Tumor
-0.2
917
Tumor
-0.2
923
Tumor
-0.2
385
Tumor
-0.2
231
Tumor
-0.2
283
Tumor
-0.2
375
Tumor
-0.2
641
Tumor
-0.2
744
Normal
-0.2
574
Normal
-0.2
393
Tumor
-0.2
367
Tumor
-0.2
545
Tumor
-0.2
672
Normal
-0.2
483
Tumor
-0.2
171
Tumor
-0.3
331
Tumor
-0.3
921
Tumor
-0.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.