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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ISCA2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
16.1
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
48.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
40.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
35.3
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
34.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
34.1
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
33.4
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
32.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
31.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
31.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
31.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
30.5
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
30.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
29.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
29.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
29.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
29.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
28.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
28.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
27.9
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
27.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
27.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
26.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
26.0
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
25.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
25.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
25.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
25.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
24.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
24.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
24.5
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
24.5
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
24.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
24.2
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
24.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
24.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
23.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
23.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
23.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
23.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
23.5
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
23.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
23.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
22.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
22.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
22.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
22.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
22.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
22.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
22.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
22.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
22.1
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
22.1
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
21.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
21.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
21.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
21.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
21.7
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
21.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
21.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
21.5
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
21.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
21.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
21.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
21.4
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
21.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
21.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
21.3
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
21.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
21.2
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
21.2
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
21.1
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
21.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
21.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
21.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
20.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
20.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
20.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
20.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
20.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
20.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
20.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
20.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
20.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
20.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
20.5
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
20.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
20.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
20.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
20.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
20.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
19.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
19.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
19.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
19.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
19.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
19.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
19.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
19.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
19.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
19.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
19.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
19.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
19.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
19.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
18.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
18.7
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
18.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
18.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
18.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
18.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
18.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
18.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
18.2
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
18.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
18.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
18.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
18.1
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
18.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
18.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
18.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
18.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
17.8
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
17.8
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
17.8
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
17.5
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
17.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
17.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
17.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
17.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
17.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
17.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
17.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
17.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
17.1
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
17.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
17.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
17.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
16.9
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
16.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
16.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
16.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
16.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
16.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
16.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
16.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
16.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
16.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
16.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
16.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
16.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
16.2
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
16.2
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
16.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
16.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
16.0
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
16.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
15.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
15.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
15.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
15.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
15.8
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
15.8
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
15.8
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
15.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
15.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
15.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
15.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
15.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
15.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
15.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
15.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
15.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
15.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
15.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
15.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
15.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
15.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
15.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
15.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
15.0
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
15.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
15.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
14.9
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
14.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
14.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
14.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
14.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
14.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
14.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
14.5
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
14.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
14.4
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
14.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
14.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
14.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
14.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
14.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
14.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
14.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
14.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
14.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
14.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
13.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
13.9
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
13.9
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
13.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
13.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
13.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.8
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
13.8
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
13.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
13.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
13.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
13.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
13.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
13.6
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
13.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
13.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
13.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
13.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
13.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
13.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
13.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
13.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
13.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
13.1
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
13.1
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
13.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.0
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
13.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.8
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
12.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.7
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
12.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
12.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
12.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
12.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
12.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
12.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
12.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
12.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
12.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
12.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
12.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
12.1
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
12.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
12.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
11.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.9
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
11.9
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
11.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
11.8
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
11.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
11.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
11.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
11.7
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.6
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
11.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
11.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
11.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
11.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
11.5
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
11.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
11.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
11.2
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
11.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
11.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
11.1
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
10.9
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
10.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
10.9
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
10.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
10.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
10.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
10.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
10.6
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
10.5
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
10.5
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
10.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
10.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
10.1
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
10.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
10.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
9.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.9
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
9.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
9.7
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
9.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
9.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
9.6
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
9.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
9.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
9.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
9.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
9.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
9.2
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
9.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
9.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.1
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
9.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
8.8
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
8.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
8.7
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
8.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.6
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
8.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
8.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
8.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
8.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
8.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.0
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
7.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
7.3
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
7.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
7.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
7.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
6.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
5.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
5.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
5.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
5.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ISCA2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.5
Number of samples
231
Samples
Sample
Description
TPM
DO45289
0 years, female, NA, stage:3, alive, 360 days
34.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
30.4
DO23525
0 years, male, NA, stage:4, alive, 1050 days
28.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
27.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
26.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
25.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
25.4
DO45259
0 years, male, NA, stage:3, alive, 330 days
24.2
DO23508
0 years, female, NA, stage:2, alive, 390 days
24.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
23.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
22.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
21.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
20.7
DO45097
0 years, male, NA, stage:3, alive, 1620 days
20.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
20.3
DO50783
0 years, male, NA, stage:3, alive, 480 days
20.2
DO45217
0 years, female, NA, stage:3, dead, 270 days
19.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
19.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
19.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
19.5
DO48751
0 years, male, NA, stage:2, dead, 480 days
19.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
19.5
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
18.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
18.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
17.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
17.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
16.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
16.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
16.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
16.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
16.4
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
16.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
16.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
16.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
15.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
15.9
DO50802
0 years, male, NA, stage:2, alive, 930 days
15.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
15.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
15.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.6
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
15.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
15.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
15.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
15.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
15.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
14.9
DO45175
0 years, male, NA, stage:2, alive, 1140 days
14.9
DO48712
0 years, male, NA, stage:2, alive, 810 days
14.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.9
DO45305
0 years, male, NA, stage:4, alive, 300 days
14.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
14.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
14.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
14.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
14.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
14.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
14.2
DO23533
0 years, male, NA, stage:2, alive, 900 days
14.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
14.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
14.2
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
14.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
13.9
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
13.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
13.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
13.6
DO45303
0 years, female, NA, stage:3, alive, 990 days
13.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
13.6
DO45223
0 years, male, NA, stage:4, alive, 1020 days
13.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
13.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
13.4
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
13.2
DO45165
0 years, male, NA, stage:2, alive, 690 days
13.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.9
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
12.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
12.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
12.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
12.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
12.5
DO23514
0 years, male, NA, stage:2, alive, 1290 days
12.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
12.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
12.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.2
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.2
DO45103
0 years, male, NA, stage:3, alive, 450 days
12.1
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
12.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
12.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
12.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
12.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
11.9
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
11.8
DO45127
0 years, male, NA, stage:3, dead, 420 days
11.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
11.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
11.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
11.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
11.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.4
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
11.4
DO23550
0 years, male, NA, stage:1, alive, 990 days
11.3
DO45145
0 years, male, NA, stage:3, dead, 60 days
11.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
11.2
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
11.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
10.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
10.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
10.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.7
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
10.6
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
10.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
10.0
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
9.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.8
DO50807
0 years, male, NA, stage:1, alive, 540 days
9.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
9.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
9.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
9.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.6
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
9.5
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
9.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
9.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
9.2
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
9.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
9.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
9.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
8.8
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.7
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
8.7
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
8.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
8.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
8.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
8.3
DO23511
0 years, female, NA, stage:3, dead, 180 days
8.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
8.2
DO23527
0 years, male, NA, stage:1, alive, 1050 days
8.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
8.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
8.1
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
7.8
DO48674
0 years, male, NA, stage:2, alive, 1260 days
7.7
DO45219
0 years, male, NA, stage:2, alive, 1080 days
7.6
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
7.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.4
DO227643
0 years, male, NA, stage:2, alive, 1260 days
7.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
7.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
7.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.3
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
6.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.9
DO45167
0 years, male, NA, stage:2, dead, 1440 days
6.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
6.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
6.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
6.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
6.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
5.8
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.3
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
5.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
4.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
4.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.6
DO45125
0 years, male, NA, stage:3, alive, 1680 days
3.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
1043
Tumor
1.4
473
Tumor
1.2
863
Tumor
1.2
911
Tumor
1.1
267
Tumor
1.1
695
Tumor
1.1
741
Tumor
1.1
635
Tumor
1.1
967
Tumor
1.1
745
Tumor
1.0
285
Tumor
1.0
227
Tumor
1.0
1041
Tumor
1.0
523
Tumor
0.8
755
Tumor
0.8
463
Tumor
0.8
975
Tumor
0.8
867
Tumor
0.7
641
Tumor
0.7
715
Tumor
0.7
685
Tumor
0.7
445
Tumor
0.7
1015
Tumor
0.7
435
Tumor
0.6
553
Tumor
0.6
221
Tumor
0.6
727
Tumor
0.6
488
Normal
0.6
1045
Tumor
0.6
697
Tumor
0.6
361
Tumor
0.6
861
Tumor
0.6
571
Tumor
0.6
963
Tumor
0.6
393
Tumor
0.5
627
Tumor
0.5
112
Tumor
0.5
954
Normal
0.5
981
Tumor
0.5
363
Tumor
0.5
1027
Tumor
0.5
357
Tumor
0.5
471
Tumor
0.5
411
Tumor
0.5
877
Tumor
0.5
527
Tumor
0.5
743
Tumor
0.5
873
Tumor
0.4
477
Tumor
0.4
135
Tumor
0.4
524
Normal
0.4
423
Tumor
0.4
145
Tumor
0.4
526
Normal
0.3
728
Normal
0.3
528
Normal
0.3
924
Normal
0.3
944
Normal
0.3
713
Tumor
0.3
497
Tumor
0.3
494
Normal
0.3
492
Normal
0.3
977
Tumor
0.3
554
Normal
0.3
714
Normal
0.3
557
Tumor
0.3
785
Tumor
0.3
392
Normal
0.3
513
Tumor
0.3
481
Tumor
0.2
868
Normal
0.2
925
Tumor
0.2
271
Tumor
0.2
131
Tumor
0.2
912
Normal
0.2
746
Normal
0.2
696
Normal
0.2
516
Normal
0.2
636
Normal
0.2
817
Tumor
0.2
865
Tumor
0.2
484
Normal
0.2
721
Tumor
0.2
616
Normal
0.2
472
Normal
0.2
224
Normal
0.2
723
Tumor
0.2
127
Tumor
0.2
926
Normal
0.2
1046
Normal
0.2
257
Tumor
0.2
953
Tumor
0.2
881
Tumor
0.2
141
Tumor
0.2
232
Normal
0.2
478
Normal
0.2
416
Normal
0.2
313
Tumor
0.2
952
Normal
0.2
815
Tumor
0.2
466
Normal
0.1
518
Normal
0.1
1042
Normal
0.1
517
Tumor
0.1
1032
Normal
0.1
617
Tumor
0.1
332
Normal
0.1
431
Tumor
0.1
922
Normal
0.1
686
Normal
0.1
515
Tumor
0.1
538
Normal
0.1
187
Tumor
0.1
342
Normal
0.1
433
Tumor
0.1
778
Normal
0.1
968
Normal
0.1
1014
Normal
0.1
482
Normal
0.1
818
Normal
0.1
364
Normal
0.1
534
Normal
0.1
722
Normal
0.1
344
Normal
0.1
642
Normal
0.1
328
Normal
0.1
386
Normal
0.1
862
Normal
0.1
387
Tumor
0.1
957
Tumor
0.1
1022
Normal
0.1
376
Normal
0.1
298
Normal
0.1
864
Normal
0.1
514
Normal
0.1
132
Normal
0.1
824
Normal
0.1
356
Normal
0.1
756
Normal
0.1
228
Normal
0.1
462
Normal
0.1
222
Normal
0.1
698
Normal
0.1
195
Tumor
0.1
572
Normal
0.1
436
Normal
0.1
365
Tumor
0.0
223
Tumor
0.0
744
Normal
0.0
777
Tumor
0.0
468
Normal
0.0
474
Normal
0.0
498
Normal
0.0
938
Normal
0.0
142
Normal
0.0
615
Tumor
0.0
913
Tumor
0.0
284
Normal
0.0
394
Normal
0.0
412
Normal
0.0
558
Normal
0.0
852
Normal
0.0
918
Normal
0.0
866
Normal
0.0
1044
Normal
0.0
965
Tumor
0.0
136
Normal
0.0
921
Tumor
0.0
984
Normal
0.0
665
Tumor
0.0
388
Normal
0.0
218
Normal
0.0
128
Normal
0.0
261
Tumor
0.0
916
Normal
0.0
464
Normal
0.0
396
Normal
0.0
738
Normal
0.0
212
Normal
0.0
493
Tumor
0.0
786
Normal
0.0
125
Tumor
0.0
262
Normal
0.0
196
Normal
0.0
138
Normal
0.0
716
Normal
0.0
314
Normal
0.0
1028
Normal
0.0
955
Tumor
0.0
964
Normal
0.0
352
Normal
0.0
628
Normal
0.0
672
Normal
0.0
277
Tumor
0.0
354
Normal
0.0
1026
Normal
0.0
444
Normal
0.0
455
Tumor
0.0
664
Normal
-0.1
456
Normal
-0.1
312
Normal
-0.1
857
Tumor
-0.1
958
Normal
-0.1
148
Normal
-0.1
137
Tumor
-0.1
446
Normal
-0.1
214
Normal
-0.1
172
Normal
-0.1
536
Normal
-0.1
1025
Tumor
-0.1
384
Normal
-0.1
422
Normal
-0.1
286
Normal
-0.1
618
Normal
-0.1
124
Normal
-0.1
671
Tumor
-0.1
278
Normal
-0.1
491
Tumor
-0.1
737
Tumor
-0.1
443
Tumor
-0.1
742
Normal
-0.1
432
Normal
-0.1
546
Normal
-0.1
915
Tumor
-0.1
647
Tumor
-0.1
535
Tumor
-0.1
874
Normal
-0.1
217
Tumor
-0.1
162
Normal
-0.1
272
Normal
-0.1
355
Tumor
-0.1
943
Tumor
-0.1
358
Normal
-0.1
297
Tumor
-0.1
882
Normal
-0.1
231
Tumor
-0.1
982
Normal
-0.1
268
Normal
-0.1
186
Normal
-0.1
914
Normal
-0.1
666
Normal
-0.1
816
Normal
-0.1
448
Normal
-0.1
366
Normal
-0.1
126
Normal
-0.1
813
Tumor
-0.2
923
Tumor
-0.2
192
Normal
-0.2
568
Normal
-0.2
414
Normal
-0.2
564
Normal
-0.2
185
Tumor
-0.2
452
Normal
-0.2
426
Normal
-0.2
878
Normal
-0.2
465
Tumor
-0.2
434
Normal
-0.2
648
Normal
-0.2
574
Normal
-0.2
415
Tumor
-0.2
917
Tumor
-0.2
343
Tumor
-0.2
858
Normal
-0.2
662
Normal
-0.2
353
Tumor
-0.2
114
Normal
-0.2
391
Tumor
-0.2
1016
Normal
-0.2
147
Tumor
-0.2
976
Normal
-0.2
424
Normal
-0.2
883
Tumor
-0.2
1031
Tumor
-0.2
447
Tumor
-0.2
385
Tumor
-0.3
428
Normal
-0.3
966
Normal
-0.3
663
Tumor
-0.3
413
Tumor
-0.3
258
Normal
-0.3
191
Tumor
-0.3
111
Normal
-0.3
978
Normal
-0.3
188
Normal
-0.3
146
Normal
-0.3
368
Normal
-0.3
563
Tumor
-0.3
362
Normal
-0.3
461
Tumor
-0.3
814
Normal
-0.3
823
Tumor
-0.3
956
Normal
-0.4
884
Normal
-0.4
467
Tumor
-0.4
851
Tumor
-0.4
937
Tumor
-0.4
1021
Tumor
-0.4
383
Tumor
-0.4
487
Tumor
-0.4
451
Tumor
-0.5
724
Normal
-0.5
421
Tumor
-0.5
331
Tumor
-0.5
537
Tumor
-0.5
213
Tumor
-0.5
483
Tumor
-0.5
311
Tumor
-0.6
661
Tumor
-0.6
567
Tumor
-0.6
171
Tumor
-0.6
351
Tumor
-0.6
113
Tumor
-0.6
211
Tumor
-0.7
283
Tumor
-0.7
341
Tumor
-0.7
983
Tumor
-0.7
327
Tumor
-0.7
375
Tumor
-0.7
123
Tumor
-0.8
427
Tumor
-0.8
1013
Tumor
-0.8
545
Tumor
-0.8
533
Tumor
-0.8
573
Tumor
-0.8
161
Tumor
-0.8
525
Tumor
-0.9
367
Tumor
-0.9
395
Tumor
-1.1
951
Tumor
-1.1
425
Tumor
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
