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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBTD1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
52.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
33.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
33.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
26.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
23.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
22.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
20.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
20.2
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
19.6
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
18.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
18.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
18.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
17.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
17.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
16.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
15.9
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
15.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
15.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
15.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
15.5
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
15.5
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
15.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
15.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
14.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
14.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
14.6
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
14.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
14.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
14.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
14.0
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.9
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
13.8
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
13.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
13.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
13.5
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
13.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
13.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
13.0
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
12.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
12.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
12.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
12.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
12.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
12.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
12.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
11.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
11.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
11.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
11.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
11.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
11.6
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.6
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
11.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
11.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
11.5
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
11.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
11.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
11.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
11.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
11.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
10.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
10.8
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
10.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
10.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
10.6
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
10.6
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
10.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
10.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
10.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
10.4
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
10.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
10.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
10.3
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
10.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
10.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
10.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
10.2
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
10.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
10.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
9.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
9.9
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
9.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
9.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
9.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.7
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
9.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
9.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
9.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
9.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.6
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.5
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.5
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
9.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
9.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.4
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
9.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
9.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
9.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
9.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
9.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
8.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
8.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
8.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
8.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
8.9
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
8.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
8.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
8.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
8.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
8.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
8.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
8.6
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.6
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
8.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
8.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
8.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
8.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
8.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
8.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
8.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
8.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
8.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
8.3
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
8.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
8.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
8.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
8.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
8.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
8.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
8.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
8.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
8.0
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
8.0
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
7.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
7.9
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
7.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
7.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
7.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
7.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
7.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
7.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
7.6
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
7.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
7.5
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
7.5
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
7.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
7.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
7.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
7.4
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
7.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.4
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
7.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
7.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.2
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
7.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
7.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.1
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
7.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
7.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
7.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
7.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.0
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
7.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
7.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
6.8
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
6.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
6.7
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
6.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
6.5
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
6.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
6.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
6.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
6.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.5
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
6.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
6.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
6.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
6.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
6.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
6.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
6.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
6.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
6.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
6.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
6.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
6.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
6.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
6.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
6.0
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
6.0
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
6.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
6.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
5.9
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
5.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.9
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
5.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
5.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
5.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
5.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
5.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
5.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
5.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.6
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
5.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.6
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
5.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.4
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.4
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
5.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
5.4
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
5.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
5.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
5.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
5.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
5.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
5.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.0
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
5.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.9
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
4.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
4.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
4.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.8
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
4.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
4.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
4.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
4.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
4.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
4.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.5
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.4
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
4.4
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
4.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
4.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
4.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
4.3
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
4.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
4.3
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
4.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
4.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
3.9
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.9
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
3.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.9
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
3.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
3.8
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
3.8
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
3.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
3.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
3.5
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.5
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.1
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
2.8
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
2.7
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
2.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
2.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
UBTD1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
5.9
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
27.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
26.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
22.4
DO45307
0 years, female, NA, stage:4, dead, 240 days
19.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
18.7
DO45131
0 years, male, NA, stage:4, dead, 360 days
18.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
17.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
16.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
12.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
12.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
12.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
11.8
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
11.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
11.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
11.0
DO45103
0 years, male, NA, stage:3, alive, 450 days
10.8
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.8
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
10.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
10.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
10.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
9.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
9.7
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.6
DO45121
0 years, male, NA, stage:3, alive, 1530 days
9.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
9.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
9.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
9.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
9.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.9
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
8.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
8.7
DO50806
0 years, male, NA, stage:4, alive, 540 days
8.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
8.2
DO23514
0 years, male, NA, stage:2, alive, 1290 days
8.0
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
7.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.8
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.6
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
7.3
DO48701
0 years, male, NA, stage:2, alive, 780 days
7.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
7.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.2
DO45277
0 years, male, NA, stage:3, alive, 600 days
7.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
7.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
7.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.1
DO45139
0 years, male, NA, stage:3, alive, 1320 days
7.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
7.0
DO48716
0 years, male, NA, stage:2, alive, 720 days
6.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
6.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
6.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
6.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
6.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
6.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
6.5
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
6.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
6.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
6.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
6.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
6.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
6.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
6.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
6.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
6.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
6.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
6.0
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
6.0
DO23510
0 years, female, NA, stage:2, alive, 870 days
5.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
5.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
5.8
DO45267
0 years, male, NA, stage:3, dead, 570 days
5.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.8
DO45113
0 years, male, NA, stage:3, alive, 1560 days
5.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.7
DO23525
0 years, male, NA, stage:4, alive, 1050 days
5.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
5.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
5.7
DO48682
0 years, female, NA, stage:3, dead, 120 days
5.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
5.6
DO45273
0 years, male, NA, stage:2, alive, 480 days
5.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
5.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
5.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
5.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
5.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
5.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
5.3
DO48725
0 years, male, NA, stage:1, alive, 780 days
5.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
5.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
5.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
5.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
5.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
5.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
5.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
5.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
4.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.9
DO45143
0 years, male, NA, stage:3, alive, 1290 days
4.9
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
4.8
DO23534
0 years, male, NA, stage:2, alive, 840 days
4.8
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
4.8
DO45125
0 years, male, NA, stage:3, alive, 1680 days
4.7
DO45159
0 years, male, NA, stage:3, alive, 1470 days
4.7
DO50822
0 years, male, NA, stage:2, alive, 510 days
4.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
4.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
4.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
4.7
DO45229
0 years, male, NA, stage:1, alive, 990 days
4.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
4.7
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
4.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
4.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.5
DO48712
0 years, male, NA, stage:2, alive, 810 days
4.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
4.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
4.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
4.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
4.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
4.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
4.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
4.3
DO45097
0 years, male, NA, stage:3, alive, 1620 days
4.3
DO45227
0 years, female, NA, stage:2, alive, 1020 days
4.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
4.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
4.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
4.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.1
DO50845
0 years, male, NA, stage:3, alive, 210 days
4.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
4.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
3.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
3.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
3.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
3.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
3.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
3.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
3.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
3.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
3.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
3.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
3.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
3.4
DO50774
0 years, female, NA, stage:2, alive, 720 days
3.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
3.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
3.3
DO45203
0 years, female, NA, stage:2, alive, 1170 days
3.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
3.3
DO23543
0 years, male, NA, stage:2, alive, 1020 days
3.3
DO23541
0 years, male, NA, stage:2, alive, 930 days
3.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
3.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
3.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
3.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
3.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
3.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
3.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
3.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
3.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
3.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
2.9
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
2.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
2.9
DO50804
0 years, male, NA, stage:2, alive, 720 days
2.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
2.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
2.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
2.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
2.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
2.8
DO23517
0 years, male, NA, stage:2, alive, 1200 days
2.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
2.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
2.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
2.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
2.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
2.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
2.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
2.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
2.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
2.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
2.4
DO23546
0 years, male, NA, stage:2, alive, 1050 days
2.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
2.3
DO48704
0 years, female, NA, stage:3, alive, 750 days
2.3
DO48742
0 years, male, NA, stage:2, alive, 600 days
2.3
DO45207
0 years, male, NA, stage:1, alive, 1050 days
2.1
DO45253
0 years, male, NA, stage:2, alive, 870 days
2.1
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
2.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
2.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
1.9
DO23538
0 years, male, NA, stage:2, alive, 450 days
1.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
1.9
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.8
DO23533
0 years, male, NA, stage:2, alive, 900 days
1.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
1.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
1.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
1.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
1.2
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
375
Tumor
1.4
467
Tumor
1.3
191
Tumor
1.3
195
Tumor
1.3
777
Tumor
0.9
533
Tumor
0.9
523
Tumor
0.8
187
Tumor
0.8
1025
Tumor
0.7
141
Tumor
0.7
146
Normal
0.7
132
Normal
0.6
937
Tumor
0.6
138
Normal
0.6
136
Normal
0.6
967
Tumor
0.6
131
Tumor
0.5
147
Tumor
0.5
737
Tumor
0.5
1045
Tumor
0.5
863
Tumor
0.4
113
Tumor
0.4
665
Tumor
0.4
671
Tumor
0.4
343
Tumor
0.4
385
Tumor
0.4
755
Tumor
0.4
698
Normal
0.4
864
Normal
0.4
285
Tumor
0.4
461
Tumor
0.3
145
Tumor
0.3
376
Normal
0.3
148
Normal
0.3
664
Normal
0.3
297
Tumor
0.3
517
Tumor
0.3
331
Tumor
0.3
487
Tumor
0.3
636
Normal
0.3
944
Normal
0.3
672
Normal
0.3
387
Tumor
0.3
468
Normal
0.3
981
Tumor
0.3
534
Normal
0.3
314
Normal
0.3
493
Tumor
0.3
391
Tumor
0.3
662
Normal
0.2
911
Tumor
0.2
363
Tumor
0.2
135
Tumor
0.2
341
Tumor
0.2
227
Tumor
0.2
1044
Normal
0.2
1046
Normal
0.2
312
Normal
0.2
921
Tumor
0.2
528
Normal
0.2
448
Normal
0.2
298
Normal
0.2
918
Normal
0.2
537
Tumor
0.2
192
Normal
0.2
361
Tumor
0.2
332
Normal
0.2
923
Tumor
0.2
617
Tumor
0.2
396
Normal
0.2
367
Tumor
0.2
1016
Normal
0.2
278
Normal
0.1
525
Tumor
0.1
388
Normal
0.1
926
Normal
0.1
727
Tumor
0.1
484
Normal
0.1
648
Normal
0.1
514
Normal
0.1
515
Tumor
0.1
824
Normal
0.1
447
Tumor
0.1
865
Tumor
0.1
412
Normal
0.1
877
Tumor
0.1
1028
Normal
0.1
868
Normal
0.1
647
Tumor
0.1
697
Tumor
0.1
394
Normal
0.1
123
Tumor
0.1
445
Tumor
0.1
277
Tumor
0.1
743
Tumor
0.1
393
Tumor
0.1
188
Normal
0.1
884
Normal
0.1
917
Tumor
0.1
428
Normal
0.1
366
Normal
0.1
356
Normal
0.1
513
Tumor
0.1
422
Normal
0.1
424
Normal
0.1
817
Tumor
0.1
666
Normal
0.1
1032
Normal
0.1
574
Normal
0.1
414
Normal
0.1
426
Normal
0.1
861
Tumor
0.1
546
Normal
0.1
526
Normal
0.1
328
Normal
0.1
386
Normal
0.1
286
Normal
0.1
444
Normal
0.1
1042
Normal
0.1
1026
Normal
0.1
416
Normal
0.1
715
Tumor
0.1
217
Tumor
0.1
432
Normal
0.1
415
Tumor
0.1
922
Normal
0.0
421
Tumor
0.0
462
Normal
0.0
443
Tumor
0.0
938
Normal
0.0
494
Normal
0.0
142
Normal
0.0
368
Normal
0.0
858
Normal
0.0
741
Tumor
0.0
785
Tumor
0.0
915
Tumor
0.0
1022
Normal
0.0
434
Normal
0.0
518
Normal
0.0
874
Normal
0.0
126
Normal
0.0
881
Tumor
0.0
982
Normal
0.0
1043
Tumor
0.0
535
Tumor
0.0
912
Normal
0.0
228
Normal
0.0
554
Normal
0.0
958
Normal
0.0
964
Normal
0.0
185
Tumor
0.0
413
Tumor
0.0
353
Tumor
0.0
728
Normal
0.0
862
Normal
0.0
446
Normal
0.0
161
Tumor
0.0
536
Normal
0.0
641
Tumor
0.0
313
Tumor
0.0
816
Normal
0.0
818
Normal
0.0
866
Normal
0.0
723
Tumor
0.0
365
Tumor
0.0
924
Normal
0.0
392
Normal
0.0
364
Normal
0.0
963
Tumor
0.0
954
Normal
0.0
362
Normal
0.0
1021
Tumor
0.0
483
Tumor
0.0
742
Normal
0.0
516
Normal
0.0
357
Tumor
0.0
916
Normal
0.0
1041
Tumor
0.0
492
Normal
0.0
527
Tumor
-0.1
696
Normal
-0.1
882
Normal
-0.1
957
Tumor
-0.1
524
Normal
-0.1
724
Normal
-0.1
965
Tumor
-0.1
852
Normal
-0.1
815
Tumor
-0.1
968
Normal
-0.1
1014
Normal
-0.1
778
Normal
-0.1
943
Tumor
-0.1
125
Tumor
-0.1
1031
Tumor
-0.1
663
Tumor
-0.1
171
Tumor
-0.1
951
Tumor
-0.1
563
Tumor
-0.1
213
Tumor
-0.1
425
Tumor
-0.1
956
Normal
-0.1
955
Tumor
-0.1
977
Tumor
-0.1
745
Tumor
-0.1
355
Tumor
-0.1
137
Tumor
-0.1
112
Tumor
-0.1
212
Normal
-0.1
384
Normal
-0.1
114
Normal
-0.1
186
Normal
-0.1
878
Normal
-0.1
984
Normal
-0.1
124
Normal
-0.1
111
Normal
-0.1
427
Tumor
-0.1
488
Normal
-0.1
744
Normal
-0.1
867
Tumor
-0.1
925
Tumor
-0.1
756
Normal
-0.1
283
Tumor
-0.1
311
Tumor
-0.2
695
Tumor
-0.2
538
Normal
-0.2
433
Tumor
-0.2
738
Normal
-0.2
545
Tumor
-0.2
498
Normal
-0.2
914
Normal
-0.2
557
Tumor
-0.2
873
Tumor
-0.2
383
Tumor
-0.2
851
Tumor
-0.2
952
Normal
-0.2
975
Tumor
-0.2
978
Normal
-0.2
553
Tumor
-0.2
713
Tumor
-0.2
615
Tumor
-0.2
714
Normal
-0.2
722
Normal
-0.2
661
Tumor
-0.2
983
Tumor
-0.2
976
Normal
-0.2
411
Tumor
-0.2
823
Tumor
-0.2
223
Tumor
-0.2
883
Tumor
-0.2
558
Normal
-0.2
481
Tumor
-0.2
395
Tumor
-0.2
423
Tumor
-0.2
567
Tumor
-0.2
953
Tumor
-0.2
716
Normal
-0.3
351
Tumor
-0.3
327
Tumor
-0.3
128
Normal
-0.3
627
Tumor
-0.3
497
Tumor
-0.3
966
Normal
-0.3
354
Normal
-0.3
857
Tumor
-0.3
218
Normal
-0.3
224
Normal
-0.3
1027
Tumor
-0.3
162
Normal
-0.3
284
Normal
-0.3
431
Tumor
-0.3
571
Tumor
-0.3
572
Normal
-0.3
344
Normal
-0.4
686
Normal
-0.4
221
Tumor
-0.4
491
Tumor
-0.4
451
Tumor
-0.4
127
Tumor
-0.4
642
Normal
-0.4
436
Normal
-0.4
172
Normal
-0.4
568
Normal
-0.4
618
Normal
-0.4
616
Normal
-0.4
358
Normal
-0.4
455
Tumor
-0.4
628
Normal
-0.4
786
Normal
-0.4
1015
Tumor
-0.4
721
Tumor
-0.4
564
Normal
-0.4
477
Tumor
-0.4
473
Tumor
-0.5
471
Tumor
-0.5
913
Tumor
-0.5
685
Tumor
-0.5
352
Normal
-0.5
196
Normal
-0.5
267
Tumor
-0.5
746
Normal
-0.5
472
Normal
-0.5
257
Tumor
-0.5
342
Normal
-0.5
814
Normal
-0.5
222
Normal
-0.5
268
Normal
-0.5
214
Normal
-0.5
1013
Tumor
-0.5
435
Tumor
-0.5
464
Normal
-0.5
261
Tumor
-0.5
482
Normal
-0.5
573
Tumor
-0.5
474
Normal
-0.6
466
Normal
-0.6
211
Tumor
-0.6
272
Normal
-0.6
452
Normal
-0.6
456
Normal
-0.6
465
Tumor
-0.7
478
Normal
-0.7
262
Normal
-0.7
231
Tumor
-0.7
258
Normal
-0.8
232
Normal
-0.8
271
Tumor
-0.8
813
Tumor
-0.9
463
Tumor
-0.9
635
Tumor
-0.9
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
