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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRAP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
926.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
5474.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4422.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
4061.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
3774.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3558.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
3461.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
3039.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2921.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
2859.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
2859.3
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
2675.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2650.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2639.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
2553.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2542.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2442.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2431.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2286.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
2262.9
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2249.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2238.2
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2233.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
2153.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
2146.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2143.5
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
2126.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
2120.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
2111.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
2098.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2042.3
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
2032.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
2008.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
1994.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1980.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
1941.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
1910.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1902.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1895.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1884.3
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
1882.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
1850.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1828.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1785.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
1764.5
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
1730.7
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1719.8
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
1715.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1702.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
1700.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
1699.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1686.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1671.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1667.9
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
1663.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
1652.1
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1638.8
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
1637.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
1634.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1630.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
1624.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1604.9
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1601.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1600.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1597.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1593.1
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
1571.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1550.9
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1547.3
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
1525.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1524.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
1502.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
1501.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1490.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
1476.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
1464.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1461.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1459.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1452.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
1451.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1450.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
1435.3
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
1424.3
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1423.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
1420.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
1412.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
1406.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1404.3
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
1395.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1386.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1379.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
1337.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1335.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
1330.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1327.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1317.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1312.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
1299.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1291.6
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1287.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1280.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1279.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
1279.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1269.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1264.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
1258.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1256.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1246.2
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
1240.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
1235.7
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
1226.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1197.8
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1178.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1174.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1161.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1152.4
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
1147.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
1134.9
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
1123.8
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1113.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
1111.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1107.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
1095.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1093.9
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
1078.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1078.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1076.9
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1064.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
1062.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1059.8
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1052.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
1050.4
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
1038.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1034.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1032.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
1031.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
1031.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
1023.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
1009.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1008.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1005.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
1005.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1004.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
990.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
982.9
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
982.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
976.1
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
971.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
966.1
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
960.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
953.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
946.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
944.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
939.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
935.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
931.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
919.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
915.2
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
905.2
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
890.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
885.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
883.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
880.0
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
874.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
872.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
872.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
869.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
862.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
861.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
857.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
853.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
834.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
833.9
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
819.7
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
819.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
808.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
802.3
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
798.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
781.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
779.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
779.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
778.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
761.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
755.7
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
747.8
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
743.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
740.3
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
731.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
726.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
726.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
724.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
723.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
721.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
706.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
701.5
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
699.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
698.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
695.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
688.8
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
681.4
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
674.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
671.3
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
660.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
659.4
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
636.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
635.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
634.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
633.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
627.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
614.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
600.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
597.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
595.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
592.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
588.2
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
585.6
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
584.4
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
583.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
551.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
540.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
538.2
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
537.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
537.4
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
534.2
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
529.6
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
523.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
520.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
509.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
503.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
499.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
497.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
497.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
490.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
489.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
487.2
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
482.3
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
480.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
479.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
471.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
464.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
463.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
461.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
458.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
454.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
448.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
440.9
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
438.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
435.0
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
419.5
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
412.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
403.2
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
398.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
396.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
393.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
385.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
384.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
381.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
379.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
371.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
358.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
358.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
357.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
350.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
349.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
348.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
345.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
342.2
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
341.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
341.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
340.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
333.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
333.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
331.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
331.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
328.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
326.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
315.9
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
308.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
306.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
297.7
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
288.8
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
286.3
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
279.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
273.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
263.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
255.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
253.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
252.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
251.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
247.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
246.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
242.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
232.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
229.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
229.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
222.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
218.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
196.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
176.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
168.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
167.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
161.5
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
161.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
161.3
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
161.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
158.9
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
156.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
149.3
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
147.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
147.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
143.8
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
140.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
139.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
138.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
134.6
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
131.5
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
127.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
124.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
122.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
122.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
121.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
119.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
119.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
119.2
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
110.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
106.5
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
104.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
102.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
102.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
98.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
96.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
93.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
91.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
88.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
85.1
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
64.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
56.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
54.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
51.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
50.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
47.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
46.6
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
46.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
44.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
39.0
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
39.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
37.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
35.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
27.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
23.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
11.9
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
7.1
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
5.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
3.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
2.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
2.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.3
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PRAP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
633.8
Number of samples
231
Samples
Sample
Description
TPM
DO50814
0 years, male, NA, stage:3, alive, 420 days
3824.8
DO50783
0 years, male, NA, stage:3, alive, 480 days
3742.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
2519.4
DO48723
0 years, male, NA, stage:1, alive, 600 days
2465.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
2418.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
2409.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
2264.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
2240.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
2141.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
2067.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
2030.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
2025.1
DO23511
0 years, female, NA, stage:3, dead, 180 days
1897.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
1800.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
1771.4
DO50825
0 years, male, NA, stage:2, alive, 390 days
1753.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
1712.5
DO45171
0 years, male, NA, stage:3, alive, 600 days
1689.7
DO50817
0 years, male, NA, stage:2, alive, 390 days
1515.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1469.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
1459.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
1457.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
1456.6
DO50818
0 years, male, NA, stage:2, alive, 510 days
1449.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
1415.3
DO45103
0 years, male, NA, stage:3, alive, 450 days
1348.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
1310.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
1298.8
DO50787
0 years, male, NA, stage:3, alive, 480 days
1259.2
DO50805
0 years, male, NA, stage:2, alive, 690 days
1244.5
DO48672
0 years, male, NA, stage:2, alive, 450 days
1238.8
DO50822
0 years, male, NA, stage:2, alive, 510 days
1200.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
1188.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
1187.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
1177.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
1168.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
1162.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
1146.2
DO48751
0 years, male, NA, stage:2, dead, 480 days
1143.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
1132.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
1125.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
1124.8
DO48695
0 years, male, NA, stage:2, alive, 720 days
1111.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
1086.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
1085.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
1080.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
1079.5
DO45229
0 years, male, NA, stage:1, alive, 990 days
1064.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
1059.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
1014.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
981.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
970.3
DO45165
0 years, male, NA, stage:2, alive, 690 days
948.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
935.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
924.3
DO227643
0 years, male, NA, stage:2, alive, 1260 days
914.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
903.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
900.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
897.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
883.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
873.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
870.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
850.9
DO23516
0 years, male, NA, stage:3, dead, 20 days
827.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
824.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
821.8
DO50799
0 years, female, NA, stage:2, alive, 540 days
768.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
750.0
DO50840
0 years, male, NA, stage:2, alive, 330 days
748.0
DO23528
0 years, female, NA, stage:2, alive, 1020 days
746.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
743.3
DO48760
0 years, female, NA, stage:2, alive, 690 days
741.4
DO45169
0 years, male, NA, stage:3, alive, 1350 days
739.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
734.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
730.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
711.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
701.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
700.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
698.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
689.8
DO48701
0 years, male, NA, stage:2, alive, 780 days
685.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
675.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
660.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
657.2
DO23529
0 years, male, NA, stage:4, alive, 930 days
654.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
646.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
640.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
636.8
DO45137
0 years, male, NA, stage:1, alive, 1320 days
632.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
630.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
627.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
624.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
618.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
612.1
DO23532
0 years, female, NA, stage:1, alive, 960 days
598.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
593.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
571.6
DO45167
0 years, male, NA, stage:2, dead, 1440 days
569.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
567.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
560.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
541.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
538.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
538.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
531.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
527.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
518.3
DO23548
0 years, female, NA, stage:1, alive, 840 days
513.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
510.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
510.2
DO23540
0 years, male, NA, stage:1, alive, 750 days
506.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
505.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
497.9
DO45092
0 years, male, NA, stage:4, dead, 1200 days
497.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
495.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
452.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
452.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
451.0
DO45219
0 years, male, NA, stage:2, alive, 1080 days
443.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
436.3
DO45253
0 years, male, NA, stage:2, alive, 870 days
430.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
430.3
DO50806
0 years, male, NA, stage:4, alive, 540 days
427.8
DO45159
0 years, male, NA, stage:3, alive, 1470 days
427.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
424.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
419.7
DO45135
0 years, male, NA, stage:1, alive, 1410 days
418.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
413.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
411.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
389.0
DO45273
0 years, male, NA, stage:2, alive, 480 days
376.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
372.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
369.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
369.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
368.8
DO48681
0 years, male, NA, stage:2, alive, 900 days
368.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
367.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
365.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
364.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
363.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
349.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
348.8
DO45163
0 years, male, NA, stage:2, alive, 960 days
338.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
335.3
DO45113
0 years, male, NA, stage:3, alive, 1560 days
332.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
317.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
313.3
DO23509
0 years, male, NA, stage:3, dead, 780 days
304.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
292.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
291.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
288.6
DO45131
0 years, male, NA, stage:4, dead, 360 days
283.9
DO50774
0 years, female, NA, stage:2, alive, 720 days
275.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
270.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
260.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
253.7
DO23551
0 years, male, NA, stage:3, dead, 150 days
237.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
235.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
228.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
226.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
213.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
210.3
DO45269
0 years, male, NA, stage:3, alive, 750 days
209.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
205.8
DO45207
0 years, male, NA, stage:1, alive, 1050 days
202.7
DO23521
0 years, male, NA, stage:3, alive, 1110 days
197.8
DO23525
0 years, male, NA, stage:4, alive, 1050 days
197.6
DO45145
0 years, male, NA, stage:3, dead, 60 days
188.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
177.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
177.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
175.9
DO48730
0 years, female, NA, stage:2, alive, 630 days
173.7
DO50778
0 years, male, NA, stage:4, alive, 630 days
166.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
164.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
162.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
160.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
157.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
148.6
DO23517
0 years, male, NA, stage:2, alive, 1200 days
141.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
140.0
DO48728
0 years, female, NA, stage:2, alive, 150 days
134.3
DO48715
0 years, female, NA, stage:2, dead, 690 days
134.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
131.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
130.6
DO45237
0 years, male, NA, stage:2, alive, 900 days
129.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
127.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
125.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
118.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
112.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
106.5
DO45139
0 years, male, NA, stage:3, alive, 1320 days
97.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
96.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
93.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
91.9
DO23519
0 years, male, NA, stage:3, alive, 630 days
89.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
87.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
69.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
68.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
67.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
63.9
DO45249
0 years, male, NA, stage:1, alive, 630 days
57.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
53.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
52.0
DO45247
0 years, female, NA, stage:2, alive, 210 days
49.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
47.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
42.3
DO48717
0 years, male, NA, stage:4, dead, 180 days
37.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
34.7
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.1
DO45251
0 years, female, NA, stage:2, alive, 900 days
22.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
21.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
20.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
18.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.8
DO45259
0 years, male, NA, stage:3, alive, 330 days
16.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
15.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
12.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
11.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
10.4
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
6.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
5.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
3.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
1.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
1.2
DO45279
0 years, male, NA, stage:3, alive, 1290 days
0.5
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.3
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
471
Tumor
N/A
351
Tumor
N/A
472
Normal
N/A
231
Tumor
N/A
352
Normal
N/A
473
Tumor
N/A
111
Normal
N/A
232
Normal
N/A
353
Tumor
N/A
474
Normal
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
477
Tumor
N/A
357
Tumor
N/A
478
Normal
N/A
358
Normal
N/A
911
Tumor
N/A
912
Normal
N/A
913
Tumor
N/A
914
Normal
N/A
915
Tumor
N/A
916
Normal
N/A
917
Tumor
N/A
918
Normal
N/A
481
Tumor
N/A
361
Tumor
N/A
482
Normal
N/A
362
Normal
N/A
483
Tumor
N/A
363
Tumor
N/A
484
Normal
N/A
364
Normal
N/A
123
Tumor
N/A
365
Tumor
N/A
124
Normal
N/A
366
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
367
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
368
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
921
Tumor
N/A
922
Normal
N/A
923
Tumor
N/A
924
Normal
N/A
925
Tumor
N/A
926
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
131
Tumor
N/A
494
Normal
N/A
132
Normal
N/A
375
Tumor
N/A
376
Normal
N/A
497
Tumor
N/A
135
Tumor
N/A
498
Normal
N/A
136
Normal
N/A
257
Tumor
N/A
137
Tumor
N/A
258
Normal
N/A
138
Normal
N/A
813
Tumor
N/A
814
Normal
N/A
815
Tumor
N/A
816
Normal
N/A
937
Tumor
N/A
817
Tumor
N/A
938
Normal
N/A
818
Normal
N/A
261
Tumor
N/A
141
Tumor
N/A
262
Normal
N/A
383
Tumor
N/A
142
Normal
N/A
384
Normal
N/A
385
Tumor
N/A
386
Normal
N/A
145
Tumor
N/A
387
Tumor
N/A
146
Normal
N/A
267
Tumor
N/A
388
Normal
N/A
147
Tumor
N/A
268
Normal
N/A
148
Normal
N/A
943
Tumor
N/A
823
Tumor
N/A
944
Normal
N/A
824
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
391
Tumor
N/A
271
Tumor
N/A
392
Normal
N/A
272
Normal
N/A
393
Tumor
N/A
394
Normal
N/A
395
Tumor
N/A
396
Normal
N/A
277
Tumor
N/A
1016
Normal
N/A
278
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
951
Tumor
N/A
1013
Tumor
N/A
952
Normal
N/A
953
Tumor
N/A
954
Normal
N/A
713
Tumor
N/A
955
Tumor
N/A
714
Normal
N/A
956
Normal
N/A
715
Tumor
N/A
957
Tumor
N/A
716
Normal
N/A
958
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
161
Tumor
N/A
162
Normal
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
721
Tumor
N/A
963
Tumor
N/A
722
Normal
N/A
964
Normal
N/A
723
Tumor
N/A
965
Tumor
N/A
724
Normal
N/A
966
Normal
N/A
967
Tumor
N/A
968
Normal
N/A
727
Tumor
N/A
728
Normal
N/A
1044
Normal
N/A
1043
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
171
Tumor
N/A
172
Normal
N/A
297
Tumor
N/A
298
Normal
N/A
851
Tumor
N/A
852
Normal
N/A
975
Tumor
N/A
976
Normal
N/A
977
Tumor
N/A
615
Tumor
N/A
857
Tumor
N/A
978
Normal
N/A
616
Normal
N/A
737
Tumor
N/A
858
Normal
N/A
617
Tumor
N/A
738
Normal
N/A
618
Normal
N/A
185
Tumor
N/A
186
Normal
N/A
187
Tumor
N/A
188
Normal
N/A
981
Tumor
N/A
861
Tumor
N/A
982
Normal
N/A
741
Tumor
N/A
862
Normal
N/A
983
Tumor
N/A
742
Normal
N/A
863
Tumor
N/A
984
Normal
N/A
1046
Normal
N/A
743
Tumor
N/A
864
Normal
N/A
1045
Tumor
N/A
744
Normal
N/A
865
Tumor
N/A
745
Tumor
N/A
866
Normal
N/A
746
Normal
N/A
867
Tumor
N/A
868
Normal
N/A
627
Tumor
N/A
628
Normal
N/A
191
Tumor
N/A
192
Normal
N/A
195
Tumor
N/A
196
Normal
N/A
873
Tumor
N/A
874
Normal
N/A
513
Tumor
N/A
755
Tumor
N/A
514
Normal
N/A
635
Tumor
N/A
756
Normal
N/A
877
Tumor
N/A
515
Tumor
N/A
636
Normal
N/A
878
Normal
N/A
516
Normal
N/A
517
Tumor
N/A
518
Normal
N/A
881
Tumor
N/A
882
Normal
N/A
641
Tumor
N/A
883
Tumor
N/A
642
Normal
N/A
884
Normal
N/A
523
Tumor
N/A
524
Normal
N/A
525
Tumor
N/A
526
Normal
N/A
647
Tumor
N/A
527
Tumor
N/A
648
Normal
N/A
528
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
533
Tumor
N/A
413
Tumor
N/A
534
Normal
N/A
414
Normal
N/A
535
Tumor
N/A
777
Tumor
N/A
415
Tumor
N/A
536
Normal
N/A
778
Normal
N/A
416
Normal
N/A
537
Tumor
N/A
538
Normal
N/A
661
Tumor
N/A
662
Normal
N/A
421
Tumor
N/A
663
Tumor
N/A
422
Normal
N/A
664
Normal
N/A
785
Tumor
N/A
423
Tumor
N/A
665
Tumor
N/A
786
Normal
N/A
424
Normal
N/A
545
Tumor
N/A
666
Normal
N/A
425
Tumor
N/A
546
Normal
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
671
Tumor
N/A
672
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
553
Tumor
N/A
312
Normal
N/A
433
Tumor
N/A
554
Normal
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
557
Tumor
N/A
558
Normal
N/A
563
Tumor
N/A
443
Tumor
N/A
564
Normal
N/A
685
Tumor
N/A
444
Normal
N/A
686
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
567
Tumor
N/A
447
Tumor
N/A
568
Normal
N/A
327
Tumor
N/A
448
Normal
N/A
328
Normal
N/A
571
Tumor
N/A
451
Tumor
N/A
572
Normal
N/A
331
Tumor
N/A
452
Normal
N/A
573
Tumor
N/A
211
Tumor
N/A
332
Normal
N/A
574
Normal
N/A
695
Tumor
N/A
212
Normal
N/A
696
Normal
N/A
213
Tumor
N/A
455
Tumor
N/A
697
Tumor
N/A
214
Normal
N/A
456
Normal
N/A
698
Normal
N/A
217
Tumor
N/A
218
Normal
N/A
461
Tumor
N/A
341
Tumor
N/A
462
Normal
N/A
221
Tumor
N/A
342
Normal
N/A
463
Tumor
N/A
222
Normal
N/A
343
Tumor
N/A
464
Normal
N/A
223
Tumor
N/A
344
Normal
N/A
465
Tumor
N/A
224
Normal
N/A
466
Normal
N/A
467
Tumor
N/A
468
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.