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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ARHGEF40 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
7.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
38.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
35.4
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
28.1
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
23.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
23.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
23.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
23.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
20.8
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
20.7
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
20.4
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
19.2
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
19.0
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
18.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
18.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
18.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
18.4
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
18.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
18.0
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
18.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
18.0
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
17.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
17.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
17.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
17.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
16.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
16.6
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
16.4
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
16.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
16.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
15.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
15.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
15.4
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
15.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
15.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
14.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
14.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
14.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
14.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
14.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
14.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.4
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
14.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
14.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
13.7
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
13.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
13.5
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
13.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
13.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.9
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
12.8
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
12.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
12.7
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
12.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
12.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
12.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
12.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
12.3
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
12.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
12.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
12.2
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
12.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
11.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
11.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
11.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
11.3
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
11.2
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
11.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.1
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
11.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
11.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
11.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
10.9
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
10.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
10.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
10.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
10.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
10.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
10.6
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
10.5
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.5
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
10.4
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
10.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
10.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
10.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
10.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
10.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
10.1
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
10.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
9.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
9.9
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
9.9
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
9.9
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
9.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
9.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
9.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
9.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
9.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
9.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
9.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
9.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
9.3
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
9.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
9.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
9.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
9.0
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
9.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
9.0
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
9.0
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
8.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
8.9
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.8
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
8.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
8.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
8.6
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
8.6
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
8.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
8.5
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
8.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
8.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
8.4
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
8.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
8.3
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
8.3
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
8.2
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.2
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
8.0
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
8.0
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
8.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
7.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
7.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
7.6
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.6
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
7.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
7.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
7.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
7.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
7.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
7.3
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
7.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
7.3
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
7.2
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
7.2
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
7.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
7.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
7.1
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
7.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
7.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
7.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
6.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
6.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.9
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.8
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.8
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
6.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.8
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
6.7
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
6.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
6.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
6.6
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.6
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.5
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
6.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
6.5
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
6.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
6.3
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
6.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
6.3
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
6.2
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
6.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.2
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
6.2
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
6.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
6.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
6.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
6.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
6.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.0
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
5.9
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
5.9
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
5.9
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
5.7
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
5.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.6
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
5.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.6
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
5.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
5.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
5.4
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
5.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.3
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
5.3
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
5.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.3
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
5.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
5.1
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
5.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.0
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
5.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
4.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
4.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
4.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
4.8
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.7
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
4.7
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
4.7
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
4.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
4.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
4.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
4.5
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
4.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
4.5
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
4.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
4.5
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
4.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
4.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
4.3
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
4.3
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
4.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
4.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.2
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
4.1
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
4.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
4.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
3.9
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
3.9
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
3.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
3.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
3.8
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
3.7
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
3.7
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
3.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
3.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
3.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
3.6
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
3.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
3.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
3.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
3.4
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.4
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
3.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
3.2
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
3.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.1
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
3.1
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
3.1
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
3.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
3.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
2.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.9
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
2.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
2.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
2.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
2.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
2.7
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
2.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
2.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
2.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
2.4
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
2.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
2.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.3
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
2.1
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
2.1
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
2.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
2.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
2.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.9
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
1.9
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.8
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.7
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
1.6
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
1.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
1.5
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
1.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
1.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
1.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
1.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.1
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
ARHGEF40 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
17.5
Number of samples
231
Samples
Sample
Description
TPM
DO45279
0 years, male, NA, stage:3, alive, 1290 days
107.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
85.9
DO50785
0 years, male, NA, stage:4, dead, 90 days
74.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
54.6
DO45215
0 years, male, NA, stage:2, alive, 1170 days
49.6
DO45107
0 years, female, NA, stage:2, alive, 1710 days
49.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
48.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
46.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
45.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
45.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
45.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
41.7
DO45155
0 years, male, NA, stage:2, alive, 2160 days
38.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
37.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
37.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
35.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
35.2
DO23548
0 years, female, NA, stage:1, alive, 840 days
34.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
34.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
33.7
DO45101
0 years, male, NA, stage:2, alive, 1680 days
32.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
31.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
30.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
30.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
29.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
29.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
28.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
27.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
27.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
27.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
27.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
27.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
27.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
27.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
27.2
DO45239
0 years, male, NA, stage:2, alive, 870 days
27.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
26.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
26.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
25.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
25.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
25.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
25.3
DO45183
0 years, female, NA, stage:2, dead, 570 days
24.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
24.8
DO45185
0 years, male, NA, stage:2, alive, 600 days
24.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
23.1
DO45113
0 years, male, NA, stage:3, alive, 1560 days
22.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
22.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
22.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
22.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.9
DO45243
0 years, female, NA, stage:3, alive, 930 days
21.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
21.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
21.6
DO48682
0 years, female, NA, stage:3, dead, 120 days
21.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.5
DO50811
0 years, male, NA, stage:1, alive, 450 days
21.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
21.3
DO48732
0 years, male, NA, stage:3, alive, 630 days
21.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
21.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
20.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
20.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
20.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
20.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
20.0
DO48693
0 years, male, NA, stage:2, alive, 900 days
19.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
19.9
DO50806
0 years, male, NA, stage:4, alive, 540 days
19.7
DO227643
0 years, male, NA, stage:2, alive, 1260 days
19.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
19.4
DO48730
0 years, female, NA, stage:2, alive, 630 days
19.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
19.2
DO45193
0 years, female, NA, stage:4, dead, 120 days
19.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
18.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
18.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
18.6
DO23546
0 years, male, NA, stage:2, alive, 1050 days
18.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
18.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.2
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
17.7
DO23536
0 years, male, NA, stage:2, alive, 930 days
17.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
17.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
17.5
DO50807
0 years, male, NA, stage:1, alive, 540 days
17.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
17.3
DO45217
0 years, female, NA, stage:3, dead, 270 days
17.1
DO45233
0 years, male, NA, stage:3, alive, 900 days
17.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
16.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
16.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
16.2
DO50789
0 years, female, NA, stage:2, alive, 570 days
16.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
16.1
DO48737
0 years, male, NA, stage:1, alive, 720 days
16.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
16.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
15.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
15.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
15.8
DO50800
0 years, male, NA, stage:2, alive, 510 days
15.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
15.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.4
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.3
DO48733
0 years, male, NA, stage:2, alive, 600 days
15.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
15.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
14.9
DO45181
0 years, female, NA, stage:2, alive, 1200 days
14.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
14.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.8
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
14.5
DO50776
0 years, male, NA, stage:1, alive, 690 days
14.5
DO45235
0 years, female, NA, stage:1, alive, 900 days
14.3
DO45229
0 years, male, NA, stage:1, alive, 990 days
14.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
14.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.0
DO45153
0 years, female, NA, stage:2, alive, 1380 days
13.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
13.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
13.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
13.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
13.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
13.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
13.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.0
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.9
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
12.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
12.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
12.2
DO48761
0 years, male, NA, stage:2, alive, 870 days
12.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
12.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
11.9
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.9
DO23539
0 years, male, NA, stage:1, alive, 1110 days
11.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
11.6
DO48700
0 years, female, NA, stage:2, alive, 810 days
11.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
11.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
11.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
11.3
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.1
DO45297
0 years, female, NA, stage:4, dead, 1260 days
11.0
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
11.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
10.9
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.8
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.8
DO48716
0 years, male, NA, stage:2, alive, 720 days
10.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
10.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
10.8
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
10.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
10.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
10.5
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
10.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
10.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.0
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
9.8
DO45103
0 years, male, NA, stage:3, alive, 450 days
9.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.7
DO45117
0 years, female, NA, stage:2, dead, 1110 days
9.7
DO45115
0 years, male, NA, stage:2, alive, 840 days
9.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
9.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
9.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
9.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
9.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
9.4
DO45145
0 years, male, NA, stage:3, dead, 60 days
9.3
DO45289
0 years, female, NA, stage:3, alive, 360 days
9.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
9.1
DO45129
0 years, male, NA, stage:3, alive, 1470 days
9.1
DO50819
0 years, female, NA, stage:2, alive, 510 days
9.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
9.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
9.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
8.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
8.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
8.5
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.4
DO45099
0 years, male, NA, stage:3, alive, 1590 days
8.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
8.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
8.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.3
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.7
DO50840
0 years, male, NA, stage:2, alive, 330 days
7.6
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.6
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
7.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
6.8
DO48759
0 years, male, NA, stage:3, alive, 720 days
6.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
6.8
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
6.6
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
5.9
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
5.7
DO45301
0 years, male, NA, stage:2, dead, 1440 days
5.6
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
5.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
5.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
4.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.5
DO45285
0 years, male, NA, stage:3, alive, 480 days
3.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
2.9
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.7
DO50808
0 years, male, NA, stage:2, alive, 570 days
2.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
1.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
487
Tumor
1.2
1041
Tumor
0.8
357
Tumor
0.8
911
Tumor
0.7
755
Tumor
0.7
813
Tumor
0.7
515
Tumor
0.6
445
Tumor
0.6
815
Tumor
0.5
425
Tumor
0.5
523
Tumor
0.5
743
Tumor
0.5
123
Tumor
0.4
431
Tumor
0.4
271
Tumor
0.4
635
Tumor
0.4
737
Tumor
0.4
131
Tumor
0.4
915
Tumor
0.4
553
Tumor
0.4
443
Tumor
0.4
413
Tumor
0.4
533
Tumor
0.4
865
Tumor
0.4
983
Tumor
0.3
452
Normal
0.3
135
Tumor
0.3
221
Tumor
0.3
955
Tumor
0.3
695
Tumor
0.3
497
Tumor
0.3
297
Tumor
0.3
355
Tumor
0.3
465
Tumor
0.3
1025
Tumor
0.3
112
Tumor
0.3
883
Tumor
0.3
473
Tumor
0.3
636
Normal
0.3
863
Tumor
0.3
124
Normal
0.3
648
Normal
0.3
921
Tumor
0.3
285
Tumor
0.3
977
Tumor
0.2
277
Tumor
0.2
1031
Tumor
0.2
114
Normal
0.2
975
Tumor
0.2
937
Tumor
0.2
358
Normal
0.2
873
Tumor
0.2
628
Normal
0.2
878
Normal
0.2
396
Normal
0.2
365
Tumor
0.2
912
Normal
0.2
128
Normal
0.2
814
Normal
0.2
642
Normal
0.2
222
Normal
0.2
618
Normal
0.2
665
Tumor
0.2
368
Normal
0.2
554
Normal
0.2
161
Tumor
0.2
534
Normal
0.2
557
Tumor
0.2
558
Normal
0.2
436
Normal
0.2
213
Tumor
0.2
641
Tumor
0.2
127
Tumor
0.2
361
Tumor
0.2
464
Normal
0.2
141
Tumor
0.2
223
Tumor
0.2
777
Tumor
0.2
385
Tumor
0.2
267
Tumor
0.2
952
Normal
0.2
481
Tumor
0.2
471
Tumor
0.2
963
Tumor
0.2
187
Tumor
0.2
663
Tumor
0.2
483
Tumor
0.2
913
Tumor
0.2
125
Tumor
0.2
746
Normal
0.2
344
Normal
0.2
341
Tumor
0.2
528
Normal
0.2
136
Normal
0.2
444
Normal
0.2
672
Normal
0.2
574
Normal
0.2
455
Tumor
0.2
967
Tumor
0.2
394
Normal
0.2
384
Normal
0.2
388
Normal
0.1
484
Normal
0.1
162
Normal
0.1
685
Tumor
0.1
376
Normal
0.1
137
Tumor
0.1
488
Normal
0.1
461
Tumor
0.1
383
Tumor
0.1
535
Tumor
0.1
132
Normal
0.1
327
Tumor
0.1
571
Tumor
0.1
343
Tumor
0.1
786
Normal
0.1
527
Tumor
0.1
433
Tumor
0.1
968
Normal
0.1
918
Normal
0.1
354
Normal
0.1
662
Normal
0.1
671
Tumor
0.1
884
Normal
0.1
232
Normal
0.1
261
Tumor
0.1
393
Tumor
0.1
426
Normal
0.1
111
Normal
0.1
964
Normal
0.1
721
Tumor
0.1
661
Tumor
0.1
432
Normal
0.1
312
Normal
0.1
976
Normal
0.1
352
Normal
0.1
342
Normal
0.1
353
Tumor
0.1
422
Normal
0.1
778
Normal
0.1
474
Normal
0.1
196
Normal
0.1
616
Normal
0.1
466
Normal
0.1
351
Tumor
0.1
423
Tumor
0.1
617
Tumor
0.1
546
Normal
0.1
278
Normal
0.1
412
Normal
0.1
268
Normal
0.1
392
Normal
0.1
468
Normal
0.1
785
Tumor
0.1
148
Normal
0.1
186
Normal
0.1
286
Normal
0.1
446
Normal
0.1
142
Normal
0.1
958
Normal
0.1
824
Normal
0.1
615
Tumor
0.1
744
Normal
0.1
284
Normal
0.1
545
Tumor
0.1
1016
Normal
0.1
477
Tumor
0.1
231
Tumor
0.1
923
Tumor
0.1
314
Normal
0.1
456
Normal
0.1
172
Normal
0.1
356
Normal
0.1
715
Tumor
0.1
414
Normal
0.1
756
Normal
0.1
525
Tumor
0.1
126
Normal
0.1
428
Normal
0.1
313
Tumor
0.1
258
Normal
0.1
513
Tumor
0.0
517
Tumor
0.0
864
Normal
0.0
938
Normal
0.0
435
Tumor
0.0
171
Tumor
0.0
463
Tumor
0.0
421
Tumor
0.0
138
Normal
0.0
462
Normal
0.0
411
Tumor
0.0
283
Tumor
0.0
516
Normal
0.0
492
Normal
0.0
424
Normal
0.0
524
Normal
0.0
627
Tumor
0.0
214
Normal
0.0
858
Normal
0.0
984
Normal
0.0
982
Normal
0.0
951
Tumor
0.0
195
Tumor
0.0
572
Normal
0.0
563
Tumor
0.0
332
Normal
0.0
391
Tumor
0.0
145
Tumor
0.0
218
Normal
0.0
386
Normal
0.0
434
Normal
0.0
696
Normal
0.0
298
Normal
0.0
192
Normal
0.0
363
Tumor
0.0
686
Normal
0.0
714
Normal
0.0
647
Tumor
0.0
1042
Normal
0.0
538
Normal
0.0
537
Tumor
0.0
664
Normal
0.0
666
Normal
0.0
965
Tumor
0.0
1043
Tumor
0.0
478
Normal
0.0
491
Tumor
0.0
228
Normal
0.0
185
Tumor
0.0
953
Tumor
0.0
914
Normal
0.0
568
Normal
0.0
713
Tumor
0.0
1027
Tumor
0.0
518
Normal
0.0
738
Normal
0.0
944
Normal
0.0
862
Normal
0.0
427
Tumor
0.0
387
Tumor
0.0
472
Normal
0.0
514
Normal
0.0
482
Normal
0.0
498
Normal
0.0
866
Normal
0.0
1032
Normal
0.0
227
Tumor
0.0
573
Tumor
0.0
272
Normal
0.0
217
Tumor
0.0
1014
Normal
0.0
722
Normal
0.0
188
Normal
0.0
1015
Tumor
0.0
816
Normal
0.0
1026
Normal
0.0
212
Normal
0.0
146
Normal
-0.1
366
Normal
-0.1
416
Normal
-0.1
868
Normal
-0.1
362
Normal
-0.1
494
Normal
-0.1
262
Normal
-0.1
191
Tumor
-0.1
728
Normal
-0.1
745
Tumor
-0.1
956
Normal
-0.1
1028
Normal
-0.1
922
Normal
-0.1
1013
Tumor
-0.1
224
Normal
-0.1
954
Normal
-0.1
881
Tumor
-0.1
966
Normal
-0.1
564
Normal
-0.1
311
Tumor
-0.1
536
Normal
-0.1
375
Tumor
-0.1
818
Normal
-0.1
526
Normal
-0.1
493
Tumor
-0.1
874
Normal
-0.1
823
Tumor
-0.1
882
Normal
-0.1
698
Normal
-0.1
943
Tumor
-0.1
257
Tumor
-0.1
716
Normal
-0.1
395
Tumor
-0.1
1022
Normal
-0.1
957
Tumor
-0.1
447
Tumor
-0.1
926
Normal
-0.1
567
Tumor
-0.1
1046
Normal
-0.1
113
Tumor
-0.1
1021
Tumor
-0.1
451
Tumor
-0.1
331
Tumor
-0.2
877
Tumor
-0.2
742
Normal
-0.2
861
Tumor
-0.2
415
Tumor
-0.2
981
Tumor
-0.2
364
Normal
-0.2
367
Tumor
-0.2
925
Tumor
-0.2
1044
Normal
-0.2
851
Tumor
-0.2
1045
Tumor
-0.2
978
Normal
-0.2
917
Tumor
-0.2
924
Normal
-0.2
817
Tumor
-0.2
916
Normal
-0.2
467
Tumor
-0.2
448
Normal
-0.2
727
Tumor
-0.3
857
Tumor
-0.3
852
Normal
-0.3
147
Tumor
-0.3
328
Normal
-0.3
867
Tumor
-0.4
723
Tumor
-0.4
697
Tumor
-0.4
741
Tumor
-0.4
724
Normal
-0.5
211
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
