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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FUNDC2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
1.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
23.0
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
7.6
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
7.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
6.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
6.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
6.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
5.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
5.9
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
4.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
4.5
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
4.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
4.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
4.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
4.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
4.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
4.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
4.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
3.7
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
3.6
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
3.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
3.5
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
3.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
3.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
3.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
3.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
3.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
3.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
3.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
3.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
3.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
3.0
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
2.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
2.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
2.7
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
2.7
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
2.7
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
2.6
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
2.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
2.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
2.5
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
2.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
2.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
2.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
2.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
2.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
2.3
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
2.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
2.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
2.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
2.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
2.2
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
2.2
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
2.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
2.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.2
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
2.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
2.2
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
2.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
2.1
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
2.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
2.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
2.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
2.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
2.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
2.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
2.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
2.0
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
2.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
2.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
1.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
1.9
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
1.9
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
1.9
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
1.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
1.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
1.9
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
1.9
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
1.8
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
1.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
1.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
1.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
1.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
1.8
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
1.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
1.8
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1.7
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
1.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
1.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
1.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
1.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
1.7
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
1.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
1.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
1.7
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
1.7
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
1.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1.6
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
1.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
1.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
1.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
1.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
1.6
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.6
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
1.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
1.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
1.5
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
1.5
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.5
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
1.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
1.5
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
1.5
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
1.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
1.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
1.5
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
1.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
1.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
1.5
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
1.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
1.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
1.5
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
1.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
1.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
1.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
1.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
1.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
1.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
1.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
1.4
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
1.4
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
1.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
1.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
1.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
1.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
1.4
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
1.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
1.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
1.3
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
1.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1.3
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
1.3
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
1.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
1.3
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
1.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.3
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
1.3
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
1.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
1.3
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
1.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.3
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
1.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
1.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
1.2
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
1.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
1.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
1.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
1.2
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
1.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
1.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
1.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
1.2
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
1.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
1.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
1.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
1.2
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
1.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
1.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
1.2
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
1.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
1.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
1.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
1.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
1.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
1.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
1.1
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
1.1
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
1.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
1.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
1.1
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
1.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
1.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
1.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.1
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
1.0
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.0
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1.0
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
1.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
1.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
1.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
1.0
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
1.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
1.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
1.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
1.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1.0
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
1.0
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
1.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
1.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
1.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
1.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
1.0
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.0
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.9
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.9
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.9
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.9
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.9
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
0.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.8
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
0.8
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.8
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.8
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.8
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.8
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
0.8
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.7
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.7
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.7
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.7
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.7
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.7
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
0.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.7
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.7
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.7
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.6
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.6
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.6
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.6
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.6
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.6
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.6
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.5
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.5
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.5
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.5
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.4
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.4
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.4
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.4
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.3
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.3
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.2
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.2
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FUNDC2 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.1
Number of samples
231
Samples
Sample
Description
TPM
DO45289
0 years, female, NA, stage:3, alive, 360 days
64.9
DO48741
0 years, male, NA, stage:3, alive, 240 days
61.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
57.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
52.6
DO23519
0 years, male, NA, stage:3, alive, 630 days
44.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
41.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
40.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
40.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
39.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
39.1
DO45305
0 years, male, NA, stage:4, alive, 300 days
38.4
DO45275
0 years, male, NA, stage:3, dead, 10 days
35.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
35.0
DO45149
0 years, female, NA, stage:2, alive, 1260 days
34.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
34.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
33.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
31.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
30.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
29.7
DO45267
0 years, male, NA, stage:3, dead, 570 days
27.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
27.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
27.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
26.8
DO23511
0 years, female, NA, stage:3, dead, 180 days
25.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
25.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
25.2
DO45285
0 years, male, NA, stage:3, alive, 480 days
24.8
DO23523
0 years, male, NA, stage:3, alive, 1080 days
24.5
DO50805
0 years, male, NA, stage:2, alive, 690 days
24.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
23.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
22.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
21.9
DO48682
0 years, female, NA, stage:3, dead, 120 days
21.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
21.4
DO45093
0 years, male, NA, stage:2, dead, 720 days
21.2
DO23513
0 years, male, NA, stage:3, alive, 1200 days
21.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
20.9
DO23521
0 years, male, NA, stage:3, alive, 1110 days
20.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
20.3
DO45131
0 years, male, NA, stage:4, dead, 360 days
20.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
19.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
19.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
19.6
DO23518
0 years, male, NA, stage:2, alive, 1320 days
19.5
DO50845
0 years, male, NA, stage:3, alive, 210 days
19.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
19.1
DO45095
0 years, male, NA, stage:2, alive, 1620 days
19.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
18.8
DO23526
0 years, male, NA, stage:3, alive, 1050 days
18.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
18.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
18.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
18.1
DO45211
0 years, male, NA, stage:3, alive, 240 days
18.0
DO48704
0 years, female, NA, stage:3, alive, 750 days
17.9
DO50839
0 years, female, NA, stage:3, alive, 330 days
17.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
17.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
16.7
DO45139
0 years, male, NA, stage:3, alive, 1320 days
16.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
16.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
16.5
DO50791
0 years, female, NA, stage:1, dead, 480 days
16.5
DO227801
0 years, female, NA, stage:1, alive, 660 days
16.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.3
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
16.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
16.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
16.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
16.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
16.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
15.8
DO50859
0 years, male, NA, stage:2, alive, 180 days
15.8
DO45161
0 years, male, NA, stage:2, dead, 540 days
15.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
15.4
DO45171
0 years, male, NA, stage:3, alive, 600 days
15.2
DO45091
0 years, male, NA, stage:2, dead, 1320 days
15.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
15.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
15.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.0
DO48737
0 years, male, NA, stage:1, alive, 720 days
14.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
14.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
14.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
14.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
14.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
14.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
13.8
DO48715
0 years, female, NA, stage:2, dead, 690 days
13.8
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.6
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
13.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
13.4
DO45269
0 years, male, NA, stage:3, alive, 750 days
13.3
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
13.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
13.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
13.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
13.0
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.8
DO45165
0 years, male, NA, stage:2, alive, 690 days
12.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
12.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.4
DO50818
0 years, male, NA, stage:2, alive, 510 days
12.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
12.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
12.4
DO48751
0 years, male, NA, stage:2, dead, 480 days
12.2
DO50809
0 years, male, NA, stage:3, dead, 720 days
12.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
12.2
DO45099
0 years, male, NA, stage:3, alive, 1590 days
12.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
12.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
12.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
11.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
11.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
11.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
11.7
DO45261
0 years, male, NA, stage:3, alive, 990 days
11.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
11.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
11.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.5
DO50825
0 years, male, NA, stage:2, alive, 390 days
11.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
11.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
11.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
11.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.0
DO50774
0 years, female, NA, stage:2, alive, 720 days
10.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
10.7
DO48757
0 years, female, NA, stage:3, alive, 480 days
10.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.6
DO50802
0 years, male, NA, stage:2, alive, 930 days
10.5
DO23539
0 years, male, NA, stage:1, alive, 1110 days
10.5
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
10.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
10.3
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
10.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
10.3
DO45109
0 years, male, NA, stage:2, alive, 1590 days
10.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
10.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
10.0
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.0
DO23551
0 years, male, NA, stage:3, dead, 150 days
10.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
10.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
10.0
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.9
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.8
DO45197
0 years, male, NA, stage:2, alive, 1170 days
9.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.8
DO45241
0 years, male, NA, stage:1, alive, 1080 days
9.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
9.7
DO23528
0 years, female, NA, stage:2, alive, 1020 days
9.6
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
9.5
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.4
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
9.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
9.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.3
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.3
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.3
DO45213
0 years, male, NA, stage:1, alive, 1200 days
9.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
9.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.2
DO45235
0 years, female, NA, stage:1, alive, 900 days
9.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
8.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
8.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
8.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
8.6
DO48695
0 years, male, NA, stage:2, alive, 720 days
8.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
8.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
8.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
8.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
8.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
8.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
8.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
7.9
DO50832
0 years, male, NA, stage:3, alive, 90 days
7.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
7.9
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.3
DO48706
0 years, male, NA, stage:2, alive, 870 days
7.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
7.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
7.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
6.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
6.7
DO50815
0 years, male, NA, stage:3, alive, 150 days
6.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
6.6
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
6.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
6.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
6.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.1
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
5.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
5.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
5.2
DO45123
0 years, female, NA, stage:2, dead, 570 days
5.2
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
5.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
5.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
4.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
487
Tumor
1.4
1027
Tumor
1.3
663
Tumor
1.2
1013
Tumor
0.9
527
Tumor
0.9
483
Tumor
0.9
227
Tumor
0.9
497
Tumor
0.9
393
Tumor
0.8
685
Tumor
0.8
923
Tumor
0.8
953
Tumor
0.8
513
Tumor
0.8
573
Tumor
0.8
571
Tumor
0.8
411
Tumor
0.8
695
Tumor
0.7
525
Tumor
0.7
313
Tumor
0.6
257
Tumor
0.6
557
Tumor
0.6
473
Tumor
0.6
851
Tumor
0.6
977
Tumor
0.6
493
Tumor
0.6
745
Tumor
0.5
861
Tumor
0.5
567
Tumor
0.5
135
Tumor
0.5
865
Tumor
0.5
857
Tumor
0.5
383
Tumor
0.5
913
Tumor
0.5
982
Normal
0.4
231
Tumor
0.4
925
Tumor
0.4
523
Tumor
0.4
737
Tumor
0.4
957
Tumor
0.4
863
Tumor
0.3
515
Tumor
0.3
478
Normal
0.3
915
Tumor
0.3
627
Tumor
0.3
491
Tumor
0.3
1014
Normal
0.3
963
Tumor
0.3
427
Tumor
0.3
724
Normal
0.3
385
Tumor
0.3
524
Normal
0.3
223
Tumor
0.3
526
Normal
0.3
984
Normal
0.3
533
Tumor
0.3
546
Normal
0.3
425
Tumor
0.3
1041
Tumor
0.3
964
Normal
0.3
343
Tumor
0.3
697
Tumor
0.3
862
Normal
0.3
873
Tumor
0.3
698
Normal
0.2
944
Normal
0.2
954
Normal
0.2
534
Normal
0.2
744
Normal
0.2
514
Normal
0.2
824
Normal
0.2
536
Normal
0.2
481
Tumor
0.2
364
Normal
0.2
142
Normal
0.2
926
Normal
0.2
823
Tumor
0.2
423
Tumor
0.2
965
Tumor
0.2
448
Normal
0.2
488
Normal
0.2
937
Tumor
0.2
545
Tumor
0.2
958
Normal
0.2
147
Tumor
0.2
867
Tumor
0.2
785
Tumor
0.2
938
Normal
0.2
412
Normal
0.2
912
Normal
0.2
212
Normal
0.2
686
Normal
0.1
864
Normal
0.1
518
Normal
0.1
818
Normal
0.1
431
Tumor
0.1
1026
Normal
0.1
261
Tumor
0.1
696
Normal
0.1
484
Normal
0.1
572
Normal
0.1
741
Tumor
0.1
528
Normal
0.1
443
Tumor
0.1
224
Normal
0.1
922
Normal
0.1
277
Tumor
0.1
554
Normal
0.1
538
Normal
0.1
858
Normal
0.1
1046
Normal
0.1
778
Normal
0.1
721
Tumor
0.1
981
Tumor
0.1
433
Tumor
0.1
866
Normal
0.1
918
Normal
0.1
283
Tumor
0.0
285
Tumor
0.0
966
Normal
0.0
498
Normal
0.0
813
Tumor
0.0
882
Normal
0.0
196
Normal
0.0
328
Normal
0.0
494
Normal
0.0
1032
Normal
0.0
355
Tumor
0.0
868
Normal
0.0
878
Normal
0.0
756
Normal
0.0
228
Normal
0.0
723
Tumor
0.0
635
Tumor
0.0
1016
Normal
0.0
137
Tumor
0.0
738
Normal
0.0
516
Normal
0.0
482
Normal
0.0
558
Normal
0.0
746
Normal
0.0
416
Normal
0.0
956
Normal
0.0
722
Normal
0.0
715
Tumor
0.0
716
Normal
0.0
943
Tumor
0.0
742
Normal
0.0
474
Normal
0.0
568
Normal
0.0
356
Normal
0.0
952
Normal
0.0
128
Normal
0.0
852
Normal
0.0
1045
Tumor
0.0
1044
Normal
0.0
728
Normal
0.0
161
Tumor
0.0
125
Tumor
0.0
492
Normal
0.0
636
Normal
0.0
472
Normal
-0.1
221
Tumor
-0.1
976
Normal
-0.1
1031
Tumor
-0.1
924
Normal
-0.1
1042
Normal
-0.1
665
Tumor
-0.1
363
Tumor
-0.1
415
Tumor
-0.1
284
Normal
-0.1
286
Normal
-0.1
786
Normal
-0.1
352
Normal
-0.1
131
Tumor
-0.1
171
Tumor
-0.1
461
Tumor
-0.1
436
Normal
-0.1
1028
Normal
-0.1
537
Tumor
-0.1
332
Normal
-0.1
884
Normal
-0.1
344
Normal
-0.1
1022
Normal
-0.1
883
Tumor
-0.1
394
Normal
-0.1
462
Normal
-0.1
553
Tumor
-0.1
422
Normal
-0.1
978
Normal
-0.1
267
Tumor
-0.1
477
Tumor
-0.1
421
Tumor
-0.1
714
Normal
-0.1
816
Normal
-0.1
921
Tumor
-0.1
968
Normal
-0.1
563
Tumor
-0.1
191
Tumor
-0.1
641
Tumor
-0.2
672
Normal
-0.2
916
Normal
-0.2
435
Tumor
-0.2
564
Normal
-0.2
1015
Tumor
-0.2
232
Normal
-0.2
214
Normal
-0.2
911
Tumor
-0.2
874
Normal
-0.2
574
Normal
-0.2
432
Normal
-0.2
951
Tumor
-0.2
211
Tumor
-0.2
1021
Tumor
-0.2
983
Tumor
-0.2
447
Tumor
-0.2
467
Tumor
-0.2
414
Normal
-0.2
975
Tumor
-0.2
535
Tumor
-0.2
358
Normal
-0.2
341
Tumor
-0.2
428
Normal
-0.2
755
Tumor
-0.2
727
Tumor
-0.2
424
Normal
-0.2
392
Normal
-0.2
314
Normal
-0.3
354
Normal
-0.3
466
Normal
-0.3
465
Tumor
-0.3
342
Normal
-0.3
357
Tumor
-0.3
471
Tumor
-0.3
376
Normal
-0.3
446
Normal
-0.3
617
Tumor
-0.3
616
Normal
-0.3
444
Normal
-0.3
1025
Tumor
-0.3
278
Normal
-0.3
817
Tumor
-0.3
375
Tumor
-0.3
218
Normal
-0.3
127
Tumor
-0.3
664
Normal
-0.3
615
Tumor
-0.3
384
Normal
-0.3
1043
Tumor
-0.3
955
Tumor
-0.3
222
Normal
-0.3
185
Tumor
-0.3
145
Tumor
-0.3
298
Normal
-0.3
111
Normal
-0.4
426
Normal
-0.4
713
Tumor
-0.4
217
Tumor
-0.4
262
Normal
-0.4
815
Tumor
-0.4
272
Normal
-0.4
914
Normal
-0.4
917
Tumor
-0.4
618
Normal
-0.4
628
Normal
-0.4
388
Normal
-0.4
666
Normal
-0.4
186
Normal
-0.4
881
Tumor
-0.4
331
Tumor
-0.4
327
Tumor
-0.4
258
Normal
-0.4
192
Normal
-0.4
464
Normal
-0.4
445
Tumor
-0.4
468
Normal
-0.4
146
Normal
-0.4
361
Tumor
-0.4
148
Normal
-0.4
396
Normal
-0.4
814
Normal
-0.4
662
Normal
-0.4
642
Normal
-0.4
312
Normal
-0.4
434
Normal
-0.4
124
Normal
-0.4
648
Normal
-0.4
213
Tumor
-0.5
647
Tumor
-0.5
456
Normal
-0.5
455
Tumor
-0.5
297
Tumor
-0.5
268
Normal
-0.5
353
Tumor
-0.5
311
Tumor
-0.5
365
Tumor
-0.5
386
Normal
-0.5
452
Normal
-0.5
395
Tumor
-0.5
517
Tumor
-0.5
387
Tumor
-0.5
187
Tumor
-0.5
362
Normal
-0.5
141
Tumor
-0.5
162
Normal
-0.5
451
Tumor
-0.5
271
Tumor
-0.6
132
Normal
-0.6
112
Tumor
-0.6
195
Tumor
-0.6
351
Tumor
-0.6
172
Normal
-0.6
126
Normal
-0.6
138
Normal
-0.6
136
Normal
-0.6
368
Normal
-0.7
114
Normal
-0.7
777
Tumor
-0.7
463
Tumor
-0.7
188
Normal
-0.7
743
Tumor
-0.7
123
Tumor
-0.8
661
Tumor
-0.8
113
Tumor
-0.9
671
Tumor
-0.9
391
Tumor
-0.9
366
Normal
-0.9
413
Tumor
-1.0
877
Tumor
-1.0
367
Tumor
-1.2
967
Tumor
-1.3
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
