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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
37.8
nTPM
HPA Brain:
173.0
nTPM
GTEx:
37.8
nTPM
FANTOM5:
4.0
Scaled Tags Per Million
Pig:
145.2
nTPM
Mouse:
62.8
nTPM
Allen mouse:
1.6
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
173.0
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 14.5
2219
Male, age 76, both hemispheres
107.6
1833
Male, age 53, unknown
15.1
1830
Male, age 51, unknown
10.5
2411
Female, age 72, unknown
5.4
1870
Female, age 42, unknown
1.9
2019
Male, age 18, unknown
1.6
2586
Male, age 75, left hemisphere
1.6
2828
Female, age 72, unknown
0.7
2666
Male, age 74, left hemisphere
0.6
1827
Male, age 72, unknown
0.2
Dorsal raphe nucleus nTPM: 68.0
2047
Male, age 72, unknown
159.2
2750
Male, age 76, both hemispheres
94.6
2298
Female, age 72, unknown
73.1
2016
Female, age 72, unknown
7.4
1828
Male, age 53, unknown
5.6
Inferior colliculus nTPM: 0.7
1890
Male, age 53, unknown
1.7
2849
Male, age 72, unknown
0.7
1848
Female, age 42, unknown
0.2
2097
Female, age 72, unknown
0.0
Median raphe nucleus nTPM: 173.0
2220
Male, age 76, midline
173.0
Periaquaductal grey, anterior nTPM: 0.8
2502
Female, age 75, unknown
2.1
1947
Male, age 18, unknown
0.4
1795
Male, age 51, unknown
0.0
Periaquaductal grey, dorsal nTPM: 8.3
2850
Male, age 76, both hemispheres
19.7
1840
Male, age 53, unknown
6.9
2464
Female, age 72, unknown
6.3
1831
Male, age 72, unknown
0.4
Periaquaductal grey, lateral nTPM: 1.7
2140
Male, age 76, both hemispheres
2.8
2053
Male, age 18, unknown
1.3
2272
Male, age 74, both hemispheres
0.9
Pretectal area nTPM: 1.4
2224
Female, age 72, unknown
6.1
1944
Female, age 72, unknown
3.0
2667
Female, age 75, unknown
2.2
1815
Male, age 53, unknown
1.0
2825
Male, age 18, unknown
0.9
2273
Male, age 74, both hemispheres
0.6
2007
Male, age 72, unknown
0.5
1817
Female, age 42, unknown
0.4
2316
Male, age 76, right hemisphere
0.4
2407
Male, age 75, both hemispheres
0.4
1816
Male, age 51, unknown
0.1
Red nucleus nTPM: 1.2
2725
Female, age 75, unknown
3.0
2584
Male, age 75, left hemisphere
2.8
1821
Female, age 72, unknown
1.6
2227
Male, age 72, unknown
1.2
2588
Male, age 74, left hemisphere
1.2
2769
Male, age 72, unknown
1.2
1904
Male, age 53, unknown
1.1
2785
Male, age 18, unknown
0.9
1865
Male, age 51, unknown
0.8
2503
Female, age 72, unknown
0.4
2823
Male, age 76, right hemisphere
0.4
1954
Female, age 42, unknown
0.3
Substantia nigra nTPM: 153.8
2241
Male, age 72, unknown
369.4
1916
Female, age 42, unknown
315.7
2699
Male, age 18, unknown
288.0
1851
Male, age 51, unknown
197.8
1941
Male, age 53, unknown
137.4
2409
Female, age 72, unknown
125.7
2665
Male, age 74, both hemispheres
53.9
1889
Female, age 72, unknown
38.1
2590
Female, age 75, unknown
6.9
2583
Male, age 75, right hemisphere
5.2
Superior colliculus nTPM: 0.9
2668
Female, age 75, unknown
2.3
2087
Female, age 72, unknown
2.0
1913
Female, age 42, unknown
1.3
1796
Male, age 53, unknown
0.8
1995
Male, age 72, unknown
0.8
2587
Male, age 74, left hemisphere
0.7
1895
Male, age 76, right hemisphere
0.3
2261
Male, age 18, unknown
0.3
2664
Male, age 75, both hemispheres
0.3
1839
Male, age 51, unknown
0.2
Ventral tegmental area nTPM: 111.4
2218
Male, age 76, both hemispheres
174.3
1915
Female, age 42, unknown
173.7
2410
Female, age 72, unknown
122.7
1942
Male, age 51, unknown
95.1
2223
Female, age 72, unknown
57.5
2021
Male, age 53, unknown
45.5
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
37.8
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 37.8
Samples: 139
Max nTPM: 283.4
Min nTPM: 0.0
Std nTPM: 51.4
Median nTPM: 13.8
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
283.4
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
225.3
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
170.5
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
169.1
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
166.2
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
156.3
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
143.3
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
136.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
136.4
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
134.5
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
131.4
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
130.6
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
126.9
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
122.2
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
121.4
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
104.1
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
101.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
96.5
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
93.0
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
88.3
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
87.5
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
83.5
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
83.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
80.0
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
79.3
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
77.9
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
73.9
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
70.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
69.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
69.2
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
68.0
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
63.7
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
63.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
62.0
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
59.9
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
56.5
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
52.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
51.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
51.2
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
49.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
47.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
45.8
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
42.8
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
42.7
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
42.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
40.2
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
39.8
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
38.9
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
38.3
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
33.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
31.5
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
30.2
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
29.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
29.1
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
28.2
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
28.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
26.0
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
22.1
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
21.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
21.7
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
21.5
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
20.3
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
18.1
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
17.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
17.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
15.9
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
15.7
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
15.3
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
14.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
13.8
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
13.0
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
12.6
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
9.8
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
9.2
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
8.8
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
8.5
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
8.4
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
8.2
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
7.1
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
7.1
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
7.0
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
6.6
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
6.1
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
5.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
5.6
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
5.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
5.3
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
4.9
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
4.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
4.0
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
3.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
3.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
3.2
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
3.1
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
3.0
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
2.9
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
2.9
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
2.8
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
2.8
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
2.7
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
2.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
2.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
2.5
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
2.4
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
1.9
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
1.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
1.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
1.7
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
1.6
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
1.5
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
1.5
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
1.2
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
1.1
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
1.1
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
1.0
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
0.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
0.9
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
0.8
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
0.7
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
0.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
0.6
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
0.6
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
0.5
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
0.4
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
0.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
0.4
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
0.3
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
0.3
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
0.3
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
0.2
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
0.2
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
0.1
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
0.1
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
0.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
0.1
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
0.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
0.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
0.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
0.0
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
62.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 62.8
Samples: 4
Max nTPM: 68.9
Min nTPM: 58.1
Sample A
Male
58.7
Sample B
Male
68.9
Sample C
Female
58.1
Sample D
Female
65.3
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.