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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPUSD4 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
8.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
26.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
22.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
21.3
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
20.3
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
20.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
19.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.9
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
17.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
16.8
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
16.5
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
16.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
15.9
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
15.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
15.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
15.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
15.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
15.5
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
15.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
15.4
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
15.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
14.6
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
14.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
14.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
14.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
14.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
14.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
13.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
13.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
13.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
13.5
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
13.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
13.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
13.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
13.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
12.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
12.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
12.7
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.6
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
12.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
12.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
12.4
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
12.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
12.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
12.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
12.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
12.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
12.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
12.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
12.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
12.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
11.9
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
11.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.8
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
11.8
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
11.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
11.6
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.6
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.5
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
11.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
11.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
11.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
11.2
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
11.2
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
11.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
11.1
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
11.1
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
10.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
10.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
10.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
10.8
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
10.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
10.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
10.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
10.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
10.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
10.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
10.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
10.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
9.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
9.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
9.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
9.8
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
9.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
9.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
9.6
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
9.5
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
9.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
9.4
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.4
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
9.3
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
9.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
9.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
9.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
9.2
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
9.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
9.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
9.1
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
9.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
9.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
9.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
9.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
9.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
9.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
9.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.9
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
8.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
8.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
8.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
8.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
8.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
8.8
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
8.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
8.7
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
8.7
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
8.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
8.7
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.7
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
8.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
8.6
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
8.5
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
8.4
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
8.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
8.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
8.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
8.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.3
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
8.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
8.2
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
8.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
8.1
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
8.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
8.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
8.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.0
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
8.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
8.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
7.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
7.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
7.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.9
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
7.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
7.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
7.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
7.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
7.8
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
7.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
7.8
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
7.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
7.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
7.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
7.6
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
7.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
7.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
7.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
7.5
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
7.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
7.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
7.4
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.4
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
7.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
7.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
7.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
7.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
7.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
7.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
7.1
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.1
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
7.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
7.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
7.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
7.0
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
7.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
7.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
6.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
6.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
6.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
6.8
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
6.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
6.8
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
6.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
6.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
6.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.6
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
6.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
6.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
6.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
6.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
6.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
6.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
6.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
6.5
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
6.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
6.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
6.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
6.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
6.4
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
6.4
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
6.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
6.4
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
6.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
6.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
6.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
6.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
6.3
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
6.3
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
6.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
6.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
6.2
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
6.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
6.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.2
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
6.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
6.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
6.0
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
6.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
6.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
6.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
6.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
6.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
5.9
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
5.9
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
5.9
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
5.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
5.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
5.6
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
5.6
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
5.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
5.6
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.6
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
5.6
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
5.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
5.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
5.6
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
5.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
5.6
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
5.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
5.5
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
5.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
5.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
5.4
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
5.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
5.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.3
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
5.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
5.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
5.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
5.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
5.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
5.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.2
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
5.1
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
5.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
5.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
5.1
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
5.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
5.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
4.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
4.9
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
4.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
4.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
4.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
4.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
4.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
4.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
4.7
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.7
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
4.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.7
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
4.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
4.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.6
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
4.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
4.6
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
4.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
4.5
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
4.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
4.4
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
4.4
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.4
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
4.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
4.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
4.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
4.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.3
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
4.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
4.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
4.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
4.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
4.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
4.0
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
3.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
3.9
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
3.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
3.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
3.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
3.7
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
3.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
3.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
3.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
3.6
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
3.6
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
3.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
3.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
3.2
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
3.2
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
3.0
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
3.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
2.9
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.8
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
2.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
2.7
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
2.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
2.4
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
2.1
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPUSD4 is validated prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
9.1
Number of samples
231
Samples
Sample
Description
TPM
DO50815
0 years, male, NA, stage:3, alive, 150 days
41.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
24.7
DO45161
0 years, male, NA, stage:2, dead, 540 days
23.0
DO45221
0 years, female, NA, stage:4, dead, 390 days
20.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
20.1
DO48730
0 years, female, NA, stage:2, alive, 630 days
18.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
18.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
17.7
DO45189
0 years, female, NA, stage:2, alive, 1200 days
17.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
16.3
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.2
DO45227
0 years, female, NA, stage:2, alive, 1020 days
15.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
15.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
14.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
14.7
DO45265
0 years, male, NA, stage:3, alive, 1020 days
14.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
14.3
DO45179
0 years, female, NA, stage:2, alive, 600 days
14.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
14.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
14.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
13.8
DO23508
0 years, female, NA, stage:2, alive, 390 days
13.8
DO45209
0 years, male, NA, stage:4, alive, 1350 days
13.5
DO45119
0 years, male, NA, stage:3, dead, 510 days
13.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
13.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
12.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.8
DO45269
0 years, male, NA, stage:3, alive, 750 days
12.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
12.8
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
12.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
12.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
11.9
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
11.6
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
11.6
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
11.5
DO45275
0 years, male, NA, stage:3, dead, 10 days
11.5
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
11.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
11.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
11.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
11.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
11.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
10.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
10.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
10.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
10.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
10.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
10.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
10.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
10.5
DO50818
0 years, male, NA, stage:2, alive, 510 days
10.5
DO23533
0 years, male, NA, stage:2, alive, 900 days
10.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
10.5
DO48732
0 years, male, NA, stage:3, alive, 630 days
10.4
DO50850
0 years, male, NA, stage:3, alive, 720 days
10.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
10.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.3
DO23528
0 years, female, NA, stage:2, alive, 1020 days
10.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
10.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
10.1
DO45175
0 years, male, NA, stage:2, alive, 1140 days
10.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
10.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.9
DO45163
0 years, male, NA, stage:2, alive, 960 days
9.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
9.8
DO50817
0 years, male, NA, stage:2, alive, 390 days
9.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
9.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.7
DO48733
0 years, male, NA, stage:2, alive, 600 days
9.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
9.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
9.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
9.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
9.5
DO48677
0 years, male, NA, stage:3, alive, 1140 days
9.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
9.3
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
9.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
9.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
9.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.9
DO50857
0 years, male, NA, stage:2, alive, 210 days
8.9
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
8.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
8.8
DO45251
0 years, female, NA, stage:2, alive, 900 days
8.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
8.8
DO48720
0 years, female, NA, stage:2, alive, 570 days
8.8
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
8.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
8.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
8.7
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
8.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.5
DO23549
0 years, male, NA, stage:3, alive, 990 days
8.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
8.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.5
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.3
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.3
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
8.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
8.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
8.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
8.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
8.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
8.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
8.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
8.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
8.0
DO45305
0 years, male, NA, stage:4, alive, 300 days
8.0
DO45139
0 years, male, NA, stage:3, alive, 1320 days
8.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
7.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
7.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.9
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
7.8
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
7.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
7.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
7.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
7.7
DO50793
0 years, male, NA, stage:4, alive, 540 days
7.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.7
DO48716
0 years, male, NA, stage:2, alive, 720 days
7.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
7.7
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.6
DO50800
0 years, male, NA, stage:2, alive, 510 days
7.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
7.6
DO45203
0 years, female, NA, stage:2, alive, 1170 days
7.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
7.5
DO23543
0 years, male, NA, stage:2, alive, 1020 days
7.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
7.5
DO45303
0 years, female, NA, stage:3, alive, 990 days
7.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
7.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.4
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
7.4
DO45101
0 years, male, NA, stage:2, alive, 1680 days
7.4
DO48712
0 years, male, NA, stage:2, alive, 810 days
7.4
DO45143
0 years, male, NA, stage:3, alive, 1290 days
7.3
DO45094
0 years, male, NA, stage:3, alive, 1650 days
7.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
7.3
DO48737
0 years, male, NA, stage:1, alive, 720 days
7.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
7.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
7.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
7.2
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
7.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
7.1
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
7.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
7.1
DO45107
0 years, female, NA, stage:2, alive, 1710 days
7.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
7.0
DO45261
0 years, male, NA, stage:3, alive, 990 days
7.0
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.0
DO45123
0 years, female, NA, stage:2, dead, 570 days
6.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
6.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
6.8
DO48697
0 years, female, NA, stage:2, dead, 810 days
6.8
DO45257
0 years, male, NA, stage:3, alive, 810 days
6.8
DO50804
0 years, male, NA, stage:2, alive, 720 days
6.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.8
DO45099
0 years, male, NA, stage:3, alive, 1590 days
6.7
DO45169
0 years, male, NA, stage:3, alive, 1350 days
6.7
DO48674
0 years, male, NA, stage:2, alive, 1260 days
6.7
DO50844
0 years, male, NA, stage:4, alive, 300 days
6.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
6.7
DO45243
0 years, female, NA, stage:3, alive, 930 days
6.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
6.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
6.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.6
DO50803
0 years, female, NA, stage:1, alive, 540 days
6.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
6.5
DO45125
0 years, male, NA, stage:3, alive, 1680 days
6.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.4
DO45137
0 years, male, NA, stage:1, alive, 1320 days
6.3
DO48747
0 years, male, NA, stage:3, alive, 540 days
6.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
6.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
6.2
DO45297
0 years, female, NA, stage:4, dead, 1260 days
6.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
6.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
6.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
6.0
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
5.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.8
DO23527
0 years, male, NA, stage:1, alive, 1050 days
5.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
5.7
DO45245
0 years, female, NA, stage:2, dead, 240 days
5.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
5.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
5.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
5.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
5.3
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
4.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
4.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
4.7
DO48721
0 years, female, NA, stage:1, alive, 900 days
4.7
DO48741
0 years, male, NA, stage:3, alive, 240 days
4.5
DO45237
0 years, male, NA, stage:2, alive, 900 days
4.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
4.2
DO45093
0 years, male, NA, stage:2, dead, 720 days
4.2
DO45111
0 years, male, NA, stage:2, alive, 1590 days
4.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
4.0
DO45115
0 years, male, NA, stage:2, alive, 840 days
3.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
3.8
DO48693
0 years, male, NA, stage:2, alive, 900 days
3.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
3.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
473
Tumor
1.3
965
Tumor
1.3
513
Tumor
1.2
537
Tumor
1.1
911
Tumor
1.0
865
Tumor
0.9
1041
Tumor
0.9
278
Normal
0.9
533
Tumor
0.8
925
Tumor
0.8
477
Tumor
0.8
1021
Tumor
0.7
435
Tumor
0.7
951
Tumor
0.7
696
Normal
0.6
913
Tumor
0.6
981
Tumor
0.6
967
Tumor
0.6
944
Normal
0.6
968
Normal
0.6
741
Tumor
0.6
535
Tumor
0.6
147
Tumor
0.6
864
Normal
0.6
938
Normal
0.6
557
Tumor
0.6
957
Tumor
0.5
863
Tumor
0.5
816
Normal
0.5
713
Tumor
0.5
393
Tumor
0.5
714
Normal
0.5
912
Normal
0.5
484
Normal
0.5
361
Tumor
0.5
518
Normal
0.5
427
Tumor
0.5
364
Normal
0.5
755
Tumor
0.4
528
Normal
0.4
525
Tumor
0.4
964
Normal
0.4
952
Normal
0.4
572
Normal
0.4
852
Normal
0.4
356
Normal
0.4
1015
Tumor
0.4
523
Tumor
0.4
728
Normal
0.4
742
Normal
0.4
664
Normal
0.4
514
Normal
0.4
462
Normal
0.4
818
Normal
0.4
851
Tumor
0.4
858
Normal
0.4
314
Normal
0.4
195
Tumor
0.4
926
Normal
0.4
391
Tumor
0.4
915
Tumor
0.3
861
Tumor
0.3
953
Tumor
0.3
267
Tumor
0.3
564
Normal
0.3
1022
Normal
0.3
756
Normal
0.3
351
Tumor
0.3
494
Normal
0.3
483
Tumor
0.3
685
Tumor
0.3
1014
Normal
0.3
956
Normal
0.3
465
Tumor
0.3
456
Normal
0.3
332
Normal
0.3
738
Normal
0.3
823
Tumor
0.3
721
Tumor
0.3
367
Tumor
0.3
866
Normal
0.3
955
Tumor
0.3
416
Normal
0.3
874
Normal
0.3
922
Normal
0.3
817
Tumor
0.3
723
Tumor
0.3
824
Normal
0.3
388
Normal
0.3
286
Normal
0.3
127
Tumor
0.3
231
Tumor
0.3
916
Normal
0.3
471
Tumor
0.3
387
Tumor
0.3
686
Normal
0.3
357
Tumor
0.3
958
Normal
0.3
671
Tumor
0.3
395
Tumor
0.3
221
Tumor
0.3
617
Tumor
0.3
355
Tumor
0.3
558
Normal
0.2
327
Tumor
0.2
786
Normal
0.2
867
Tumor
0.2
722
Normal
0.2
1045
Tumor
0.2
883
Tumor
0.2
627
Tumor
0.2
573
Tumor
0.2
785
Tumor
0.2
743
Tumor
0.2
661
Tumor
0.2
695
Tumor
0.2
132
Normal
0.2
868
Normal
0.2
142
Normal
0.2
366
Normal
0.2
1046
Normal
0.2
978
Normal
0.2
716
Normal
0.2
432
Normal
0.2
474
Normal
0.2
491
Tumor
0.2
918
Normal
0.2
422
Normal
0.2
862
Normal
0.2
482
Normal
0.2
187
Tumor
0.2
214
Normal
0.2
526
Normal
0.2
362
Normal
0.2
663
Tumor
0.2
982
Normal
0.2
171
Tumor
0.2
517
Tumor
0.2
642
Normal
0.2
145
Tumor
0.2
227
Tumor
0.2
487
Tumor
0.2
341
Tumor
0.2
778
Normal
0.2
641
Tumor
0.2
137
Tumor
0.2
662
Normal
0.2
472
Normal
0.2
1028
Normal
0.2
724
Normal
0.2
1013
Tumor
0.1
488
Normal
0.1
426
Normal
0.1
415
Tumor
0.1
414
Normal
0.1
272
Normal
0.1
914
Normal
0.1
188
Normal
0.1
285
Tumor
0.1
698
Normal
0.1
428
Normal
0.1
943
Tumor
0.1
567
Tumor
0.1
497
Tumor
0.1
363
Tumor
0.1
546
Normal
0.1
448
Normal
0.1
331
Tumor
0.1
148
Normal
0.1
128
Normal
0.1
284
Normal
0.1
328
Normal
0.1
878
Normal
0.1
963
Tumor
0.1
478
Normal
0.1
365
Tumor
0.1
466
Normal
0.1
1032
Normal
0.1
228
Normal
0.1
213
Tumor
0.1
568
Normal
0.1
162
Normal
0.1
921
Tumor
0.1
666
Normal
0.1
648
Normal
0.1
672
Normal
0.1
141
Tumor
0.1
524
Normal
0.1
746
Normal
0.1
172
Normal
0.0
534
Normal
0.0
358
Normal
0.0
412
Normal
0.0
353
Tumor
0.0
257
Tumor
0.0
1016
Normal
0.0
966
Normal
0.0
433
Tumor
0.0
185
Tumor
0.0
218
Normal
0.0
222
Normal
0.0
618
Normal
0.0
1044
Normal
0.0
977
Tumor
0.0
554
Normal
0.0
436
Normal
0.0
392
Normal
0.0
186
Normal
0.0
111
Normal
0.0
394
Normal
0.0
126
Normal
0.0
136
Normal
0.0
258
Normal
0.0
984
Normal
0.0
413
Tumor
0.0
881
Tumor
0.0
386
Normal
0.0
923
Tumor
0.0
396
Normal
0.0
424
Normal
0.0
146
Normal
0.0
616
Normal
0.0
191
Tumor
0.0
481
Tumor
0.0
745
Tumor
0.0
212
Normal
0.0
464
Normal
0.0
882
Normal
0.0
1026
Normal
0.0
138
Normal
0.0
451
Tumor
0.0
635
Tumor
0.0
615
Tumor
-0.1
262
Normal
-0.1
192
Normal
-0.1
421
Tumor
-0.1
384
Normal
-0.1
217
Tumor
-0.1
976
Normal
-0.1
463
Tumor
-0.1
571
Tumor
-0.1
277
Tumor
-0.1
574
Normal
-0.1
444
Normal
-0.1
1043
Tumor
-0.1
232
Normal
-0.1
268
Normal
-0.1
455
Tumor
-0.1
983
Tumor
-0.1
352
Normal
-0.1
376
Normal
-0.1
434
Normal
-0.1
124
Normal
-0.1
1042
Normal
-0.1
113
Tumor
-0.1
283
Tumor
-0.1
954
Normal
-0.1
411
Tumor
-0.1
312
Normal
-0.1
211
Tumor
-0.1
452
Normal
-0.1
375
Tumor
-0.1
114
Normal
-0.1
527
Tumor
-0.1
498
Normal
-0.1
468
Normal
-0.1
423
Tumor
-0.1
354
Normal
-0.1
857
Tumor
-0.1
1031
Tumor
-0.1
446
Normal
-0.1
298
Normal
-0.1
628
Normal
-0.1
224
Normal
-0.1
196
Normal
-0.2
493
Tumor
-0.2
727
Tumor
-0.2
975
Tumor
-0.2
368
Normal
-0.2
777
Tumor
-0.2
636
Normal
-0.2
461
Tumor
-0.2
563
Tumor
-0.2
342
Normal
-0.2
924
Normal
-0.2
744
Normal
-0.2
697
Tumor
-0.2
884
Normal
-0.2
311
Tumor
-0.2
647
Tumor
-0.2
553
Tumor
-0.2
135
Tumor
-0.2
492
Normal
-0.2
385
Tumor
-0.3
665
Tumor
-0.3
516
Normal
-0.3
261
Tumor
-0.3
536
Normal
-0.3
515
Tumor
-0.3
1025
Tumor
-0.3
715
Tumor
-0.3
1027
Tumor
-0.3
313
Tumor
-0.4
447
Tumor
-0.4
877
Tumor
-0.4
131
Tumor
-0.4
937
Tumor
-0.4
271
Tumor
-0.4
538
Normal
-0.4
223
Tumor
-0.4
814
Normal
-0.5
917
Tumor
-0.5
123
Tumor
-0.5
125
Tumor
-0.5
297
Tumor
-0.5
425
Tumor
-0.5
443
Tumor
-0.5
467
Tumor
-0.5
737
Tumor
-0.5
161
Tumor
-0.5
344
Normal
-0.5
112
Tumor
-0.6
873
Tumor
-0.6
431
Tumor
-0.6
445
Tumor
-0.7
815
Tumor
-0.7
343
Tumor
-0.7
813
Tumor
-0.8
383
Tumor
-0.9
545
Tumor
-1.0
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
