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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WNK2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
3.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
107.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
61.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
60.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
58.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
58.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
52.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
50.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
34.8
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
32.1
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
30.7
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
28.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
28.1
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
26.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
25.5
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
25.1
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
21.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
21.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
17.6
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
17.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
16.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
15.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
15.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
13.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
13.0
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.9
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
12.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
12.4
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
12.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
12.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.5
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
10.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.1
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
10.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
9.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
8.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
8.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
8.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
8.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
7.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
7.7
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
7.4
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
7.2
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
7.0
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.7
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
6.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
6.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
6.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
6.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
6.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
5.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
5.7
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
5.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
5.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
5.2
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
5.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
4.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
4.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
4.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
4.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
4.2
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.2
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
4.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
3.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
3.5
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
3.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
3.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
3.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
2.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
2.8
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
2.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
2.6
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
2.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
2.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
2.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
2.2
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
2.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
2.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
2.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
2.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
1.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
1.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
1.7
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
1.7
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
1.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
1.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
1.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
1.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
1.5
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
1.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
1.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
1.4
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
1.4
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
1.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
1.2
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
1.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
1.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
1.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
1.2
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
1.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
1.1
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.0
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
1.0
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
1.0
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
1.0
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
1.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
0.9
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.8
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
0.8
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.8
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.8
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.8
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
0.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
0.6
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.6
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.5
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.4
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.4
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
0.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.4
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.4
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.4
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.4
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.4
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.4
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.3
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
0.3
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.2
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
0.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.2
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
0.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.2
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
0.2
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.2
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.2
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
0.2
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.2
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.1
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
0.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
0.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.1
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.1
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
0.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.1
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
0.1
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.1
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.1
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.1
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
0.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.1
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.1
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
0.1
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
0.1
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.1
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.0
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.0
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.0
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.0
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.0
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.0
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
0.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.0
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.0
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.0
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.0
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.0
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.0
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
0.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
WNK2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
2.0
Number of samples
231
Samples
Sample
Description
TPM
DO45279
0 years, male, NA, stage:3, alive, 1290 days
62.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
40.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
37.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
33.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
33.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
22.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.3
DO45303
0 years, female, NA, stage:3, alive, 990 days
18.7
DO23515
0 years, male, NA, stage:2, alive, 1230 days
15.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
12.6
DO45205
0 years, female, NA, stage:2, dead, 90 days
10.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
9.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
7.1
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.8
DO45187
0 years, female, NA, stage:1, alive, 1260 days
6.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
5.6
DO45185
0 years, male, NA, stage:2, alive, 600 days
4.9
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
4.4
DO50799
0 years, female, NA, stage:2, alive, 540 days
4.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
4.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
4.0
DO50844
0 years, male, NA, stage:4, alive, 300 days
3.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
3.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
3.5
DO45299
0 years, female, NA, stage:1, alive, 1440 days
3.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
3.0
DO45245
0 years, female, NA, stage:2, dead, 240 days
3.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
2.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
2.8
DO50845
0 years, male, NA, stage:3, alive, 210 days
2.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
2.6
DO45231
0 years, male, NA, stage:2, alive, 930 days
2.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
2.6
DO45233
0 years, male, NA, stage:3, alive, 900 days
2.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
2.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
2.1
DO45239
0 years, male, NA, stage:2, alive, 870 days
2.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
1.8
DO48728
0 years, female, NA, stage:2, alive, 150 days
1.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.5
DO45217
0 years, female, NA, stage:3, dead, 270 days
1.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
1.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
1.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
1.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
1.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
1.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
1.2
DO23524
0 years, female, NA, stage:2, alive, 1050 days
1.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
1.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
1.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
1.1
DO45267
0 years, male, NA, stage:3, dead, 570 days
1.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
1.0
DO45257
0 years, male, NA, stage:3, alive, 810 days
1.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
1.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
1.0
DO23530
0 years, male, NA, stage:4, dead, 180 days
0.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
0.9
DO45103
0 years, male, NA, stage:3, alive, 450 days
0.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
0.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
0.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
0.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
0.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
0.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
0.7
DO48747
0 years, male, NA, stage:3, alive, 540 days
0.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
0.6
DO45095
0 years, male, NA, stage:2, alive, 1620 days
0.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.6
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.5
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
0.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.5
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.5
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.5
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.5
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.3
DO45223
0 years, male, NA, stage:4, alive, 1020 days
0.3
DO50809
0 years, male, NA, stage:3, dead, 720 days
0.3
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.3
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.3
DO50776
0 years, male, NA, stage:1, alive, 690 days
0.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.3
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.3
DO48743
0 years, female, NA, stage:2, alive, 570 days
0.3
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.2
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.2
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.2
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
0.2
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.2
DO45229
0 years, male, NA, stage:1, alive, 990 days
0.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.2
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.2
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.2
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
0.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.2
DO48720
0 years, female, NA, stage:2, alive, 570 days
0.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
0.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
0.1
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
0.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
0.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.1
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.1
DO23551
0 years, male, NA, stage:3, dead, 150 days
0.1
DO227801
0 years, female, NA, stage:1, alive, 660 days
0.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
0.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
0.1
DO48700
0 years, female, NA, stage:2, alive, 810 days
0.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.1
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
0.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
0.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
0.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
0.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.1
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.1
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.1
DO23550
0 years, male, NA, stage:1, alive, 990 days
0.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.1
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.1
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.1
DO48733
0 years, male, NA, stage:2, alive, 600 days
0.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
0.1
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
0.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.1
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.1
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
0.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.1
DO45201
0 years, male, NA, stage:1, alive, 900 days
0.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.1
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.1
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.1
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.0
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.0
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.0
DO23518
0 years, male, NA, stage:2, alive, 1320 days
0.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.0
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.0
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.0
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.0
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.0
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.0
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
0.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.0
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
0.0
DO48725
0 years, male, NA, stage:1, alive, 780 days
0.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.0
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.0
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.0
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
2.3
131
Tumor
1.7
635
Tumor
1.1
545
Tumor
1.0
573
Tumor
0.9
367
Tumor
0.9
523
Tumor
0.8
283
Tumor
0.7
1013
Tumor
0.7
297
Tumor
0.7
877
Tumor
0.6
483
Tumor
0.6
331
Tumor
0.6
285
Tumor
0.6
271
Tumor
0.6
567
Tumor
0.6
351
Tumor
0.6
967
Tumor
0.6
527
Tumor
0.6
647
Tumor
0.6
665
Tumor
0.6
363
Tumor
0.6
661
Tumor
0.6
473
Tumor
0.6
815
Tumor
0.6
881
Tumor
0.5
147
Tumor
0.5
525
Tumor
0.5
411
Tumor
0.5
393
Tumor
0.5
957
Tumor
0.5
745
Tumor
0.5
851
Tumor
0.4
975
Tumor
0.4
571
Tumor
0.4
1025
Tumor
0.4
983
Tumor
0.4
455
Tumor
0.4
963
Tumor
0.4
535
Tumor
0.4
671
Tumor
0.4
327
Tumor
0.3
813
Tumor
0.3
865
Tumor
0.3
355
Tumor
0.3
937
Tumor
0.3
515
Tumor
0.3
1021
Tumor
0.3
965
Tumor
0.3
513
Tumor
0.3
537
Tumor
0.3
533
Tumor
0.3
1043
Tumor
0.3
471
Tumor
0.3
427
Tumor
0.3
391
Tumor
0.3
341
Tumor
0.3
785
Tumor
0.3
697
Tumor
0.3
332
Normal
0.3
492
Normal
0.3
365
Tumor
0.2
958
Normal
0.2
493
Tumor
0.2
617
Tumor
0.2
278
Normal
0.2
498
Normal
0.2
385
Tumor
0.2
921
Tumor
0.2
817
Tumor
0.2
1031
Tumor
0.2
918
Normal
0.2
966
Normal
0.2
978
Normal
0.2
435
Tumor
0.2
463
Tumor
0.2
563
Tumor
0.2
127
Tumor
0.2
1045
Tumor
0.2
518
Normal
0.2
375
Tumor
0.2
922
Normal
0.2
984
Normal
0.2
695
Tumor
0.2
524
Normal
0.2
212
Normal
0.2
713
Tumor
0.2
777
Tumor
0.2
447
Tumor
0.2
981
Tumor
0.2
228
Normal
0.1
284
Normal
0.1
224
Normal
0.1
964
Normal
0.1
484
Normal
0.1
357
Tumor
0.1
328
Normal
0.1
268
Normal
0.1
857
Tumor
0.1
558
Normal
0.1
814
Normal
0.1
488
Normal
0.1
884
Normal
0.1
546
Normal
0.1
415
Tumor
0.1
1014
Normal
0.1
538
Normal
0.1
982
Normal
0.1
722
Normal
0.1
192
Normal
0.1
755
Tumor
0.1
883
Tumor
0.1
443
Tumor
0.1
1016
Normal
0.1
955
Tumor
0.1
517
Tumor
0.1
728
Normal
0.1
923
Tumor
0.1
312
Normal
0.1
478
Normal
0.1
494
Normal
0.1
951
Tumor
0.1
944
Normal
0.1
364
Normal
0.1
277
Tumor
0.1
913
Tumor
0.1
852
Normal
0.1
916
Normal
0.1
954
Normal
0.1
387
Tumor
0.1
925
Tumor
0.1
1042
Normal
0.1
217
Tumor
0.1
424
Normal
0.1
412
Normal
0.1
976
Normal
0.1
262
Normal
0.1
873
Tumor
0.0
737
Tumor
0.0
516
Normal
0.0
311
Tumor
0.0
917
Tumor
0.0
528
Normal
0.0
534
Normal
0.0
628
Normal
0.0
685
Tumor
0.0
231
Tumor
0.0
171
Tumor
0.0
924
Normal
0.0
882
Normal
0.0
353
Tumor
0.0
968
Normal
0.0
864
Normal
0.0
386
Normal
0.0
564
Normal
0.0
615
Tumor
0.0
943
Tumor
0.0
938
Normal
0.0
723
Tumor
0.0
663
Tumor
0.0
343
Tumor
0.0
361
Tumor
0.0
123
Tumor
0.0
356
Normal
0.0
858
Normal
0.0
1027
Tumor
0.0
431
Tumor
0.0
461
Tumor
0.0
223
Tumor
0.0
862
Normal
0.0
298
Normal
0.0
137
Tumor
0.0
572
Normal
0.0
413
Tumor
0.0
536
Normal
0.0
187
Tumor
0.0
344
Normal
0.0
641
Tumor
0.0
696
Normal
0.0
716
Normal
0.0
286
Normal
0.0
474
Normal
0.0
756
Normal
0.0
574
Normal
0.0
416
Normal
0.0
213
Tumor
0.0
557
Tumor
0.0
952
Normal
0.0
112
Tumor
0.0
861
Tumor
0.0
211
Tumor
0.0
185
Tumor
0.0
477
Tumor
0.0
314
Normal
0.0
472
Normal
0.0
956
Normal
0.0
358
Normal
0.0
354
Normal
0.0
778
Normal
0.0
874
Normal
0.0
742
Normal
0.0
714
Normal
0.0
221
Tumor
0.0
1032
Normal
0.0
866
Normal
0.0
686
Normal
0.0
926
Normal
0.0
342
Normal
-0.1
554
Normal
-0.1
272
Normal
-0.1
232
Normal
-0.1
188
Normal
-0.1
142
Normal
-0.1
313
Tumor
-0.1
141
Tumor
-0.1
138
Normal
-0.1
618
Normal
-0.1
195
Tumor
-0.1
396
Normal
-0.1
1022
Normal
-0.1
448
Normal
-0.1
568
Normal
-0.1
1015
Tumor
-0.1
162
Normal
-0.1
514
Normal
-0.1
744
Normal
-0.1
126
Normal
-0.1
816
Normal
-0.1
462
Normal
-0.1
128
Normal
-0.1
267
Tumor
-0.1
434
Normal
-0.1
738
Normal
-0.1
136
Normal
-0.1
526
Normal
-0.1
227
Tumor
-0.1
146
Normal
-0.1
111
Normal
-0.1
258
Normal
-0.1
912
Normal
-0.1
481
Tumor
-0.1
824
Normal
-0.1
818
Normal
-0.1
125
Tumor
-0.1
135
Tumor
-0.1
1046
Normal
-0.1
482
Normal
-0.1
664
Normal
-0.1
1026
Normal
-0.1
132
Normal
-0.1
161
Tumor
-0.1
823
Tumor
-0.1
786
Normal
-0.1
362
Normal
-0.1
616
Normal
-0.1
915
Tumor
-0.1
914
Normal
-0.1
352
Normal
-0.1
186
Normal
-0.2
145
Tumor
-0.2
428
Normal
-0.2
172
Normal
-0.2
388
Normal
-0.2
444
Normal
-0.2
148
Normal
-0.2
465
Tumor
-0.2
392
Normal
-0.2
124
Normal
-0.2
666
Normal
-0.2
698
Normal
-0.2
366
Normal
-0.2
746
Normal
-0.2
636
Normal
-0.2
196
Normal
-0.2
487
Tumor
-0.2
911
Tumor
-0.2
662
Normal
-0.2
433
Tumor
-0.2
425
Tumor
-0.2
383
Tumor
-0.2
1044
Normal
-0.2
426
Normal
-0.2
456
Normal
-0.2
648
Normal
-0.2
113
Tumor
-0.2
878
Normal
-0.2
218
Normal
-0.2
868
Normal
-0.2
222
Normal
-0.2
368
Normal
-0.2
394
Normal
-0.2
642
Normal
-0.2
867
Tumor
-0.2
497
Tumor
-0.2
977
Tumor
-0.2
445
Tumor
-0.2
214
Normal
-0.2
672
Normal
-0.3
257
Tumor
-0.3
421
Tumor
-0.3
432
Normal
-0.3
114
Normal
-0.3
715
Tumor
-0.3
414
Normal
-0.3
436
Normal
-0.3
261
Tumor
-0.3
464
Normal
-0.3
863
Tumor
-0.3
384
Normal
-0.3
191
Tumor
-0.3
1028
Normal
-0.3
422
Normal
-0.3
491
Tumor
-0.3
727
Tumor
-0.3
741
Tumor
-0.3
721
Tumor
-0.3
423
Tumor
-0.3
376
Normal
-0.4
467
Tumor
-0.4
953
Tumor
-0.4
468
Normal
-0.4
466
Normal
-0.4
553
Tumor
-0.4
627
Tumor
-0.4
1041
Tumor
-0.4
395
Tumor
-0.4
724
Normal
-0.4
452
Normal
-0.5
451
Tumor
-0.5
446
Normal
-0.6
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
