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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FBP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
185.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
1330.5
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
1100.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
1044.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
946.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
942.4
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
877.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
861.7
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
854.7
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
854.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
784.6
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
742.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
701.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
692.3
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
683.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
682.8
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
645.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
615.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
613.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
576.9
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
558.9
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
554.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
537.9
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
534.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
522.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
519.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
515.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
511.5
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
502.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
497.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
497.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
497.4
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
476.3
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
474.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
451.8
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
448.8
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
430.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
429.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
419.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
419.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
415.0
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
412.9
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
403.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
401.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
397.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
394.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
385.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
381.3
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
375.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
374.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
363.8
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
355.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
352.4
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
350.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
346.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
335.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
335.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
334.8
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
330.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
328.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
323.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
320.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
317.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
314.0
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
311.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
309.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
305.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
301.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
297.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
295.9
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
295.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
291.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
288.6
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
288.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
283.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
281.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
280.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
268.6
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
263.9
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
262.2
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
258.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
257.3
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
256.4
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
255.7
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
250.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
249.0
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
248.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
246.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
232.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
231.7
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
227.0
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
224.9
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
223.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
219.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
217.7
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
216.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
215.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
215.4
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
213.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
212.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
211.1
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
207.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
207.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
205.6
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
204.1
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
203.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
202.9
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
201.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
199.8
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
199.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
197.6
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
197.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
196.8
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
196.1
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
193.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
190.6
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
188.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
188.3
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
187.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
187.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
185.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
185.0
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
184.4
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
183.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
183.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
183.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
182.1
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
181.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
181.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
179.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
179.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
178.4
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
176.6
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
176.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
173.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
172.4
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
164.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
163.4
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
163.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
163.1
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
162.2
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
160.4
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
159.3
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
158.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
158.7
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
158.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
155.2
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
152.4
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
151.6
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
151.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
150.1
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
150.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
149.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
148.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
146.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
146.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
145.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
145.2
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
143.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
142.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
141.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
139.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
139.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
138.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
138.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
137.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
137.4
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
136.3
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
136.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
136.0
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
135.2
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
135.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
134.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
132.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
130.5
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
130.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
128.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
128.3
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
124.5
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
124.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
121.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
121.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
119.8
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
119.3
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
118.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
117.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
116.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
115.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
114.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
112.8
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
112.6
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
109.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
109.8
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
109.7
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
108.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
108.0
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
107.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
107.8
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
106.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
106.4
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
106.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
106.4
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
106.4
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
106.3
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
105.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
104.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
101.7
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
101.5
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
100.8
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
100.7
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
100.4
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
98.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
98.7
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
98.4
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
97.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
94.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
92.6
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
92.1
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
91.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
91.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
90.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
90.1
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
89.6
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
89.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
88.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
86.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
86.6
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
85.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
84.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
83.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
83.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
83.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
82.2
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
81.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
81.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
81.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
80.9
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
80.6
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
80.6
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
80.3
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
78.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
78.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
78.0
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
77.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
76.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
76.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
75.4
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
74.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
73.6
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
73.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
73.4
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
73.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
71.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
71.7
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
71.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
71.6
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
70.9
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
70.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
70.3
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
69.7
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
69.1
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
67.6
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
67.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
66.3
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
66.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
65.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
65.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
65.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
65.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
62.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
60.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
60.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
59.4
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
57.6
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
56.8
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
56.3
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
56.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
54.8
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
53.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
52.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
51.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
51.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
51.5
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
51.2
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
51.2
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
51.1
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
50.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
48.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
48.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
47.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
46.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
45.9
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
44.8
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
42.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
41.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
40.4
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
40.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
40.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
38.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
38.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
37.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
37.5
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
37.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
36.9
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
35.7
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
35.4
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
35.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
31.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
30.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
29.7
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
29.7
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
29.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
29.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
28.8
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
28.5
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
28.1
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
26.9
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
26.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
24.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
24.7
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
24.1
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
22.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
22.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
21.9
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
21.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
21.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
21.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
20.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
20.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
19.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
18.5
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
16.6
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
15.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
13.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
12.8
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
12.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
11.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
11.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
10.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
9.8
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
8.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
7.7
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
7.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
7.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
7.2
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
6.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
5.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
4.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
3.9
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
3.4
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
3.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
1.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
FBP1 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
144.2
Number of samples
231
Samples
Sample
Description
TPM
DO48674
0 years, male, NA, stage:2, alive, 1260 days
1196.3
DO45107
0 years, female, NA, stage:2, alive, 1710 days
758.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
666.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
625.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
557.8
DO45167
0 years, male, NA, stage:2, dead, 1440 days
554.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
551.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
549.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
523.6
DO45101
0 years, male, NA, stage:2, alive, 1680 days
517.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
508.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
486.6
DO50819
0 years, female, NA, stage:2, alive, 510 days
478.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
446.8
DO23550
0 years, male, NA, stage:1, alive, 990 days
440.9
DO45105
0 years, male, NA, stage:1, alive, 1680 days
418.1
DO23545
0 years, male, NA, stage:2, dead, 570 days
399.4
DO23531
0 years, female, NA, stage:3, alive, 900 days
386.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
384.2
DO45197
0 years, male, NA, stage:2, alive, 1170 days
380.1
DO45094
0 years, male, NA, stage:3, alive, 1650 days
376.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
373.7
DO45125
0 years, male, NA, stage:3, alive, 1680 days
356.0
DO23532
0 years, female, NA, stage:1, alive, 960 days
350.9
DO45149
0 years, female, NA, stage:2, alive, 1260 days
350.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
343.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
341.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
332.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
331.0
DO50789
0 years, female, NA, stage:2, alive, 570 days
330.8
DO45261
0 years, male, NA, stage:3, alive, 990 days
327.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
325.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
321.7
DO45215
0 years, male, NA, stage:2, alive, 1170 days
298.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
295.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
289.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
286.6
DO23509
0 years, male, NA, stage:3, dead, 780 days
263.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
244.8
DO45123
0 years, female, NA, stage:2, dead, 570 days
243.2
DO50817
0 years, male, NA, stage:2, alive, 390 days
242.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
236.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
235.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
227.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
215.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
215.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
211.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
211.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
209.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
197.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
186.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
183.9
DO50855
0 years, male, NA, stage:2, alive, 570 days
182.5
DO45157
0 years, male, NA, stage:2, alive, 1980 days
181.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
177.7
DO48742
0 years, male, NA, stage:2, alive, 600 days
177.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
176.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
175.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
173.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
172.3
DO50818
0 years, male, NA, stage:2, alive, 510 days
171.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
169.7
DO50791
0 years, female, NA, stage:1, dead, 480 days
169.5
DO45153
0 years, female, NA, stage:2, alive, 1380 days
166.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
166.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
163.7
DO23538
0 years, male, NA, stage:2, alive, 450 days
160.3
DO45187
0 years, female, NA, stage:1, alive, 1260 days
157.2
DO48727
0 years, female, NA, stage:2, dead, 390 days
156.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
156.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
155.6
DO50840
0 years, male, NA, stage:2, alive, 330 days
152.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
150.9
DO48725
0 years, male, NA, stage:1, alive, 780 days
149.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
146.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
144.0
DO23543
0 years, male, NA, stage:2, alive, 1020 days
144.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
143.8
DO50839
0 years, female, NA, stage:3, alive, 330 days
142.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
140.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
137.9
DO23524
0 years, female, NA, stage:2, alive, 1050 days
137.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
136.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
136.8
DO23546
0 years, male, NA, stage:2, alive, 1050 days
135.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
134.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
131.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
130.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
129.7
DO45191
0 years, female, NA, stage:2, alive, 1200 days
129.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
129.6
DO45115
0 years, male, NA, stage:2, alive, 840 days
129.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
127.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
125.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
123.6
DO45119
0 years, male, NA, stage:3, dead, 510 days
123.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
119.9
DO45223
0 years, male, NA, stage:4, alive, 1020 days
118.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
118.7
DO50798
0 years, male, NA, stage:3, dead, 30 days
114.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
114.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
112.7
DO50787
0 years, male, NA, stage:3, alive, 480 days
106.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
105.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
98.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
98.3
DO50805
0 years, male, NA, stage:2, alive, 690 days
98.0
DO23540
0 years, male, NA, stage:1, alive, 750 days
96.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
95.8
DO48700
0 years, female, NA, stage:2, alive, 810 days
95.6
DO45179
0 years, female, NA, stage:2, alive, 600 days
94.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
93.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
93.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
93.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
92.3
DO48746
0 years, male, NA, stage:3, alive, 570 days
91.8
DO50857
0 years, male, NA, stage:2, alive, 210 days
91.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
91.6
DO45241
0 years, male, NA, stage:1, alive, 1080 days
91.3
DO23533
0 years, male, NA, stage:2, alive, 900 days
88.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
83.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
83.4
DO45227
0 years, female, NA, stage:2, alive, 1020 days
82.9
DO45129
0 years, male, NA, stage:3, alive, 1470 days
77.9
DO50793
0 years, male, NA, stage:4, alive, 540 days
77.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
77.0
DO45217
0 years, female, NA, stage:3, dead, 270 days
76.9
DO45281
0 years, male, NA, stage:4, alive, 750 days
75.4
DO50814
0 years, male, NA, stage:3, alive, 420 days
73.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
70.7
DO45251
0 years, female, NA, stage:2, alive, 900 days
69.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
69.4
DO45173
0 years, male, NA, stage:3, alive, 1170 days
67.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
66.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
66.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
66.2
DO45131
0 years, male, NA, stage:4, dead, 360 days
66.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
65.4
DO48757
0 years, female, NA, stage:3, alive, 480 days
64.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
63.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
62.4
DO45299
0 years, female, NA, stage:1, alive, 1440 days
62.2
DO48697
0 years, female, NA, stage:2, dead, 810 days
61.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
59.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
58.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
57.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
56.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
55.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
55.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
55.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
54.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
54.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
54.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
54.1
DO50811
0 years, male, NA, stage:1, alive, 450 days
53.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
52.6
DO45137
0 years, male, NA, stage:1, alive, 1320 days
51.2
DO45225
0 years, male, NA, stage:1, alive, 1050 days
51.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
50.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
50.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
50.5
DO45245
0 years, female, NA, stage:2, dead, 240 days
49.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
49.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
49.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
48.9
DO48747
0 years, male, NA, stage:3, alive, 540 days
48.7
DO48679
0 years, male, NA, stage:2, alive, 1200 days
47.5
DO45169
0 years, male, NA, stage:3, alive, 1350 days
46.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
46.6
DO50816
0 years, male, NA, stage:2, alive, 390 days
45.9
DO48736
0 years, female, NA, stage:1, alive, 600 days
44.0
DO50802
0 years, male, NA, stage:2, alive, 930 days
43.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
43.3
DO45175
0 years, male, NA, stage:2, alive, 1140 days
41.7
DO45285
0 years, male, NA, stage:3, alive, 480 days
41.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
41.0
DO45163
0 years, male, NA, stage:2, alive, 960 days
40.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
39.3
DO45239
0 years, male, NA, stage:2, alive, 870 days
38.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
38.1
DO50799
0 years, female, NA, stage:2, alive, 540 days
38.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
37.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
36.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
36.3
DO45159
0 years, male, NA, stage:3, alive, 1470 days
35.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
34.2
DO23510
0 years, female, NA, stage:2, alive, 870 days
34.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
33.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
33.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
33.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
32.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
32.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
31.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
31.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
31.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
30.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
30.0
DO45097
0 years, male, NA, stage:3, alive, 1620 days
29.6
DO45275
0 years, male, NA, stage:3, dead, 10 days
27.1
DO48720
0 years, female, NA, stage:2, alive, 570 days
26.6
DO45267
0 years, male, NA, stage:3, dead, 570 days
26.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
25.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
24.6
DO48732
0 years, male, NA, stage:3, alive, 630 days
23.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
21.8
DO23519
0 years, male, NA, stage:3, alive, 630 days
21.7
DO48681
0 years, male, NA, stage:2, alive, 900 days
20.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
19.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
19.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
18.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
16.9
DO45199
0 years, female, NA, stage:2, alive, 1350 days
15.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
12.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.3
DO45259
0 years, male, NA, stage:3, alive, 330 days
12.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
10.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
10.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
9.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
9.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
7.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
6.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
6.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
6.2
DO23549
0 years, male, NA, stage:3, alive, 990 days
6.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
5.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
4.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
4.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
3.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
3.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
2.7
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
924
Normal
1.1
723
Tumor
1.0
327
Tumor
1.0
756
Normal
0.9
786
Normal
0.8
738
Normal
0.8
914
Normal
0.8
462
Normal
0.8
528
Normal
0.8
728
Normal
0.8
1026
Normal
0.8
818
Normal
0.8
416
Normal
0.8
446
Normal
0.8
628
Normal
0.8
912
Normal
0.8
824
Normal
0.8
742
Normal
0.8
1022
Normal
0.7
518
Normal
0.7
698
Normal
0.7
746
Normal
0.7
618
Normal
0.7
862
Normal
0.7
1046
Normal
0.7
778
Normal
0.7
984
Normal
0.7
426
Normal
0.7
472
Normal
0.7
424
Normal
0.7
414
Normal
0.7
328
Normal
0.7
128
Normal
0.7
513
Tumor
0.7
952
Normal
0.7
464
Normal
0.7
864
Normal
0.7
436
Normal
0.7
982
Normal
0.7
1044
Normal
0.7
858
Normal
0.7
956
Normal
0.6
636
Normal
0.6
358
Normal
0.6
978
Normal
0.6
745
Tumor
0.6
648
Normal
0.6
882
Normal
0.6
214
Normal
0.6
884
Normal
0.6
314
Normal
0.6
456
Normal
0.6
111
Normal
0.6
716
Normal
0.6
484
Normal
0.6
918
Normal
0.6
412
Normal
0.6
162
Normal
0.6
968
Normal
0.6
428
Normal
0.6
1016
Normal
0.6
922
Normal
0.6
1042
Normal
0.6
258
Normal
0.6
488
Normal
0.6
448
Normal
0.6
868
Normal
0.6
481
Tumor
0.6
386
Normal
0.6
482
Normal
0.6
298
Normal
0.6
926
Normal
0.6
866
Normal
0.6
222
Normal
0.6
564
Normal
0.6
664
Normal
0.6
356
Normal
0.5
616
Normal
0.5
714
Normal
0.5
394
Normal
0.5
722
Normal
0.5
816
Normal
0.5
466
Normal
0.5
342
Normal
0.5
874
Normal
0.5
186
Normal
0.5
312
Normal
0.5
546
Normal
0.5
938
Normal
0.5
964
Normal
0.5
136
Normal
0.5
286
Normal
0.5
1032
Normal
0.5
666
Normal
0.5
526
Normal
0.5
364
Normal
0.5
465
Tumor
0.5
916
Normal
0.5
976
Normal
0.5
218
Normal
0.5
944
Normal
0.5
568
Normal
0.5
514
Normal
0.5
1014
Normal
0.5
172
Normal
0.4
366
Normal
0.4
558
Normal
0.4
432
Normal
0.4
132
Normal
0.4
966
Normal
0.4
278
Normal
0.4
212
Normal
0.4
534
Normal
0.4
362
Normal
0.4
196
Normal
0.4
228
Normal
0.4
396
Normal
0.4
958
Normal
0.4
146
Normal
0.4
695
Tumor
0.4
344
Normal
0.4
494
Normal
0.4
474
Normal
0.4
188
Normal
0.4
516
Normal
0.3
852
Normal
0.3
953
Tumor
0.3
642
Normal
0.3
572
Normal
0.3
272
Normal
0.3
138
Normal
0.3
878
Normal
0.3
376
Normal
0.3
686
Normal
0.3
114
Normal
0.3
785
Tumor
0.3
981
Tumor
0.3
148
Normal
0.3
422
Normal
0.3
955
Tumor
0.3
388
Normal
0.3
354
Normal
0.3
662
Normal
0.3
452
Normal
0.3
368
Normal
0.3
352
Normal
0.3
332
Normal
0.3
672
Normal
0.3
232
Normal
0.3
147
Tumor
0.3
126
Normal
0.3
262
Normal
0.3
1028
Normal
0.2
284
Normal
0.2
468
Normal
0.2
696
Normal
0.2
142
Normal
0.2
392
Normal
0.1
744
Normal
0.1
434
Normal
0.1
574
Normal
0.1
554
Normal
0.1
515
Tumor
0.1
365
Tumor
0.1
145
Tumor
0.0
411
Tumor
0.0
124
Normal
0.0
851
Tumor
0.0
224
Normal
0.0
1013
Tumor
0.0
954
Normal
-0.1
384
Normal
-0.1
1045
Tumor
-0.1
615
Tumor
-0.1
873
Tumor
-0.1
393
Tumor
-0.1
357
Tumor
-0.1
777
Tumor
-0.2
627
Tumor
-0.2
755
Tumor
-0.2
538
Normal
-0.2
478
Normal
-0.2
268
Normal
-0.2
227
Tumor
-0.2
192
Normal
-0.3
1043
Tumor
-0.3
415
Tumor
-0.3
857
Tumor
-0.3
217
Tumor
-0.3
361
Tumor
-0.3
435
Tumor
-0.3
524
Normal
-0.4
498
Normal
-0.4
727
Tumor
-0.4
617
Tumor
-0.4
445
Tumor
-0.4
536
Normal
-0.4
461
Tumor
-0.4
313
Tumor
-0.5
444
Normal
-0.5
483
Tumor
-0.5
492
Normal
-0.5
1027
Tumor
-0.6
921
Tumor
-0.6
713
Tumor
-0.6
423
Tumor
-0.6
141
Tumor
-0.6
341
Tumor
-0.6
161
Tumor
-0.6
523
Tumor
-0.7
353
Tumor
-0.7
915
Tumor
-0.7
137
Tumor
-0.7
127
Tumor
-0.7
257
Tumor
-0.7
1031
Tumor
-0.8
721
Tumor
-0.8
867
Tumor
-0.8
917
Tumor
-0.8
195
Tumor
-0.8
957
Tumor
-0.9
863
Tumor
-0.9
355
Tumor
-0.9
191
Tumor
-0.9
737
Tumor
-0.9
113
Tumor
-0.9
1025
Tumor
-0.9
963
Tumor
-1.0
823
Tumor
-1.0
112
Tumor
-1.0
967
Tumor
-1.0
517
Tumor
-1.0
421
Tumor
-1.0
537
Tumor
-1.0
477
Tumor
-1.0
814
Normal
-1.1
533
Tumor
-1.1
447
Tumor
-1.1
431
Tumor
-1.1
433
Tumor
-1.1
185
Tumor
-1.1
213
Tumor
-1.1
571
Tumor
-1.1
563
Tumor
-1.2
913
Tumor
-1.2
883
Tumor
-1.2
261
Tumor
-1.2
937
Tumor
-1.2
187
Tumor
-1.2
493
Tumor
-1.2
975
Tumor
-1.2
553
Tumor
-1.2
943
Tumor
-1.2
131
Tumor
-1.2
491
Tumor
-1.3
277
Tumor
-1.3
271
Tumor
-1.3
363
Tumor
-1.3
923
Tumor
-1.3
1015
Tumor
-1.4
881
Tumor
-1.4
641
Tumor
-1.4
171
Tumor
-1.4
977
Tumor
-1.4
741
Tumor
-1.4
125
Tumor
-1.4
375
Tumor
-1.4
813
Tumor
-1.4
427
Tumor
-1.4
487
Tumor
-1.5
455
Tumor
-1.5
545
Tumor
-1.5
697
Tumor
-1.5
267
Tumor
-1.5
557
Tumor
-1.5
567
Tumor
-1.5
861
Tumor
-1.5
467
Tumor
-1.5
221
Tumor
-1.6
911
Tumor
-1.6
471
Tumor
-1.6
391
Tumor
-1.6
647
Tumor
-1.6
951
Tumor
-1.6
463
Tumor
-1.6
383
Tumor
-1.7
297
Tumor
-1.7
223
Tumor
-1.7
1041
Tumor
-1.7
983
Tumor
-1.7
663
Tumor
-1.7
311
Tumor
-1.8
817
Tumor
-1.8
865
Tumor
-1.8
925
Tumor
-1.8
525
Tumor
-1.9
135
Tumor
-1.9
443
Tumor
-1.9
343
Tumor
-1.9
877
Tumor
-2.0
451
Tumor
-2.0
743
Tumor
-2.0
665
Tumor
-2.0
815
Tumor
-2.0
395
Tumor
-2.0
331
Tumor
-2.0
413
Tumor
-2.0
387
Tumor
-2.0
283
Tumor
-2.0
1021
Tumor
-2.1
123
Tumor
-2.1
367
Tumor
-2.1
285
Tumor
-2.2
425
Tumor
-2.2
527
Tumor
-2.2
351
Tumor
-2.2
473
Tumor
-2.3
211
Tumor
-2.3
497
Tumor
-2.3
671
Tumor
-2.3
715
Tumor
-2.3
573
Tumor
-2.3
635
Tumor
-2.3
724
Normal
-2.4
685
Tumor
-2.4
385
Tumor
-2.4
231
Tumor
-2.5
661
Tumor
-2.5
535
Tumor
-2.5
965
Tumor
-2.5
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.