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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
7.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
7.0
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
5.8
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.3
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
4.8
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
3.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
3.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
3.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
3.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
2.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
2.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
2.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.4
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
2.4
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2.4
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
2.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
2.2
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
2.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
2.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.1
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
2.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
2.0
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.9
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
1.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
1.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
1.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
1.5
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
1.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.4
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
1.3
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
1.3
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
1.3
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
1.3
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
1.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
1.3
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
1.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
1.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
1.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
1.2
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
1.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
1.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
1.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
1.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
1.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.2
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
1.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
1.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
1.1
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
1.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
1.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
1.0
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
1.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
1.0
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
1.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.9
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
0.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
0.9
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.9
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
0.8
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.8
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.8
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
0.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
0.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
0.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
0.8
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
0.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
0.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
0.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
0.7
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
0.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
0.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
0.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
0.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.6
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
0.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
0.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
0.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
0.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
0.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
0.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
0.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.6
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
0.6
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
0.6
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
0.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
0.6
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
0.6
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
0.6
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.6
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
0.6
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
0.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
0.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
0.5
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
0.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
0.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
0.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
0.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
0.5
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.5
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
0.4
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
0.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
0.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
0.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
0.4
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
0.4
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
0.4
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
0.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
0.4
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
0.4
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
0.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
0.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.3
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
0.3
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
0.3
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
0.3
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.3
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
0.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
0.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
0.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.3
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
0.3
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
0.3
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
0.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.3
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
0.3
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
0.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
0.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
0.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
0.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
0.3
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
0.3
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
0.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
0.3
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
0.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
0.3
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
0.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.3
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
0.2
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
0.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.2
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
0.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.2
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
0.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
0.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
0.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
0.2
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.2
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
0.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
0.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
0.2
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
0.2
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
0.2
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
0.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.2
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
0.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
0.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
0.2
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
0.2
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
0.2
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
0.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
0.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
0.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
0.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
0.2
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
0.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
0.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
0.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
0.1
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
0.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
0.1
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
0.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
0.1
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
0.1
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
0.1
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.1
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
0.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
0.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
0.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
0.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
0.1
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
0.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.1
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
0.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
0.1
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
0.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
0.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.1
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
0.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
0.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
0.1
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
0.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
0.1
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
0.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
0.1
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
0.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
0.1
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
0.1
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
0.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
0.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.1
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.1
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
0.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.1
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
0.1
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
0.1
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
0.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
0.1
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
0.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
0.1
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.1
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
0.1
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
0.1
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
0.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
0.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.1
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
0.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
0.1
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
0.1
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.1
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
0.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
0.1
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
0.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
0.1
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
0.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
0.1
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
0.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
0.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.1
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
0.1
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
0.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
0.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
0.0
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
0.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
0.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
0.0
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
0.0
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
0.0
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
0.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
0.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.0
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
0.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.0
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
0.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
0.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
0.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
0.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
0.0
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
0.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
0.0
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
0.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.0
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
0.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
0.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
0.0
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
0.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
0.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
0.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
0.0
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
0.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
0.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
0.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
0.0
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
0.0
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
0.0
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
0.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
0.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
0.0
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
0.0
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
0.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
0.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
0.0
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.0
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
0.0
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
0.0
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.0
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
0.0
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
0.0
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
0.0
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.0
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
0.8
Number of samples
231
Samples
Sample
Description
TPM
DO23530
0 years, male, NA, stage:4, dead, 180 days
10.8
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.3
DO45155
0 years, male, NA, stage:2, alive, 2160 days
6.3
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.8
DO45177
0 years, female, NA, stage:3, alive, 1260 days
5.1
DO23523
0 years, male, NA, stage:3, alive, 1080 days
4.9
DO48743
0 years, female, NA, stage:2, alive, 570 days
4.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
3.5
DO48733
0 years, male, NA, stage:2, alive, 600 days
3.1
DO45109
0 years, male, NA, stage:2, alive, 1590 days
3.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
3.0
DO45279
0 years, male, NA, stage:3, alive, 1290 days
2.8
DO45141
0 years, male, NA, stage:2, alive, 1320 days
2.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
2.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
2.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
2.7
DO23531
0 years, female, NA, stage:3, alive, 900 days
2.6
DO48720
0 years, female, NA, stage:2, alive, 570 days
2.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
2.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
2.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
2.5
DO45181
0 years, female, NA, stage:2, alive, 1200 days
2.4
DO45139
0 years, male, NA, stage:3, alive, 1320 days
2.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
2.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
2.4
DO23535
0 years, male, NA, stage:1, alive, 960 days
2.2
DO45207
0 years, male, NA, stage:1, alive, 1050 days
2.2
DO45095
0 years, male, NA, stage:2, alive, 1620 days
2.2
DO45137
0 years, male, NA, stage:1, alive, 1320 days
1.9
DO50776
0 years, male, NA, stage:1, alive, 690 days
1.9
DO45307
0 years, female, NA, stage:4, dead, 240 days
1.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
1.8
DO48736
0 years, female, NA, stage:1, alive, 600 days
1.7
DO50803
0 years, female, NA, stage:1, alive, 540 days
1.7
DO45231
0 years, male, NA, stage:2, alive, 930 days
1.7
DO45283
0 years, male, NA, stage:3, alive, 510 days
1.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
1.6
DO45251
0 years, female, NA, stage:2, alive, 900 days
1.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
1.5
DO48742
0 years, male, NA, stage:2, alive, 600 days
1.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
1.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
1.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
1.4
DO23547
0 years, male, NA, stage:1, alive, 1020 days
1.4
DO45213
0 years, male, NA, stage:1, alive, 1200 days
1.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
1.3
DO45243
0 years, female, NA, stage:3, alive, 930 days
1.3
DO45285
0 years, male, NA, stage:3, alive, 480 days
1.3
DO45249
0 years, male, NA, stage:1, alive, 630 days
1.2
DO50778
0 years, male, NA, stage:4, alive, 630 days
1.2
DO48728
0 years, female, NA, stage:2, alive, 150 days
1.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
1.2
DO45253
0 years, male, NA, stage:2, alive, 870 days
1.2
DO23518
0 years, male, NA, stage:2, alive, 1320 days
1.2
DO48679
0 years, male, NA, stage:2, alive, 1200 days
1.2
DO50855
0 years, male, NA, stage:2, alive, 570 days
1.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
1.1
DO45225
0 years, male, NA, stage:1, alive, 1050 days
1.1
DO50809
0 years, male, NA, stage:3, dead, 720 days
1.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
1.0
DO48747
0 years, male, NA, stage:3, alive, 540 days
1.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
1.0
DO23515
0 years, male, NA, stage:2, alive, 1230 days
1.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
1.0
DO45235
0 years, female, NA, stage:1, alive, 900 days
1.0
DO48759
0 years, male, NA, stage:3, alive, 720 days
1.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.0
DO50800
0 years, male, NA, stage:2, alive, 510 days
1.0
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.9
DO45241
0 years, male, NA, stage:1, alive, 1080 days
0.9
DO23541
0 years, male, NA, stage:2, alive, 930 days
0.9
DO48693
0 years, male, NA, stage:2, alive, 900 days
0.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
0.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
0.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
0.8
DO45301
0 years, male, NA, stage:2, dead, 1440 days
0.8
DO48717
0 years, male, NA, stage:4, dead, 180 days
0.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
0.8
DO50850
0 years, male, NA, stage:3, alive, 720 days
0.8
DO45263
0 years, male, NA, stage:3, dead, 270 days
0.8
DO23510
0 years, female, NA, stage:2, alive, 870 days
0.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
0.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
0.7
DO48760
0 years, female, NA, stage:2, alive, 690 days
0.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
0.7
DO45305
0 years, male, NA, stage:4, alive, 300 days
0.7
DO45303
0 years, female, NA, stage:3, alive, 990 days
0.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
0.7
DO48701
0 years, male, NA, stage:2, alive, 780 days
0.7
DO50839
0 years, female, NA, stage:3, alive, 330 days
0.7
DO23526
0 years, male, NA, stage:3, alive, 1050 days
0.7
DO45297
0 years, female, NA, stage:4, dead, 1260 days
0.7
DO45203
0 years, female, NA, stage:2, alive, 1170 days
0.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
0.6
DO48674
0 years, male, NA, stage:2, alive, 1260 days
0.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
0.6
DO45281
0 years, male, NA, stage:4, alive, 750 days
0.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
0.6
DO45099
0 years, male, NA, stage:3, alive, 1590 days
0.6
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.5
DO23512
0 years, male, NA, stage:1, alive, 1260 days
0.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
0.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
0.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
0.5
DO23538
0 years, male, NA, stage:2, alive, 450 days
0.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
0.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
0.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
0.4
DO50829
0 years, male, NA, stage:3, alive, 570 days
0.4
DO50808
0 years, male, NA, stage:2, alive, 570 days
0.4
DO45195
0 years, male, NA, stage:1, alive, 390 days
0.4
DO23528
0 years, female, NA, stage:2, alive, 1020 days
0.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
0.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
0.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
0.4
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
0.4
DO45219
0 years, male, NA, stage:2, alive, 1080 days
0.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
0.4
DO45193
0 years, female, NA, stage:4, dead, 120 days
0.3
DO45096
0 years, male, NA, stage:2, dead, 1290 days
0.3
DO23524
0 years, female, NA, stage:2, alive, 1050 days
0.3
DO48716
0 years, male, NA, stage:2, alive, 720 days
0.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
0.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
0.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
0.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
0.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
0.3
DO23544
0 years, male, NA, stage:2, alive, 960 days
0.3
DO23545
0 years, male, NA, stage:2, dead, 570 days
0.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
0.3
DO45119
0 years, male, NA, stage:3, dead, 510 days
0.3
DO50791
0 years, female, NA, stage:1, dead, 480 days
0.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
0.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
0.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
0.3
DO45261
0 years, male, NA, stage:3, alive, 990 days
0.2
DO45092
0 years, male, NA, stage:4, dead, 1200 days
0.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
0.2
DO45191
0 years, female, NA, stage:2, alive, 1200 days
0.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
0.2
DO45299
0 years, female, NA, stage:1, alive, 1440 days
0.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.2
DO23536
0 years, male, NA, stage:2, alive, 930 days
0.2
DO48730
0 years, female, NA, stage:2, alive, 630 days
0.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
0.2
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
0.2
DO45257
0 years, male, NA, stage:3, alive, 810 days
0.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
0.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.2
DO50819
0 years, female, NA, stage:2, alive, 510 days
0.2
DO23539
0 years, male, NA, stage:1, alive, 1110 days
0.2
DO48757
0 years, female, NA, stage:3, alive, 480 days
0.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
0.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
0.2
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
0.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
0.2
DO23511
0 years, female, NA, stage:3, dead, 180 days
0.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
0.2
DO50806
0 years, male, NA, stage:4, alive, 540 days
0.2
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.2
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.1
DO48682
0 years, female, NA, stage:3, dead, 120 days
0.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
0.1
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
0.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
0.1
DO23552
0 years, female, NA, stage:1, alive, 810 days
0.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
0.1
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.1
DO48741
0 years, male, NA, stage:3, alive, 240 days
0.1
DO23534
0 years, male, NA, stage:2, alive, 840 days
0.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
0.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
0.1
DO48732
0 years, male, NA, stage:3, alive, 630 days
0.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
0.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
0.1
DO50813
0 years, male, NA, stage:2, alive, 420 days
0.1
DO45221
0 years, female, NA, stage:4, dead, 390 days
0.1
DO45259
0 years, male, NA, stage:3, alive, 330 days
0.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.1
DO50820
0 years, female, NA, stage:3, alive, 510 days
0.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
0.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
0.1
DO48721
0 years, female, NA, stage:1, alive, 900 days
0.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
0.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
0.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
0.1
DO45115
0 years, male, NA, stage:2, alive, 840 days
0.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
0.1
DO48723
0 years, male, NA, stage:1, alive, 600 days
0.1
DO45199
0 years, female, NA, stage:2, alive, 1350 days
0.1
DO48761
0 years, male, NA, stage:2, alive, 870 days
0.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
0.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
0.1
DO23542
0 years, male, NA, stage:3, alive, 960 days
0.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
0.1
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.1
DO48715
0 years, female, NA, stage:2, dead, 690 days
0.0
DO48746
0 years, male, NA, stage:3, alive, 570 days
0.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
0.0
DO50783
0 years, male, NA, stage:3, alive, 480 days
0.0
DO45255
0 years, male, NA, stage:3, alive, 720 days
0.0
DO45183
0 years, female, NA, stage:2, dead, 570 days
0.0
DO45129
0 years, male, NA, stage:3, alive, 1470 days
0.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.0
DO45113
0 years, male, NA, stage:3, alive, 1560 days
0.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
0.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
0.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.0
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.0
DO50811
0 years, male, NA, stage:1, alive, 450 days
0.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.0
DO23516
0 years, male, NA, stage:3, dead, 20 days
0.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
0.0
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.0
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
0.0
DO45239
0 years, male, NA, stage:2, alive, 870 days
0.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.0
DO50822
0 years, male, NA, stage:2, alive, 510 days
0.0
DO45093
0 years, male, NA, stage:2, dead, 720 days
0.0
DO45105
0 years, male, NA, stage:1, alive, 1680 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
536
Normal
2.1
525
Tumor
1.5
956
Normal
1.4
192
Normal
1.4
874
Normal
1.3
353
Tumor
1.2
672
Normal
1.2
421
Tumor
1.1
424
Normal
1.1
426
Normal
1.1
422
Normal
1.1
498
Normal
1.1
414
Normal
1.1
272
Normal
1.0
428
Normal
1.0
538
Normal
1.0
191
Tumor
0.9
478
Normal
0.9
195
Tumor
0.9
958
Normal
0.9
954
Normal
0.9
258
Normal
0.9
262
Normal
0.8
267
Tumor
0.8
423
Tumor
0.8
516
Normal
0.8
944
Normal
0.8
984
Normal
0.8
976
Normal
0.7
223
Tumor
0.7
218
Normal
0.7
524
Normal
0.7
271
Tumor
0.7
286
Normal
0.7
188
Normal
0.7
671
Tumor
0.7
471
Tumor
0.7
257
Tumor
0.7
186
Normal
0.7
344
Normal
0.7
217
Tumor
0.7
515
Tumor
0.7
978
Normal
0.7
1044
Normal
0.6
864
Normal
0.6
916
Normal
0.6
354
Normal
0.6
492
Normal
0.6
468
Normal
0.6
365
Tumor
0.5
386
Normal
0.5
448
Normal
0.5
964
Normal
0.5
394
Normal
0.5
196
Normal
0.5
187
Tumor
0.5
447
Tumor
0.5
975
Tumor
0.5
716
Normal
0.5
713
Tumor
0.5
568
Normal
0.5
474
Normal
0.5
212
Normal
0.5
968
Normal
0.5
214
Normal
0.5
574
Normal
0.5
224
Normal
0.5
483
Tumor
0.5
642
Normal
0.5
172
Normal
0.4
388
Normal
0.4
938
Normal
0.4
868
Normal
0.4
491
Tumor
0.4
461
Tumor
0.4
366
Normal
0.4
545
Tumor
0.4
852
Normal
0.4
535
Tumor
0.4
882
Normal
0.4
814
Normal
0.4
396
Normal
0.4
914
Normal
0.4
493
Tumor
0.4
494
Normal
0.4
362
Normal
0.4
636
Normal
0.4
352
Normal
0.3
1045
Tumor
0.3
857
Tumor
0.3
462
Normal
0.3
982
Normal
0.3
817
Tumor
0.3
912
Normal
0.3
924
Normal
0.3
862
Normal
0.3
722
Normal
0.3
268
Normal
0.3
466
Normal
0.3
221
Tumor
0.3
721
Tumor
0.3
392
Normal
0.3
213
Tumor
0.3
328
Normal
0.3
662
Normal
0.3
232
Normal
0.3
376
Normal
0.3
686
Normal
0.3
572
Normal
0.3
383
Tumor
0.3
917
Tumor
0.3
911
Tumor
0.2
554
Normal
0.2
427
Tumor
0.2
482
Normal
0.2
452
Normal
0.2
185
Tumor
0.2
413
Tumor
0.2
966
Normal
0.2
472
Normal
0.2
816
Normal
0.2
361
Tumor
0.2
1046
Normal
0.2
162
Normal
0.2
148
Normal
0.2
451
Tumor
0.2
616
Normal
0.2
863
Tumor
0.2
161
Tumor
0.2
464
Normal
0.2
384
Normal
0.2
878
Normal
0.1
627
Tumor
0.1
553
Tumor
0.1
456
Normal
0.1
467
Tumor
0.1
953
Tumor
0.1
564
Normal
0.1
664
Normal
0.1
866
Normal
0.1
698
Normal
0.1
697
Tumor
0.1
823
Tumor
0.1
351
Tumor
0.1
147
Tumor
0.1
228
Normal
0.1
488
Normal
0.1
818
Normal
0.1
785
Tumor
0.1
884
Normal
0.1
546
Normal
0.1
714
Normal
0.1
618
Normal
0.1
518
Normal
0.1
416
Normal
0.0
918
Normal
0.0
261
Tumor
0.0
628
Normal
0.0
1016
Normal
0.0
211
Tumor
0.0
222
Normal
0.0
955
Tumor
0.0
858
Normal
0.0
744
Normal
0.0
528
Normal
0.0
283
Tumor
0.0
873
Tumor
0.0
786
Normal
0.0
666
Normal
0.0
455
Tumor
0.0
742
Normal
0.0
1014
Normal
0.0
696
Normal
0.0
284
Normal
-0.1
943
Tumor
-0.1
481
Tumor
-0.1
368
Normal
-0.1
813
Tumor
-0.1
567
Tumor
-0.1
615
Tumor
-0.1
558
Normal
-0.1
728
Normal
-0.1
356
Normal
-0.1
415
Tumor
-0.1
375
Tumor
-0.1
563
Tumor
-0.1
738
Normal
-0.1
364
Normal
-0.1
913
Tumor
-0.1
756
Normal
-0.2
867
Tumor
-0.2
922
Normal
-0.2
648
Normal
-0.2
963
Tumor
-0.2
881
Tumor
-0.2
526
Normal
-0.2
723
Tumor
-0.2
484
Normal
-0.2
231
Tumor
-0.2
571
Tumor
-0.2
425
Tumor
-0.2
412
Normal
-0.2
534
Normal
-0.2
342
Normal
-0.2
358
Normal
-0.2
641
Tumor
-0.3
171
Tumor
-0.3
921
Tumor
-0.3
327
Tumor
-0.3
363
Tumor
-0.3
952
Normal
-0.3
343
Tumor
-0.3
824
Normal
-0.3
617
Tumor
-0.4
727
Tumor
-0.4
926
Normal
-0.4
477
Tumor
-0.4
925
Tumor
-0.4
385
Tumor
-0.5
923
Tumor
-0.5
861
Tumor
-0.5
355
Tumor
-0.5
465
Tumor
-0.5
746
Normal
-0.5
937
Tumor
-0.5
778
Normal
-0.5
387
Tumor
-0.5
557
Tumor
-0.5
463
Tumor
-0.5
715
Tumor
-0.6
497
Tumor
-0.6
487
Tumor
-0.6
393
Tumor
-0.6
513
Tumor
-0.6
1043
Tumor
-0.6
983
Tumor
-0.6
514
Normal
-0.7
1015
Tumor
-0.7
724
Normal
-0.7
741
Tumor
-0.7
395
Tumor
-0.7
227
Tumor
-0.7
743
Tumor
-0.7
573
Tumor
-0.7
391
Tumor
-0.7
695
Tumor
-0.8
877
Tumor
-0.8
967
Tumor
-0.8
737
Tumor
-0.8
647
Tumor
-0.8
527
Tumor
-0.8
777
Tumor
-0.8
517
Tumor
-0.8
745
Tumor
-0.9
883
Tumor
-0.9
851
Tumor
-0.9
635
Tumor
-0.9
341
Tumor
-0.9
411
Tumor
-0.9
537
Tumor
-1.0
755
Tumor
-1.0
523
Tumor
-1.0
367
Tumor
-1.0
473
Tumor
-1.1
977
Tumor
-1.1
285
Tumor
-1.1
685
Tumor
-1.1
533
Tumor
-1.2
665
Tumor
-1.2
915
Tumor
-1.2
815
Tumor
-1.2
981
Tumor
-1.2
951
Tumor
-1.3
663
Tumor
-1.3
957
Tumor
-1.3
865
Tumor
-1.4
965
Tumor
-1.6
661
Tumor
-1.6
1013
Tumor
-1.8
357
Tumor
-2.7
111
Normal
N/A
112
Tumor
N/A
113
Tumor
N/A
114
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
125
Tumor
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
131
Tumor
N/A
132
Normal
N/A
135
Tumor
N/A
136
Normal
N/A
137
Tumor
N/A
138
Normal
N/A
141
Tumor
N/A
142
Normal
N/A
145
Tumor
N/A
146
Normal
N/A
1022
Normal
N/A
1021
Tumor
N/A
277
Tumor
N/A
278
Normal
N/A
1032
Normal
N/A
1031
Tumor
N/A
1028
Normal
N/A
1027
Tumor
N/A
1026
Normal
N/A
1025
Tumor
N/A
1042
Normal
N/A
1041
Tumor
N/A
297
Tumor
N/A
298
Normal
N/A
431
Tumor
N/A
311
Tumor
N/A
432
Normal
N/A
312
Normal
N/A
433
Tumor
N/A
313
Tumor
N/A
434
Normal
N/A
314
Normal
N/A
435
Tumor
N/A
436
Normal
N/A
443
Tumor
N/A
444
Normal
N/A
445
Tumor
N/A
446
Normal
N/A
331
Tumor
N/A
332
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
