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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
289.5
nTPM
HPA Brain:
738.6
nTPM
GTEx:
289.5
nTPM
FANTOM5:
91.1
Scaled Tags Per Million
Pig:
494.1
nTPM
Mouse:
430.7
nTPM
Allen mouse:
0.9
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
738.6
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 139.3
2219
Male, age 76, both hemispheres
660.7
2828
Female, age 72, unknown
131.7
2586
Male, age 75, left hemisphere
115.5
2666
Male, age 74, left hemisphere
101.7
1833
Male, age 53, unknown
77.7
2411
Female, age 72, unknown
74.3
1827
Male, age 72, unknown
66.2
1830
Male, age 51, unknown
60.2
1870
Female, age 42, unknown
56.1
2019
Male, age 18, unknown
49.2
Dorsal raphe nucleus nTPM: 87.0
2016
Female, age 72, unknown
113.1
1828
Male, age 53, unknown
91.3
2047
Male, age 72, unknown
78.1
2750
Male, age 76, both hemispheres
76.8
2298
Female, age 72, unknown
75.6
Inferior colliculus nTPM: 88.5
1890
Male, age 53, unknown
104.8
2097
Female, age 72, unknown
90.5
1848
Female, age 42, unknown
84.2
2849
Male, age 72, unknown
74.3
Median raphe nucleus nTPM: 56.1
2220
Male, age 76, midline
56.1
Periaquaductal grey, anterior nTPM: 62.7
2502
Female, age 75, unknown
88.3
1947
Male, age 18, unknown
53.8
1795
Male, age 51, unknown
46.1
Periaquaductal grey, dorsal nTPM: 81.1
1840
Male, age 53, unknown
108.7
2464
Female, age 72, unknown
84.2
2850
Male, age 76, both hemispheres
72.9
1831
Male, age 72, unknown
58.6
Periaquaductal grey, lateral nTPM: 54.3
2053
Male, age 18, unknown
61.3
2140
Male, age 76, both hemispheres
58.6
2272
Male, age 74, both hemispheres
43.0
Pretectal area nTPM: 65.3
1815
Male, age 53, unknown
90.7
2667
Female, age 75, unknown
89.4
1944
Female, age 72, unknown
84.4
1817
Female, age 42, unknown
74.3
2316
Male, age 76, right hemisphere
65.2
2825
Male, age 18, unknown
63.8
1816
Male, age 51, unknown
59.3
2007
Male, age 72, unknown
56.2
2407
Male, age 75, both hemispheres
50.8
2273
Male, age 74, both hemispheres
42.4
2224
Female, age 72, unknown
41.7
Red nucleus nTPM: 86.3
2503
Female, age 72, unknown
114.9
2725
Female, age 75, unknown
112.4
1821
Female, age 72, unknown
109.6
2823
Male, age 76, right hemisphere
108.4
2769
Male, age 72, unknown
87.7
1904
Male, age 53, unknown
84.8
2227
Male, age 72, unknown
84.8
2588
Male, age 74, left hemisphere
78.9
1954
Female, age 42, unknown
71.6
2584
Male, age 75, left hemisphere
70.3
1865
Male, age 51, unknown
69.0
2785
Male, age 18, unknown
42.7
Substantia nigra nTPM: 738.6
2699
Male, age 18, unknown
2165.2
1916
Female, age 42, unknown
1633.0
2241
Male, age 72, unknown
939.8
1941
Male, age 53, unknown
928.2
1851
Male, age 51, unknown
830.7
2409
Female, age 72, unknown
425.3
1889
Female, age 72, unknown
161.1
2665
Male, age 74, both hemispheres
116.5
2590
Female, age 75, unknown
95.2
2583
Male, age 75, right hemisphere
91.2
Superior colliculus nTPM: 77.7
2668
Female, age 75, unknown
121.3
2087
Female, age 72, unknown
94.2
1995
Male, age 72, unknown
90.0
1913
Female, age 42, unknown
76.7
1796
Male, age 53, unknown
74.4
2664
Male, age 75, both hemispheres
72.8
2587
Male, age 74, left hemisphere
72.5
1895
Male, age 76, right hemisphere
64.9
1839
Male, age 51, unknown
56.8
2261
Male, age 18, unknown
53.2
Ventral tegmental area nTPM: 544.6
2218
Male, age 76, both hemispheres
1081.4
1915
Female, age 42, unknown
879.7
1942
Male, age 51, unknown
650.9
2410
Female, age 72, unknown
478.5
2223
Female, age 72, unknown
95.4
2021
Male, age 53, unknown
81.8
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
289.5
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 289.5
Samples: 139
Max nTPM: 1344.8
Min nTPM: 17.5
Std nTPM: 264.8
Median nTPM: 203.3
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
1344.8
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
1306.3
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
1089.1
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
1041.5
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
1023.9
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
978.0
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
944.1
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
911.2
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
904.5
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
853.4
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
779.6
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
756.5
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
737.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
698.8
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
599.5
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
588.1
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
586.7
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
538.2
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
537.5
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
536.9
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
514.7
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
486.5
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
477.0
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
448.6
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
438.6
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
437.0
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
434.3
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
431.9
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
420.8
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
420.6
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
410.7
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
390.3
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
375.8
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
364.8
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
362.6
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
351.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
344.9
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
321.8
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
320.7
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
305.0
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
299.8
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
295.0
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
293.0
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
291.7
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
285.3
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
282.4
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
261.3
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
260.5
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
255.3
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
249.5
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
242.6
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
239.9
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
238.7
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
235.7
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
233.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
232.8
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
232.1
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
224.5
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
217.7
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
216.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
216.1
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
215.4
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
215.1
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
214.7
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
207.3
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
206.8
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
206.5
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
205.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
203.5
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
203.3
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
198.9
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
197.7
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
195.2
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
195.0
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
186.9
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
185.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
184.8
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
183.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
183.3
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
182.6
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
182.1
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
177.5
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
173.9
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
168.2
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
167.5
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
167.4
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
166.1
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
165.5
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
164.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
163.8
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
156.6
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
154.8
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
153.5
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
153.0
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
145.3
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
145.0
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
137.9
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
136.7
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
129.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
123.6
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
121.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
120.5
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
119.5
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
119.3
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
116.4
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
115.6
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
112.8
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
111.2
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
109.7
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
107.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
107.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
106.4
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
103.7
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
101.9
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
101.4
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
94.6
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
92.9
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
92.3
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
91.3
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
86.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
78.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
77.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
72.8
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
72.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
69.7
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
68.8
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
66.0
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
65.5
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
64.8
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
60.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
57.2
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
55.3
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
54.8
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
49.0
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
47.9
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
38.0
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
37.3
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
27.8
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
17.5
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MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
430.7
Mouse sample
Sample description
nTPM
Midbrain nTPM: 430.7
Samples: 4
Max nTPM: 446.7
Min nTPM: 420.3
Sample A
Male
422.7
Sample B
Male
420.3
Sample C
Female
446.7
Sample D
Female
433.1
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.