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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
43.4
Sample id
Sample description
nTPM
Amygdala nTPM: 43.4
2695
Female, age 67, right hemisphere
97.7
2814
Male, age 76, right hemisphere
75.4
2514
Male, age 75, right hemisphere
15.3
2517
Female, age 94, left hemisphere
14.8
1987
Female, age 91, left hemisphere
14.0
Basal amygdala nTPM: 28.4
1955
Male, age 76, both hemispheres
50.9
2110
Male, age 80, left hemisphere
33.7
2609
Male, age 75, right hemisphere
32.1
2827
Female, age 67, right hemisphere
20.2
2243
Female, age 91, right hemisphere
20.0
2685
Female, age 94, left hemisphere
13.6
Central amygdala nTPM: 29.9
1905
Male, age 76, both hemispheres
66.5
2826
Female, age 94, left hemisphere
28.7
2239
Male, age 80, left hemisphere
20.8
2515
Male, age 75, right hemisphere
19.0
2701
Female, age 91, right hemisphere
14.2
Corticomedial amygdala nTPM: 15.9
2240
Male, age 76, both hemispheres
31.3
2428
Male, age 75, right hemisphere
24.9
2829
Male, age 80, left hemisphere
15.6
2535
Female, age 67, right hemisphere
13.3
2429
Female, age 94, left hemisphere
7.9
2242
Female, age 91, right hemisphere
2.5
Lateral amygdala nTPM: 35.1
1883
Male, age 76, both hemispheres
80.7
2516
Male, age 75, right hemisphere
36.9
2830
Female, age 67, right hemisphere
27.3
2255
Female, age 91, right hemisphere
23.7
2534
Female, age 94, left hemisphere
21.7
2256
Male, age 80, left hemisphere
20.1
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
46.7
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 46.7
Samples: 152
Max nTPM: 187.1
Min nTPM: 3.6
Std nTPM: 34.6
Median nTPM: 38.4
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
187.1
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
169.6
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
164.2
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
139.9
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
133.3
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
124.8
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
119.8
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
118.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
115.3
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
112.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
109.9
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
108.1
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
106.0
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
97.3
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
95.8
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
93.1
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
92.5
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
88.7
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
85.2
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
84.1
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
82.8
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
82.0
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
78.8
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
78.4
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
74.9
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
74.4
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
73.4
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
72.3
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
71.1
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
68.6
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
67.9
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
67.7
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
66.8
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
64.8
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
63.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
62.6
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
61.0
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
61.0
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
60.7
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
59.4
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
59.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
58.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
58.2
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
56.6
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
53.7
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
53.3
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
53.0
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
52.8
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
52.5
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
51.8
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
51.8
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
51.6
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
51.0
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
50.5
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
49.1
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
48.7
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
48.3
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
47.7
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
47.2
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
46.9
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
46.5
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
46.2
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
45.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
44.4
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
44.3
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
42.2
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
41.7
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
41.1
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
41.1
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
40.7
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
40.5
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
40.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
40.3
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
39.8
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
39.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
38.5
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
38.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
38.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
37.7
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
36.8
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
36.3
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
36.2
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
35.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
35.8
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
35.3
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
34.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
34.0
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
32.8
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
32.4
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
31.8
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
31.6
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
30.3
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
29.7
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
29.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
28.8
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
28.5
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
28.1
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
28.0
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
27.9
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
26.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
26.3
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
26.1
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
25.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
25.3
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
24.2
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
23.9
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
23.7
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
23.6
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
22.9
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
22.5
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
22.2
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
22.2
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
21.7
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
21.5
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
21.3
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
21.0
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
20.6
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
20.5
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
20.4
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
20.0
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
19.7
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
19.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
18.8
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
18.7
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
18.6
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
18.6
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
18.1
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
17.1
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
16.8
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
16.7
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
16.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
16.5
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
14.4
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
14.1
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
13.6
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
13.3
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
12.0
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
11.4
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
11.3
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
11.0
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
10.9
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
10.9
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
10.2
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
10.2
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
8.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
7.0
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
6.7
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
5.2
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
4.9
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
4.8
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
3.7
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
3.6
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
93.1
Mouse sample
Sample description
nTPM
Amygdala nTPM: 93.1
Samples: 4
Max nTPM: 148.7
Min nTPM: 60.4
Sample A
Male
60.4
Sample B
Male
67.0
Sample C
Female
148.7
Sample D
Female
96.2
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.