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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
72.3
nTPM
HPA Brain:
70.9
nTPM
GTEx:
72.3
nTPM
FANTOM5:
40.3
Scaled Tags Per Million
Pig:
58.6
nTPM
Mouse:
121.2
nTPM
Allen mouse:
0.3
Expression energy
HIPPOCAMPUS - Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
70.9
Sample id
Sample description
nTPM
Hippocampus nTPM: 70.9
2148
Female, age 91, left hemisphere
119.2
1911
Female, age 85, right hemisphere
94.8
1855
Male, age 76, left hemisphere
60.8
1898
Male, age 80, left hemisphere
58.4
2621
Female, age 67, right hemisphere
48.0
2529
Female, age 94, left hemisphere
44.0
Dentate gyrus nTPM: 54.4
1927
Female, age 91, both hemispheres
83.9
2528
Male, age 74, both hemispheres
75.0
2530
Female, age 94, left hemisphere
52.4
2246
Female, age 85, both hemispheres
40.2
2010
Male, age 76, both hemispheres
39.7
2531
Female, age 67, both hemispheres
35.0
Entorhinal gyrus nTPM: 30.7
2117
Female, age 91, right hemisphere
85.3
1787
Male, age 76, left hemisphere
26.0
1938
Female, age 85, left hemisphere
23.0
2686
Male, age 75, right hemisphere
20.5
2764
Male, age 80, right hemisphere
15.2
2613
Female, age 94, left hemisphere
14.2
Hippocampus, CA1 nTPM: 46.0
1873
Female, age 85, both hemispheres
71.1
2527
Male, age 74, both hemispheres
57.6
2082
Female, age 91, right hemisphere
41.3
2045
Male, age 76, both hemispheres
39.2
2749
Male, age 80, left hemisphere
20.7
Hippocampus, CA2 nTPM: 50.3
2113
Female, age 91, right hemisphere
76.3
1963
Male, age 80, left hemisphere
58.8
2249
Male, age 74, both hemispheres
48.3
2437
Female, age 94, left hemisphere
42.7
1892
Male, age 76, both hemispheres
38.4
1940
Female, age 85, left hemisphere
37.3
Hippocampus, CA3 nTPM: 47.4
1891
Female, age 85, both hemispheres
77.6
2861
Female, age 67, both hemispheres
54.1
2620
Female, age 94, left hemisphere
48.7
1867
Male, age 76, both hemispheres
42.8
2436
Male, age 74, both hemispheres
37.4
2137
Male, age 80, left hemisphere
24.0
Parahippocampal cortex nTPM: 32.2
2018
Male, age 76, both hemispheres
52.3
2692
Male, age 74, both hemispheres
45.2
2245
Female, age 91, both hemispheres
41.5
1990
Female, age 91, right hemisphere
38.8
2622
Female, age 67, right hemisphere
36.3
2532
Female, age 72, left hemisphere
28.8
1850
Male, age 80, both hemispheres
26.2
1933
Female, age 85, both hemispheres
19.0
2693
Female, age 94, both hemispheres
18.4
2250
Female, age 67, right hemisphere
15.2
Perirhinal gyrus nTPM: 16.5
1841
Female, age 85, right hemisphere
25.6
1794
Male, age 80, right hemisphere
20.7
1847
Female, age 91, left hemisphere
15.6
2848
Male, age 76, right hemisphere
11.2
2521
Female, age 94, right hemisphere
9.3
Subiculum nTPM: 55.9
2729
Female, age 91, right hemisphere
116.4
2438
Female, age 94, left hemisphere
51.9
2619
Male, age 74, both hemispheres
49.8
2042
Male, age 76, both hemispheres
47.9
1901
Male, age 80, both hemispheres
43.7
1977
Female, age 85, both hemispheres
25.4
HIPPOCAMPAL FORMATION - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
72.3
GTEx sample id
Sample description
nTPM
Brain - Hippocampus Average nTPM: 72.3
Samples: 197
Max nTPM: 213.5
Min nTPM: 4.2
Std nTPM: 30.2
Median nTPM: 68.6
GTEX-11ZTS-0011-R1a-SM-5BC71
60-69 years, female
213.5
GTEX-131YS-0011-R1a-SM-5DUXC
60-69 years, female
159.3
GTEX-1J8Q2-0011-R1a-SM-D4P2D
60-69 years, male
145.6
GTEX-1F75W-0011-R1a-SM-ARU81
60-69 years, male
135.4
GTEX-14PJO-0011-R1b-SM-6AJAK
60-69 years, male
132.8
GTEX-NPJ7-0011-R1a-SM-3GACT
60-69 years, female
128.9
GTEX-1IY9M-0011-R1a-SM-EXURZ
60-69 years, male
128.0
GTEX-1A3MX-0011-R1b-SM-7P8PH
60-69 years, male
125.6
GTEX-17F97-0011-R1b-SM-7IGM9
50-59 years, male
122.2
GTEX-17JCI-0011-R1b-SM-718A3
60-69 years, female
121.4
GTEX-1CAV2-0011-R1a-SM-ARZML
40-49 years, female
121.3
GTEX-13NYB-0011-R1b-SM-5KM4F
40-49 years, male
118.4
GTEX-11GS4-0011-R1a-SM-DO129
60-69 years, male
118.3
GTEX-1H1CY-0011-R1a-SM-CKZOZ
60-69 years, female
118.1
GTEX-14LLW-0011-R1a-SM-5ZZVD
70-79 years, female
117.7
GTEX-17HG3-0011-R1a-SM-7LG6H
30-39 years, female
117.3
GTEX-14ABY-0011-R1a-SM-6EU2W
50-59 years, male
114.1
GTEX-ZVZQ-0011-R1a-SM-57WBU
60-69 years, female
114.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV
50-59 years, male
113.8
GTEX-1HSKV-0011-R1b-SM-CMKH7
60-69 years, male
113.2
GTEX-13O3Q-0011-R1b-SM-5KM3L
50-59 years, male
112.7
GTEX-1BAJH-0011-R1a-SM-7P8SV
70-79 years, male
111.7
GTEX-1GTWX-0011-R1a-SM-CE6RL
60-69 years, male
111.7
GTEX-13CF2-0011-R1a-SM-5LZY1
60-69 years, male
111.6
GTEX-QVUS-0011-R1A-SM-3GAD2
60-69 years, female
110.6
GTEX-13QJC-0011-R1b-SM-5S2UU
60-69 years, female
109.5
GTEX-11UD1-0011-R1b-SM-5BC7D
40-49 years, female
109.3
GTEX-13QIC-0011-R1a-SM-5O9CJ
60-69 years, female
108.7
GTEX-WVLH-0011-R1A-SM-4MVOK
50-59 years, male
107.1
GTEX-1A32A-0011-R1a-SM-7P8SQ
50-59 years, female
106.4
GTEX-14PQA-0011-R1b-SM-6EU1G
50-59 years, female
106.2
GTEX-1H4P4-0011-R1b-SM-CL54V
50-59 years, male
105.8
GTEX-S7SE-0011-R1A-SM-2XCDE
50-59 years, male
105.4
GTEX-1HT8W-0011-R1b-SM-CJI3V
30-39 years, male
105.4
GTEX-1B8L1-0011-R1a-SM-7P8SS
60-69 years, male
104.8
GTEX-1HR98-0011-R1a-SM-ARZLQ
60-69 years, male
103.0
GTEX-1J1OQ-0011-R1a-SM-A9G1Z
40-49 years, female
101.8
GTEX-ZUA1-0011-R1a-SM-4YCE2
40-49 years, male
101.2
GTEX-1GF9V-0011-R1a-SM-CKZNQ
60-69 years, male
100.9
GTEX-144GO-0011-R1a-SM-5PNWO
60-69 years, male
100.0
GTEX-11GSO-0011-R1b-SM-57WD3
60-69 years, male
99.0
GTEX-1B933-0011-R1b-SM-9QEGW
50-59 years, female
97.9
GTEX-16GPK-0011-R1b-SM-7EWDH
60-69 years, male
97.0
GTEX-1B996-0011-R1b-SM-7P8PO
60-69 years, male
96.2
GTEX-QMR6-0011-R1A-SM-32PKW
50-59 years, male
95.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV
50-59 years, male
95.1
GTEX-1GMR8-0011-R1b-SM-CJI2O
50-59 years, female
93.6
GTEX-11ONC-0011-R1a-SM-57WD4
60-69 years, male
93.5
GTEX-13OW8-0011-R1a-SM-5L3HI
60-69 years, male
92.3
GTEX-11TUW-0011-R1a-SM-DO92S
60-69 years, male
92.1
GTEX-13RTL-0011-R1a-SM-5PNZ8
40-49 years, male
91.9
GTEX-16Z82-0011-R1b-SM-7EPHZ
60-69 years, male
91.8
GTEX-13OVJ-0011-R1b-SM-5L3I6
50-59 years, female
89.1
GTEX-14E7W-0011-R1b-SM-5YYAT
70-79 years, male
88.6
GTEX-12WSH-0011-R1a-SM-5GU5V
50-59 years, male
87.3
GTEX-12ZZX-0011-R1a-SM-5EQ6B
40-49 years, female
86.2
GTEX-1399T-0011-R1b-SM-5DUWN
60-69 years, male
85.0
GTEX-14PJM-0011-R1a-SM-CNPO3
50-59 years, female
84.7
GTEX-1212Z-0011-R1b-SM-5BC72
60-69 years, male
84.3
GTEX-145LS-0011-R1b-SM-5PNUP
60-69 years, female
83.9
GTEX-1I1GQ-0011-R1a-SM-CY8GG
50-59 years, male
83.3
GTEX-145LU-0011-R1a-SM-5Q5CE
50-59 years, male
82.8
GTEX-15CHQ-0011-R1a-SM-COH27
60-69 years, male
82.8
GTEX-1EKGG-0011-R1b-SM-9QEI1
60-69 years, male
82.8
GTEX-14C5O-0011-R1b-SM-6AJBW
60-69 years, male
82.6
GTEX-11GSP-0011-R1a-SM-9QEJ3
60-69 years, female
81.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E
70-79 years, male
81.6
GTEX-1HBPI-0011-R1b-SM-A9SKF
50-59 years, male
81.1
GTEX-1H3O1-0011-R1b-SM-CL554
60-69 years, male
80.7
GTEX-11ZVC-0011-R1b-SM-5BC6M
50-59 years, female
80.1
GTEX-13OW6-0011-R1a-SM-5L3HQ
50-59 years, male
78.8
GTEX-14JIY-0011-R1a-SM-68713
60-69 years, male
78.5
GTEX-1GZHY-0011-R1a-SM-CE6RR
50-59 years, female
78.4
GTEX-Y8DK-0011-R1A-SM-4RGLO
60-69 years, male
78.1
GTEX-1GN73-0011-R1a-SM-CKZNT
60-69 years, male
78.1
GTEX-YJ89-0011-R1a-SM-4RGLS
60-69 years, male
77.9
GTEX-18A6Q-0011-R1b-SM-731DI
60-69 years, male
77.3
GTEX-11DXW-0011-R1a-SM-DNZZD
40-49 years, male
76.3
GTEX-14PN4-0011-R1b-SM-69LP8
50-59 years, male
76.1
GTEX-13NYS-0011-R1b-SM-5MR55
60-69 years, male
75.9
GTEX-XMD1-0011-R1A-SM-4AT4C
60-69 years, male
75.7
GTEX-13NZA-0011-R1b-SM-5LUAF
60-69 years, male
75.6
GTEX-T5JC-0011-R1A-SM-32PM6
20-29 years, male
75.1
GTEX-1C64N-0011-R1b-SM-7P8Q7
50-59 years, male
75.1
GTEX-13N2G-0011-R1b-SM-5MR3G
60-69 years, male
74.6
GTEX-TSE9-0011-R1A-SM-3DB7E
60-69 years, female
74.1
GTEX-1H23P-0011-R1a-SM-ACKVC
60-69 years, male
73.6
GTEX-1C6VR-0011-R1a-SM-7MXUE
60-69 years, male
72.9
GTEX-145MH-0011-R1b-SM-5PNWY
50-59 years, male
72.7
GTEX-132Q8-0011-R1a-SM-5EGLK
60-69 years, male
72.4
GTEX-13JVG-0011-R1a-SM-5KM32
60-69 years, male
72.4
GTEX-1HGF4-0011-R1a-SM-CJI3S
60-69 years, male
72.1
GTEX-15UF6-0011-R1a-SM-9QEGH
70-79 years, female
71.7
GTEX-1I1GV-0011-R1a-SM-CL559
60-69 years, male
71.4
GTEX-1IOXB-0011-R1a-SM-D4P27
50-59 years, male
70.9
GTEX-13FHP-0011-R1b-SM-5K7XL
50-59 years, male
70.1
GTEX-144GL-0011-R1a-SM-5PNZ5
50-59 years, male
69.8
GTEX-16NPV-0011-R1b-SM-7MGVZ
50-59 years, female
68.7
GTEX-WZTO-0011-R1B-SM-3NMAR
40-49 years, male
68.6
GTEX-1A8G6-0011-R1a-SM-7P8PC
60-69 years, male
68.0
GTEX-1F6IF-0011-R1b-SM-9WG78
60-69 years, male
67.9
GTEX-13S7M-0011-R1b-SM-5PNZE
60-69 years, female
67.8
GTEX-R55E-0011-R1A-SM-2TC6N
20-29 years, male
66.2
GTEX-1HSMO-0011-R1a-SM-CM2SV
60-69 years, male
65.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7
70-79 years, female
65.1
GTEX-13FLW-0011-R1b-SM-5LZX2
50-59 years, male
64.6
GTEX-1E1VI-0011-R1a-SM-ARZMM
50-59 years, male
64.5
GTEX-12WSE-0011-R1b-SM-5GU4V
20-29 years, male
64.2
GTEX-PVOW-0011-R1A-SM-32PL6
40-49 years, male
64.0
GTEX-15ER7-0011-R1b-SM-7KUE1
20-29 years, female
63.6
GTEX-11EI6-0011-R1a-SM-DO93L
60-69 years, male
63.3
GTEX-13OVL-0011-R1a-SM-5L3H5
50-59 years, male
63.0
GTEX-1GN2E-0011-R1b-SM-CE6RJ
60-69 years, male
62.6
GTEX-183WM-0011-R1a-SM-718A8
70-79 years, female
62.5
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y
40-49 years, male
62.0
GTEX-1H1DG-0011-R1b-SM-CKZP1
70-79 years, male
61.3
GTEX-1313W-0011-R1b-SM-5EQ4A
50-59 years, female
61.2
GTEX-1I1GS-0011-R1a-SM-CJI43
60-69 years, male
61.2
GTEX-13SLW-0011-R1a-SM-5S2W7
70-79 years, male
60.9
GTEX-1IDJH-0011-R1b-SM-ARU6U
70-79 years, male
60.4
GTEX-13G51-0011-R1a-SM-5LZYR
60-69 years, male
59.7
GTEX-Q2AG-0011-R1A-SM-2HMJI
40-49 years, female
59.7
GTEX-13OW5-0011-R1b-SM-5L3GE
60-69 years, male
59.1
GTEX-16YQH-0011-R1a-SM-7LT8R
30-39 years, male
58.8
GTEX-ZDXO-0011-R1a-SM-4WKF4
60-69 years, male
58.5
GTEX-NPJ8-0011-R1a-SM-33HCB
40-49 years, male
58.3
GTEX-17HII-0011-R1b-SM-7MGVW
50-59 years, male
57.9
GTEX-12WSD-0011-R1b-SM-5LZVY
60-69 years, female
57.0
GTEX-YFC4-0011-R1a-SM-4V6EH
40-49 years, female
56.7
GTEX-1GN1U-0011-R1a-SM-CJI25
50-59 years, female
56.7
GTEX-1F75A-0011-R1b-SM-CE6RA
50-59 years, male
56.5
GTEX-PWO3-0011-R1A-SM-2I5EW
60-69 years, female
55.1
GTEX-13OW7-0011-R1b-SM-5L3HF
50-59 years, male
54.9
GTEX-13FTY-0011-R1a-SM-5LZXE
40-49 years, female
54.6
GTEX-17EVP-0011-R1a-SM-7DHLA
40-49 years, male
54.0
GTEX-1GF9W-0011-R1a-SM-9QEIQ
60-69 years, male
53.9
GTEX-T6MN-0011-R1A-SM-32QOY
50-59 years, male
53.7
GTEX-17EVQ-0011-R1a-SM-7189S
70-79 years, male
53.6
GTEX-N7MT-0011-R1a-SM-CNPO1
60-69 years, female
52.9
GTEX-OHPN-0011-R1A-SM-2I5GB
60-69 years, female
52.7
GTEX-13X6I-0011-R1b-SM-5PNZC
60-69 years, male
52.4
GTEX-17MF6-0011-R1a-SM-72D6O
40-49 years, male
52.3
GTEX-17HHY-0011-R1a-SM-7189V
50-59 years, male
52.2
GTEX-14BIM-0011-R1a-SM-69LQI
60-69 years, female
52.1
GTEX-1F6I4-0011-R1a-SM-9OSWU
60-69 years, male
52.0
GTEX-13FXS-0011-R1a-SM-5K7U6
50-59 years, male
51.9
GTEX-1EMGI-0011-R1b-SM-9OSWZ
60-69 years, male
51.8
GTEX-UTHO-0011-R1A-SM-3GIJO
60-69 years, male
51.6
GTEX-131XH-0011-R1a-SM-5DUWA
50-59 years, male
51.5
GTEX-1IKK5-0011-R1b-SM-CE6SQ
60-69 years, male
51.2
GTEX-139TT-0011-R1a-SM-5LZVD
60-69 years, male
50.7
GTEX-12WSM-0011-R1a-SM-5LZW6
60-69 years, male
49.9
GTEX-WHSE-0011-R1A-SM-3P5ZK
20-29 years, male
49.7
GTEX-1CB4G-0011-R1b-SM-9QEHT
60-69 years, male
49.3
GTEX-1EH9U-0011-R1b-SM-CJI2B
60-69 years, male
48.3
GTEX-1H3VE-0011-R1a-SM-A9G1K
40-49 years, male
47.8
GTEX-1CB4J-0011-R1a-SM-9WG64
60-69 years, male
47.2
GTEX-13PDP-0011-R1a-SM-5PNX5
60-69 years, male
46.7
GTEX-1AX9I-0011-R1b-SM-7RHG2
60-69 years, male
46.5
GTEX-WWYW-0011-R1A-SM-3TW8G
50-59 years, female
46.2
GTEX-ZE7O-0011-R1a-SM-57WDM
50-59 years, female
46.1
GTEX-RNOR-0011-R1A-SM-CNNP5
50-59 years, female
45.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8
60-69 years, male
45.1
GTEX-13112-0011-R1b-SM-5HL7K
50-59 years, male
45.0
GTEX-11WQC-0011-R1b-SM-DO932
60-69 years, male
45.0
GTEX-1F48J-0011-R1a-SM-9QEIC
50-59 years, female
44.6
GTEX-P44H-0011-R1A-SM-3NM8J
40-49 years, male
44.0
GTEX-15DCD-0011-R1b-SM-6LPIJ
70-79 years, female
43.6
GTEX-12WSF-0011-R1a-SM-5DUVI
70-79 years, male
43.3
GTEX-14ASI-0011-R1b-SM-5S2TY
60-69 years, male
43.2
GTEX-N7MS-0011-R1a-SM-2HMJG
60-69 years, male
42.8
GTEX-WL46-0011-R1A-SM-3LK6M
50-59 years, male
42.5
GTEX-ZAB4-0011-R1a-SM-4RGNO
40-49 years, male
42.4
GTEX-14E6D-0011-R1b-SM-5YYAW
50-59 years, male
41.4
GTEX-ZF28-0011-R1a-SM-4WWD1
60-69 years, male
40.8
GTEX-13O3O-0011-R1b-SM-5KM2K
60-69 years, female
39.8
GTEX-P44G-0011-R1A-SM-2I3FE
30-39 years, male
38.7
GTEX-QVJO-0011-R1A-SM-2S1QI
60-69 years, female
36.8
GTEX-QDT8-0011-R1A-SM-32PKS
30-39 years, female
36.6
GTEX-1C6VQ-0011-R1a-SM-7P8Q2
50-59 years, male
35.7
GTEX-1ICLZ-0011-R1b-SM-A9SM3
60-69 years, male
35.0
GTEX-13RTJ-0011-R1a-SM-5O9D9
60-69 years, male
34.8
GTEX-1I1HK-0011-R1b-SM-CM2T7
60-69 years, male
32.3
GTEX-1EX96-0011-R1a-SM-CE6R5
50-59 years, male
32.1
GTEX-X4XX-0011-R1B-SM-3P622
60-69 years, male
29.8
GTEX-13JUV-0011-R1a-SM-5LZY4
40-49 years, female
28.1
GTEX-1E2YA-0011-R1b-SM-CJI29
50-59 years, male
28.0
GTEX-13NZ8-0011-R1b-SM-5KM3V
60-69 years, female
27.3
GTEX-13N1W-0011-R1b-SM-5MR4T
70-79 years, male
25.9
GTEX-14LZ3-0011-R1a-SM-69LP5
60-69 years, female
25.6
GTEX-NL3H-0011-R1a-SM-48TDJ
60-69 years, male
25.4
GTEX-X4EP-0011-R1A-SM-3P624
60-69 years, female
24.2
GTEX-13FHO-0011-R1b-SM-5KLZG
60-69 years, male
21.4
GTEX-16XZZ-0011-R1a-SM-7LTAH
60-69 years, male
21.4
GTEX-1H3NZ-0011-R1a-SM-CKZP5
60-69 years, male
20.1
GTEX-139T8-0011-R1a-SM-5HL75
60-69 years, male
17.3
GTEX-X585-0011-R1B-SM-46MVE
50-59 years, male
4.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
121.2
Mouse sample
Sample description
nTPM
Entorhinal cortex nTPM: 75.4
Samples: 4
Max nTPM: 97.8
Min nTPM: 48.2
Sample A
Male
90.7
Sample B
Male
64.9
Sample C
Female
97.8
Sample D
Female
48.2
Hippocampal formation nTPM: 121.2
Samples: 4
Max nTPM: 136.5
Min nTPM: 109.7
Sample A
Male
111.3
Sample B
Male
109.7
Sample C
Female
136.5
Sample D
Female
127.4
HIPPOCAMPAL FORMATION - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.