MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.2 nTPM
HPA Brain:52.9 nTPM
GTEx:7.2 nTPM
FANTOM5:13.9 Scaled Tags Per Million
Pig:41.3 nTPM
Mouse:53.6 nTPM
Allen mouse:9.3 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 52.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.0
2019 Male, age 18, unknown 64.0
2219 Male, age 76, both hemispheres 57.6
1827 Male, age 72, unknown 36.4
2586 Male, age 75, left hemisphere 30.1
2411 Female, age 72, unknown 28.2
2828 Female, age 72, unknown 27.4
2666 Male, age 74, left hemisphere 26.9
1833 Male, age 53, unknown 24.9
1870 Female, age 42, unknown 22.5
1830 Male, age 51, unknown 22.3
Dorsal raphe nucleus
nTPM: 27.2
2298 Female, age 72, unknown 35.0
2047 Male, age 72, unknown 33.6
2750 Male, age 76, both hemispheres 26.9
2016 Female, age 72, unknown 21.0
1828 Male, age 53, unknown 19.6
Inferior colliculus
nTPM: 38.0
1848 Female, age 42, unknown 45.6
2097 Female, age 72, unknown 39.4
2849 Male, age 72, unknown 34.3
1890 Male, age 53, unknown 32.7
Median raphe nucleus
nTPM: 39.6
2220 Male, age 76, midline 39.6
Periaquaductal grey, anterior
nTPM: 24.5
1795 Male, age 51, unknown 32.3
2502 Female, age 75, unknown 23.5
1947 Male, age 18, unknown 17.6
Periaquaductal grey, dorsal
nTPM: 28.7
1840 Male, age 53, unknown 39.4
1831 Male, age 72, unknown 31.4
2464 Female, age 72, unknown 26.7
2850 Male, age 76, both hemispheres 17.5
Periaquaductal grey, lateral
nTPM: 18.3
2053 Male, age 18, unknown 21.8
2272 Male, age 74, both hemispheres 16.7
2140 Male, age 76, both hemispheres 16.4
Pretectal area
nTPM: 41.8
1817 Female, age 42, unknown 74.6
1944 Female, age 72, unknown 70.0
2007 Male, age 72, unknown 63.5
1816 Male, age 51, unknown 61.4
1815 Male, age 53, unknown 39.4
2316 Male, age 76, right hemisphere 32.5
2407 Male, age 75, both hemispheres 30.7
2667 Female, age 75, unknown 27.1
2224 Female, age 72, unknown 22.0
2825 Male, age 18, unknown 21.8
2273 Male, age 74, both hemispheres 16.7
Red nucleus
nTPM: 33.9
2785 Male, age 18, unknown 53.2
1904 Male, age 53, unknown 42.1
2584 Male, age 75, left hemisphere 41.0
1954 Female, age 42, unknown 36.9
1821 Female, age 72, unknown 36.7
2503 Female, age 72, unknown 35.2
2588 Male, age 74, left hemisphere 33.8
2227 Male, age 72, unknown 30.1
2769 Male, age 72, unknown 29.0
2823 Male, age 76, right hemisphere 28.7
1865 Male, age 51, unknown 25.8
2725 Female, age 75, unknown 14.6
Substantia nigra
nTPM: 29.5
1889 Female, age 72, unknown 51.4
1916 Female, age 42, unknown 38.9
2583 Male, age 75, right hemisphere 34.5
1851 Male, age 51, unknown 30.6
1941 Male, age 53, unknown 28.9
2241 Male, age 72, unknown 27.4
2665 Male, age 74, both hemispheres 26.4
2409 Female, age 72, unknown 24.5
2699 Male, age 18, unknown 18.4
2590 Female, age 75, unknown 13.7
Superior colliculus
nTPM: 52.9
2668 Female, age 75, unknown 225.0
2087 Female, age 72, unknown 57.7
1796 Male, age 53, unknown 50.7
1895 Male, age 76, right hemisphere 42.2
2261 Male, age 18, unknown 33.1
1839 Male, age 51, unknown 32.0
2664 Male, age 75, both hemispheres 27.9
2587 Male, age 74, left hemisphere 21.0
1913 Female, age 42, unknown 20.7
1995 Male, age 72, unknown 18.2
Ventral tegmental area
nTPM: 29.4
2410 Female, age 72, unknown 38.4
2223 Female, age 72, unknown 32.8
2218 Male, age 76, both hemispheres 32.6
1915 Female, age 42, unknown 26.5
1942 Male, age 51, unknown 25.0
2021 Male, age 53, unknown 21.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 7.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.2
Samples: 139

Max nTPM: 32.9
Min nTPM: 0.4
Std nTPM: 5.3
Median nTPM: 6.0
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 32.9
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 26.6
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 22.1
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 21.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 20.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 20.3
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 19.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 14.3
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 14.3
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 14.1
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 13.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 13.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 13.9
FF:10158-103A5 76 years, female 13.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 41.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 13.6
Samples: 4

Max nTPM: 20.7
Min nTPM: 4.3
Sample A Female 20.7
Sample B Female 11.2
Sample C Male 18.0
Sample D Male 4.3
Midbrain
nTPM: 41.3
Samples: 4

Max nTPM: 87.3
Min nTPM: 11.7
Sample A Female 27.5
Sample B Female 11.7
Sample C Male 87.3
Sample D Male 38.6
Periaqueductal gray
nTPM: 10.4
Samples: 3

Max nTPM: 12.3
Min nTPM: 8.7
Sample B Female 10.2
Sample C Male 12.3
Sample D Male 8.7
Superior colliculi
nTPM: 33.8
Samples: 4

Max nTPM: 49.2
Min nTPM: 26.5
Sample A Female 28.7
Sample B Female 30.9
Sample C Male 49.2
Sample D Male 26.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 53.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.6
Samples: 4

Max nTPM: 57.6
Min nTPM: 51.2
Sample A Male 51.2
Sample B Male 52.5
Sample C Female 57.6
Sample D Female 53.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 9.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.3
100143519 Antisense, RP_110407_01_E03, Mouse strain C57BL/6J (56 days, male) 9.3

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