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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSIP1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
14.0
Number of samples
362
Samples
Sample
Description
TPM
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
78.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
75.7
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
73.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
69.9
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
66.6
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
62.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
61.6
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
60.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
56.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
50.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
49.5
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
49.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
46.6
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
44.7
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
42.7
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
42.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
41.0
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
40.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
40.0
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
39.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
39.3
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
38.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
38.2
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
37.9
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
36.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
36.9
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
35.5
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
35.3
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
35.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
34.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
33.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
32.1
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
31.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
31.3
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
30.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
30.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
30.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
30.0
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
29.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
28.4
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
27.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
27.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
27.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
26.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
26.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
26.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
25.9
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
24.5
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
23.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
23.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
23.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
23.1
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
22.7
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
22.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
21.9
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
21.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
21.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
21.6
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
21.6
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
21.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
20.9
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
20.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
20.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
20.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
20.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
20.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
20.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
20.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
20.0
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
19.8
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
19.3
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
19.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
18.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
18.7
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
18.5
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
18.3
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
17.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
17.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
17.7
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
17.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
17.0
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
17.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
16.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
16.5
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
16.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
16.3
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16.2
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
16.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
16.0
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
16.0
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.8
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
15.7
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
15.6
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.5
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
15.5
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
15.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
15.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
15.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
14.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
14.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
14.9
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
14.7
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
14.7
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
14.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
14.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
14.3
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
14.2
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
14.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
14.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
14.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
14.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
13.9
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
13.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
13.6
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.5
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
13.3
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
13.2
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
13.1
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
13.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.0
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
12.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
12.9
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
12.8
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
12.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
12.8
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
12.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
12.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
12.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
12.6
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.6
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
12.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
12.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
12.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
12.4
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
12.4
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
12.3
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
12.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
12.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
12.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
12.0
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
11.9
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
11.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
11.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
11.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
11.8
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
11.8
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
11.8
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
11.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
11.7
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
11.5
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
11.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.4
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
11.3
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.2
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
11.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
11.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
11.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
10.9
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
10.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
10.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
10.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
10.7
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
10.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
10.4
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.4
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
10.4
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
10.3
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
10.3
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
10.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
10.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
10.1
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
10.0
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
9.9
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
9.8
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
9.8
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
9.7
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
9.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
9.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
9.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
9.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
9.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
9.3
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
9.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
9.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.3
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
9.3
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.1
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
9.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
9.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
9.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
9.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
9.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
8.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
8.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
8.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
8.8
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.8
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
8.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
8.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
8.7
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
8.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
8.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
8.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
8.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
8.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
8.6
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
8.6
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.5
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
8.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.5
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
8.5
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
8.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
8.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
8.4
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
8.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
8.4
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
8.3
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
8.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
8.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
8.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
8.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
8.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
8.0
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
8.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
8.0
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
7.9
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
7.9
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.9
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
7.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
7.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
7.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
7.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
7.6
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
7.6
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
7.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
7.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
7.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
7.4
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
7.4
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
7.3
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
7.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
7.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
7.2
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
7.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
7.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
7.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.1
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
7.1
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
7.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
7.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
7.0
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
6.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
6.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
6.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
6.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
6.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.7
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
6.7
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
6.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
6.5
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
6.5
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
6.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
6.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
6.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
6.3
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.3
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
6.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
6.2
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
6.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
6.1
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.1
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
6.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
6.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
5.9
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
5.8
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
5.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
5.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
5.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
5.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
5.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
5.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
5.5
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
5.5
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
5.5
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
5.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
5.4
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
5.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
5.4
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
5.4
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
5.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
5.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
5.3
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
5.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
5.1
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
5.1
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.0
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
5.0
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
4.9
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
4.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
4.8
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
4.8
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.7
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
4.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
4.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
4.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
4.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
4.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
4.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
4.6
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
4.5
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
4.5
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
4.4
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
4.2
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
4.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
4.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
4.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
4.1
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
4.1
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
4.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
3.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
3.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
3.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
3.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
3.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.8
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
3.7
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
3.7
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
3.6
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.6
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
3.5
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
3.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
3.5
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
3.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
3.1
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
3.1
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
3.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
3.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
2.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
2.4
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
2.3
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
2.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
1.9
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
PSIP1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
13.1
Number of samples
231
Samples
Sample
Description
TPM
DO23543
0 years, male, NA, stage:2, alive, 1020 days
52.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
50.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
46.1
DO50804
0 years, male, NA, stage:2, alive, 720 days
44.1
DO50798
0 years, male, NA, stage:3, dead, 30 days
38.7
DO23552
0 years, female, NA, stage:1, alive, 810 days
38.6
DO45235
0 years, female, NA, stage:1, alive, 900 days
36.9
DO23509
0 years, male, NA, stage:3, dead, 780 days
36.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
34.9
DO48732
0 years, male, NA, stage:3, alive, 630 days
34.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
32.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
32.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
32.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
31.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
29.4
DO45177
0 years, female, NA, stage:3, alive, 1260 days
29.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
29.0
DO45259
0 years, male, NA, stage:3, alive, 330 days
28.0
DO48717
0 years, male, NA, stage:4, dead, 180 days
27.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
27.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
25.2
DO45173
0 years, male, NA, stage:3, alive, 1170 days
25.2
DO23521
0 years, male, NA, stage:3, alive, 1110 days
24.3
DO45127
0 years, male, NA, stage:3, dead, 420 days
24.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
24.0
DO50807
0 years, male, NA, stage:1, alive, 540 days
23.7
DO23513
0 years, male, NA, stage:3, alive, 1200 days
22.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
22.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
21.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
21.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
21.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
21.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
21.2
DO23530
0 years, male, NA, stage:4, dead, 180 days
21.0
DO45145
0 years, male, NA, stage:3, dead, 60 days
20.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
19.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
18.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
18.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
18.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
18.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
18.2
DO45185
0 years, male, NA, stage:2, alive, 600 days
18.2
DO23537
0 years, male, NA, stage:2, dead, 900 days
18.0
DO45157
0 years, male, NA, stage:2, alive, 1980 days
17.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
16.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
16.7
DO48720
0 years, female, NA, stage:2, alive, 570 days
16.6
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.5
DO23519
0 years, male, NA, stage:3, alive, 630 days
16.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
15.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
15.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
15.6
DO48730
0 years, female, NA, stage:2, alive, 630 days
15.3
DO50808
0 years, male, NA, stage:2, alive, 570 days
15.0
DO50820
0 years, female, NA, stage:3, alive, 510 days
15.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
14.9
DO23540
0 years, male, NA, stage:1, alive, 750 days
14.9
DO23546
0 years, male, NA, stage:2, alive, 1050 days
14.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
14.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
14.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
14.6
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
14.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.2
DO23535
0 years, male, NA, stage:1, alive, 960 days
14.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
14.1
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
13.9
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
13.5
DO50809
0 years, male, NA, stage:3, dead, 720 days
13.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
13.2
DO45183
0 years, female, NA, stage:2, dead, 570 days
13.2
DO45247
0 years, female, NA, stage:2, alive, 210 days
13.2
DO45141
0 years, male, NA, stage:2, alive, 1320 days
13.1
DO45273
0 years, male, NA, stage:2, alive, 480 days
13.0
DO48681
0 years, male, NA, stage:2, alive, 900 days
13.0
DO45191
0 years, female, NA, stage:2, alive, 1200 days
12.8
DO23515
0 years, male, NA, stage:2, alive, 1230 days
12.7
DO50859
0 years, male, NA, stage:2, alive, 180 days
12.5
DO50800
0 years, male, NA, stage:2, alive, 510 days
12.4
DO45249
0 years, male, NA, stage:1, alive, 630 days
12.4
DO45135
0 years, male, NA, stage:1, alive, 1410 days
12.3
DO45149
0 years, female, NA, stage:2, alive, 1260 days
12.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
12.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
12.2
DO45283
0 years, male, NA, stage:3, alive, 510 days
12.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
12.2
DO45209
0 years, male, NA, stage:4, alive, 1350 days
12.0
DO50845
0 years, male, NA, stage:3, alive, 210 days
12.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
12.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
11.9
DO45189
0 years, female, NA, stage:2, alive, 1200 days
11.9
DO45094
0 years, male, NA, stage:3, alive, 1650 days
11.9
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
11.8
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
11.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.7
DO45181
0 years, female, NA, stage:2, alive, 1200 days
11.5
DO23536
0 years, male, NA, stage:2, alive, 930 days
11.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
11.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
11.4
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.3
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
11.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.0
DO45121
0 years, male, NA, stage:3, alive, 1530 days
10.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.7
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.7
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
10.5
DO45123
0 years, female, NA, stage:2, dead, 570 days
10.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
10.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
10.3
DO50855
0 years, male, NA, stage:2, alive, 570 days
10.2
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
10.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
10.2
DO45203
0 years, female, NA, stage:2, alive, 1170 days
10.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
10.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
10.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.0
DO45111
0 years, male, NA, stage:2, alive, 1590 days
10.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
10.0
DO48760
0 years, female, NA, stage:2, alive, 690 days
10.0
DO23549
0 years, male, NA, stage:3, alive, 990 days
10.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.9
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.9
DO23531
0 years, female, NA, stage:3, alive, 900 days
9.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
9.7
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
9.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
9.7
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.6
DO23510
0 years, female, NA, stage:2, alive, 870 days
9.5
DO48743
0 years, female, NA, stage:2, alive, 570 days
9.5
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.4
DO45161
0 years, male, NA, stage:2, dead, 540 days
9.4
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.3
DO48697
0 years, female, NA, stage:2, dead, 810 days
9.3
DO45297
0 years, female, NA, stage:4, dead, 1260 days
9.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
9.3
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
9.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
9.0
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
9.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
8.9
DO48704
0 years, female, NA, stage:3, alive, 750 days
8.7
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
8.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
8.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
8.5
DO48725
0 years, male, NA, stage:1, alive, 780 days
8.5
DO48716
0 years, male, NA, stage:2, alive, 720 days
8.5
DO45267
0 years, male, NA, stage:3, dead, 570 days
8.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
8.4
DO45092
0 years, male, NA, stage:4, dead, 1200 days
8.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.3
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.3
DO23539
0 years, male, NA, stage:1, alive, 1110 days
8.1
DO23533
0 years, male, NA, stage:2, alive, 900 days
8.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
8.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
7.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
7.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
7.8
DO45169
0 years, male, NA, stage:3, alive, 1350 days
7.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
7.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.7
DO23532
0 years, female, NA, stage:1, alive, 960 days
7.6
DO45301
0 years, male, NA, stage:2, dead, 1440 days
7.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
7.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
7.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
7.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
7.3
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
7.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
7.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.2
DO227801
0 years, female, NA, stage:1, alive, 660 days
7.2
DO45179
0 years, female, NA, stage:2, alive, 600 days
7.1
DO48693
0 years, male, NA, stage:2, alive, 900 days
7.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
7.1
DO50806
0 years, male, NA, stage:4, alive, 540 days
7.1
DO50816
0 years, male, NA, stage:2, alive, 390 days
7.1
DO23516
0 years, male, NA, stage:3, dead, 20 days
6.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
6.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
6.8
DO50813
0 years, male, NA, stage:2, alive, 420 days
6.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
6.6
DO48742
0 years, male, NA, stage:2, alive, 600 days
6.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.4
DO50789
0 years, female, NA, stage:2, alive, 570 days
6.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
6.3
DO45171
0 years, male, NA, stage:3, alive, 600 days
6.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
6.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
6.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
6.1
DO23528
0 years, female, NA, stage:2, alive, 1020 days
6.0
DO48706
0 years, male, NA, stage:2, alive, 870 days
5.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
5.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
5.7
DO45195
0 years, male, NA, stage:1, alive, 390 days
5.7
DO45289
0 years, female, NA, stage:3, alive, 360 days
5.7
DO45109
0 years, male, NA, stage:2, alive, 1590 days
5.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
5.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
5.4
DO50783
0 years, male, NA, stage:3, alive, 480 days
5.2
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.1
DO23517
0 years, male, NA, stage:2, alive, 1200 days
5.1
DO45101
0 years, male, NA, stage:2, alive, 1680 days
5.0
DO45175
0 years, male, NA, stage:2, alive, 1140 days
5.0
DO50805
0 years, male, NA, stage:2, alive, 690 days
4.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
4.9
DO50817
0 years, male, NA, stage:2, alive, 390 days
4.4
DO45285
0 years, male, NA, stage:3, alive, 480 days
4.1
DO45167
0 years, male, NA, stage:2, dead, 1440 days
3.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
3.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
3.5
DO48674
0 years, male, NA, stage:2, alive, 1260 days
3.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
3.5
DO50839
0 years, female, NA, stage:3, alive, 330 days
2.9
DO50814
0 years, male, NA, stage:3, alive, 420 days
2.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
647
Tumor
2.0
487
Tumor
1.7
141
Tumor
1.6
497
Tumor
1.6
523
Tumor
1.5
943
Tumor
1.5
695
Tumor
1.5
355
Tumor
1.4
957
Tumor
1.3
953
Tumor
1.3
923
Tumor
1.3
411
Tumor
1.2
965
Tumor
1.1
743
Tumor
1.0
463
Tumor
1.0
445
Tumor
0.9
313
Tumor
0.9
277
Tumor
0.9
1031
Tumor
0.9
535
Tumor
0.8
865
Tumor
0.8
777
Tumor
0.8
883
Tumor
0.8
983
Tumor
0.8
285
Tumor
0.8
755
Tumor
0.8
351
Tumor
0.7
192
Normal
0.7
545
Tumor
0.7
727
Tumor
0.7
467
Tumor
0.7
161
Tumor
0.6
341
Tumor
0.6
493
Tumor
0.6
375
Tumor
0.6
357
Tumor
0.6
211
Tumor
0.5
473
Tumor
0.5
415
Tumor
0.5
385
Tumor
0.4
814
Normal
0.4
431
Tumor
0.4
423
Tumor
0.4
823
Tumor
0.4
536
Normal
0.4
443
Tumor
0.4
661
Tumor
0.4
425
Tumor
0.4
984
Normal
0.4
877
Tumor
0.4
715
Tumor
0.4
471
Tumor
0.4
478
Normal
0.4
975
Tumor
0.4
1013
Tumor
0.4
553
Tumor
0.4
427
Tumor
0.4
537
Tumor
0.4
498
Normal
0.4
527
Tumor
0.4
383
Tumor
0.3
413
Tumor
0.3
937
Tumor
0.3
447
Tumor
0.3
465
Tumor
0.3
297
Tumor
0.3
963
Tumor
0.3
1045
Tumor
0.3
492
Normal
0.3
573
Tumor
0.3
524
Normal
0.3
131
Tumor
0.3
873
Tumor
0.3
921
Tumor
0.3
444
Normal
0.2
223
Tumor
0.2
538
Normal
0.2
917
Tumor
0.2
744
Normal
0.2
213
Tumor
0.2
915
Tumor
0.2
125
Tumor
0.2
224
Normal
0.2
563
Tumor
0.2
384
Normal
0.2
1025
Tumor
0.2
716
Normal
0.2
785
Tumor
0.2
721
Tumor
0.2
913
Tumor
0.2
433
Tumor
0.2
958
Normal
0.2
954
Normal
0.2
852
Normal
0.2
516
Normal
0.2
491
Tumor
0.2
861
Tumor
0.2
881
Tumor
0.2
977
Tumor
0.2
311
Tumor
0.2
517
Tumor
0.2
737
Tumor
0.1
393
Tumor
0.1
331
Tumor
0.1
924
Normal
0.1
483
Tumor
0.1
1044
Normal
0.1
878
Normal
0.1
641
Tumor
0.1
966
Normal
0.1
815
Tumor
0.1
1041
Tumor
0.1
615
Tumor
0.1
146
Normal
0.1
1032
Normal
0.1
672
Normal
0.1
343
Tumor
0.1
884
Normal
0.1
817
Tumor
0.1
916
Normal
0.1
967
Tumor
0.1
635
Tumor
0.1
665
Tumor
0.1
686
Normal
0.1
1015
Tumor
0.1
818
Normal
0.1
816
Normal
0.1
137
Tumor
0.1
968
Normal
0.1
195
Tumor
0.1
663
Tumor
0.1
567
Tumor
0.0
572
Normal
0.0
978
Normal
0.0
434
Normal
0.0
976
Normal
0.0
874
Normal
0.0
1014
Normal
0.0
455
Tumor
0.0
363
Tumor
0.0
724
Normal
0.0
756
Normal
0.0
364
Normal
0.0
918
Normal
0.0
813
Tumor
0.0
367
Tumor
0.0
867
Tumor
0.0
714
Normal
0.0
488
Normal
0.0
571
Tumor
0.0
352
Normal
0.0
574
Normal
0.0
558
Normal
0.0
386
Normal
0.0
494
Normal
0.0
866
Normal
0.0
546
Normal
0.0
212
Normal
0.0
951
Tumor
0.0
617
Tumor
0.0
778
Normal
0.0
461
Tumor
0.0
126
Normal
0.0
938
Normal
0.0
257
Tumor
0.0
554
Normal
0.0
922
Normal
0.0
664
Normal
0.0
1021
Tumor
0.0
956
Normal
0.0
952
Normal
0.0
857
Tumor
-0.1
484
Normal
-0.1
882
Normal
-0.1
1028
Normal
-0.1
472
Normal
-0.1
1027
Tumor
-0.1
1022
Normal
-0.1
412
Normal
-0.1
284
Normal
-0.1
628
Normal
-0.1
1042
Normal
-0.1
738
Normal
-0.1
742
Normal
-0.1
312
Normal
-0.1
696
Normal
-0.1
858
Normal
-0.1
448
Normal
-0.1
191
Tumor
-0.1
824
Normal
-0.1
786
Normal
-0.1
982
Normal
-0.1
912
Normal
-0.1
187
Tumor
-0.1
662
Normal
-0.1
188
Normal
-0.1
477
Tumor
-0.1
851
Tumor
-0.1
685
Tumor
-0.1
474
Normal
-0.1
955
Tumor
-0.1
1026
Normal
-0.1
944
Normal
-0.2
1043
Tumor
-0.2
534
Normal
-0.2
142
Normal
-0.2
227
Tumor
-0.2
416
Normal
-0.2
362
Normal
-0.2
723
Tumor
-0.2
185
Tumor
-0.2
481
Tumor
-0.2
268
Normal
-0.2
728
Normal
-0.2
1016
Normal
-0.2
283
Tumor
-0.2
1046
Normal
-0.2
298
Normal
-0.2
396
Normal
-0.2
925
Tumor
-0.2
864
Normal
-0.2
344
Normal
-0.2
456
Normal
-0.2
342
Normal
-0.2
746
Normal
-0.2
964
Normal
-0.2
518
Normal
-0.2
911
Tumor
-0.2
528
Normal
-0.2
138
Normal
-0.2
698
Normal
-0.2
926
Normal
-0.2
421
Tumor
-0.2
514
Normal
-0.3
666
Normal
-0.3
217
Tumor
-0.3
228
Normal
-0.3
354
Normal
-0.3
267
Tumor
-0.3
462
Normal
-0.3
328
Normal
-0.3
124
Normal
-0.3
862
Normal
-0.3
387
Tumor
-0.3
557
Tumor
-0.3
366
Normal
-0.3
196
Normal
-0.3
533
Tumor
-0.3
332
Normal
-0.3
914
Normal
-0.3
564
Normal
-0.3
446
Normal
-0.3
261
Tumor
-0.3
482
Normal
-0.3
722
Normal
-0.3
353
Tumor
-0.3
648
Normal
-0.3
468
Normal
-0.4
278
Normal
-0.4
636
Normal
-0.4
356
Normal
-0.4
221
Tumor
-0.4
214
Normal
-0.4
218
Normal
-0.4
148
Normal
-0.4
981
Tumor
-0.4
466
Normal
-0.4
114
Normal
-0.4
113
Tumor
-0.4
365
Tumor
-0.4
391
Tumor
-0.4
568
Normal
-0.4
671
Tumor
-0.4
868
Normal
-0.4
526
Normal
-0.4
286
Normal
-0.4
745
Tumor
-0.4
272
Normal
-0.4
392
Normal
-0.4
525
Tumor
-0.4
424
Normal
-0.4
376
Normal
-0.4
388
Normal
-0.4
145
Tumor
-0.4
713
Tumor
-0.4
271
Tumor
-0.4
616
Normal
-0.4
135
Tumor
-0.4
112
Tumor
-0.4
618
Normal
-0.5
451
Tumor
-0.5
426
Normal
-0.5
262
Normal
-0.5
741
Tumor
-0.5
428
Normal
-0.5
863
Tumor
-0.5
358
Normal
-0.5
627
Tumor
-0.5
232
Normal
-0.5
394
Normal
-0.5
422
Normal
-0.5
464
Normal
-0.5
327
Tumor
-0.5
258
Normal
-0.5
642
Normal
-0.5
432
Normal
-0.5
128
Normal
-0.5
314
Normal
-0.5
368
Normal
-0.5
111
Normal
-0.5
186
Normal
-0.5
136
Normal
-0.6
452
Normal
-0.6
395
Tumor
-0.6
361
Tumor
-0.6
132
Normal
-0.6
436
Normal
-0.6
172
Normal
-0.6
162
Normal
-0.6
127
Tumor
-0.6
414
Normal
-0.6
222
Normal
-0.6
435
Tumor
-0.7
697
Tumor
-0.7
147
Tumor
-0.8
513
Tumor
-0.8
515
Tumor
-0.8
231
Tumor
-0.8
171
Tumor
-1.0
123
Tumor
-1.1
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
