HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:4.0 nTPM
HPA Brain:25.0 nTPM
GTEx:4.0 nTPM
FANTOM5:35.3 Scaled Tags Per Million
Pig:21.1 nTPM
Mouse:63.7 nTPM
Allen mouse:1.6 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPUS - Antibody stainingi
Antibody HPA025020
Glial cells Low
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 25.0
Sample id Sample description nTPM
Hippocampus
nTPM: 16.6
1911 Female, age 85, right hemisphere 17.5
1898 Male, age 80, left hemisphere 17.4
2529 Female, age 94, left hemisphere 16.6
2621 Female, age 67, right hemisphere 16.6
1855 Male, age 76, left hemisphere 16.2
2148 Female, age 91, left hemisphere 15.2
Dentate gyrus
nTPM: 17.4
2246 Female, age 85, both hemispheres 19.5
1927 Female, age 91, both hemispheres 18.3
2528 Male, age 74, both hemispheres 18.3
2530 Female, age 94, left hemisphere 17.6
2010 Male, age 76, both hemispheres 15.9
2531 Female, age 67, both hemispheres 14.9
Entorhinal gyrus
nTPM: 22.4
2613 Female, age 94, left hemisphere 32.1
1938 Female, age 85, left hemisphere 26.9
2764 Male, age 80, right hemisphere 19.2
1787 Male, age 76, left hemisphere 19.0
2686 Male, age 75, right hemisphere 18.8
2117 Female, age 91, right hemisphere 18.4
Hippocampus, CA1
nTPM: 17.6
2082 Female, age 91, right hemisphere 20.7
1873 Female, age 85, both hemispheres 19.9
2045 Male, age 76, both hemispheres 16.5
2527 Male, age 74, both hemispheres 16.2
2749 Male, age 80, left hemisphere 14.5
Hippocampus, CA2
nTPM: 19.1
1940 Female, age 85, left hemisphere 24.6
2113 Female, age 91, right hemisphere 21.8
1892 Male, age 76, both hemispheres 18.4
2249 Male, age 74, both hemispheres 17.3
2437 Female, age 94, left hemisphere 16.9
1963 Male, age 80, left hemisphere 16.0
Hippocampus, CA3
nTPM: 16.5
1891 Female, age 85, both hemispheres 18.7
1867 Male, age 76, both hemispheres 18.3
2436 Male, age 74, both hemispheres 16.8
2861 Female, age 67, both hemispheres 16.1
2137 Male, age 80, left hemisphere 15.3
2620 Female, age 94, left hemisphere 13.9
Parahippocampal cortex
nTPM: 20.4
1990 Female, age 91, right hemisphere 25.8
2693 Female, age 94, both hemispheres 24.7
2250 Female, age 67, right hemisphere 22.5
1933 Female, age 85, both hemispheres 22.0
1850 Male, age 80, both hemispheres 20.7
2692 Male, age 74, both hemispheres 19.1
2245 Female, age 91, both hemispheres 19.0
2018 Male, age 76, both hemispheres 17.3
2532 Female, age 72, left hemisphere 17.1
2622 Female, age 67, right hemisphere 16.1
Perirhinal gyrus
nTPM: 25.0
1847 Female, age 91, left hemisphere 27.6
2521 Female, age 94, right hemisphere 26.8
1841 Female, age 85, right hemisphere 24.3
2848 Male, age 76, right hemisphere 24.0
1794 Male, age 80, right hemisphere 22.3
Subiculum
nTPM: 19.5
1977 Female, age 85, both hemispheres 24.4
2438 Female, age 94, left hemisphere 20.4
2729 Female, age 91, right hemisphere 19.2
1901 Male, age 80, both hemispheres 18.7
2042 Male, age 76, both hemispheres 17.8
2619 Male, age 74, both hemispheres 16.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 4.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 4.0
Samples: 197

Max nTPM: 9.2
Min nTPM: 1.9
Std nTPM: 1.2
Median nTPM: 3.8
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 9.2
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 9.1
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 8.5
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 8.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 8.0
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 7.4
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 7.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 7.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 6.3
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 6.1
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 6.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 35.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 35.3
FF:10153-102I9 76 years, female 46.8
FF:10169-103B7 60 years, female 23.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 21.1
Pig sample Sample description nTPM
Subiculum
nTPM: 19.5
Samples: 4

Max nTPM: 25.5
Min nTPM: 16.8
Sample A Female 25.5
Sample B Female 17.5
Sample C Male 16.8
Sample D Male 18.3
Dorsal hippocampus
nTPM: 14.0
Samples: 4

Max nTPM: 17.1
Min nTPM: 11.4
Sample A Female 14.2
Sample B Female 11.4
Sample C Male 17.1
Sample D Male 13.1
Entorhinal cortex
nTPM: 21.1
Samples: 4

Max nTPM: 25.3
Min nTPM: 17.3
Sample A Female 19.9
Sample B Female 25.3
Sample C Male 22.0
Sample D Male 17.3
Ventral hippocampus
nTPM: 14.3
Samples: 4

Max nTPM: 17.3
Min nTPM: 11.4
Sample A Female 13.6
Sample B Female 14.8
Sample C Male 17.3
Sample D Male 11.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 63.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 63.7
Samples: 4

Max nTPM: 70.1
Min nTPM: 53.9
Sample A Male 64.1
Sample B Male 70.1
Sample C Female 53.9
Sample D Female 66.7
Hippocampal formation
nTPM: 41.8
Samples: 4

Max nTPM: 45.6
Min nTPM: 39.9
Sample A Male 45.6
Sample B Male 41.7
Sample C Female 40.0
Sample D Female 39.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.6
73592537 Antisense, RP_051017_01_F02, Mouse strain C57BL/6J (56 days, male) 1.6
69134292 Antisense, RP_050321_02_F11, Mouse strain C57BL/6J (56 days, male) 1.5

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