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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NUDT2 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
22.7
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
89.9
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
75.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
53.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
53.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
52.8
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
52.6
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
52.2
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
51.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
50.6
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
49.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
47.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
46.3
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
46.0
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
45.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
44.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
43.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
42.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
42.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
42.1
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
42.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
41.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
41.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
41.3
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
41.2
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
41.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
40.7
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
40.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
40.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
40.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
40.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
39.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
39.7
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
39.2
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
38.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
38.0
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
37.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
36.6
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
36.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
36.3
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
36.2
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
36.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
35.9
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
35.5
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
35.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
35.0
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
34.8
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
34.7
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
34.6
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
34.3
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
34.2
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
33.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
33.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
33.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
32.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
32.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
32.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
32.6
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
32.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
32.3
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
32.3
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
32.3
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
32.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
32.1
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
32.0
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
31.8
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
31.5
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
31.5
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
31.2
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
31.2
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
31.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
30.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
30.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
30.7
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
30.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
30.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
30.5
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
30.4
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
30.4
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
30.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
29.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
29.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
29.5
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
29.3
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
29.1
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
29.0
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
28.9
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
28.8
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
28.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
28.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
28.7
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
28.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
28.6
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
28.5
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
28.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
28.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
28.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
28.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
28.0
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
28.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
27.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
27.7
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
27.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
27.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
27.5
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
27.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
27.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
27.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
26.8
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
26.7
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
26.5
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
26.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
26.3
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
26.2
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
26.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
26.1
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
26.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
25.9
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
25.8
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
25.8
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
25.7
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
25.5
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
25.4
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
25.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
25.2
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
25.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
25.2
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
25.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
25.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
24.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
24.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
24.6
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
24.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
24.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
24.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
24.4
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
24.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
24.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
24.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
24.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
24.0
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
23.9
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
23.8
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
23.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
23.5
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
23.4
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
23.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
23.1
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
23.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
23.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
23.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
22.9
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
22.8
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
22.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
22.7
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
22.7
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
22.6
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
22.5
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
22.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
22.4
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
22.3
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
22.2
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
22.2
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
22.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
21.9
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
21.9
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
21.9
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
21.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
21.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
21.8
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
21.8
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
21.7
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
21.6
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
21.4
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
21.3
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
21.1
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
21.1
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
21.1
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
21.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
20.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
20.8
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
20.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
20.7
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
20.7
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
20.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
20.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
20.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
20.2
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
20.1
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
20.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
20.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
20.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
19.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
19.9
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
19.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
19.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
19.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
19.7
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
19.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
19.5
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
19.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
19.5
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
19.4
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
19.4
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
19.4
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.4
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
19.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
19.3
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
19.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
19.3
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
19.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
19.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
19.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
18.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
18.8
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
18.7
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
18.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
18.7
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
18.6
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
18.5
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
18.5
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
18.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
18.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
18.4
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
18.4
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
18.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
18.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
18.1
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
18.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
17.8
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
17.7
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
17.6
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
17.5
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
17.4
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
17.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
17.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
17.3
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
17.2
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
17.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
17.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
16.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
16.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
16.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
16.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
16.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
16.5
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
16.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
16.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
16.3
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
16.3
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
16.3
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
16.2
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
16.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
16.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
15.9
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
15.9
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
15.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
15.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
15.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
15.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
15.6
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
15.5
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
15.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
15.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
15.3
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
15.1
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
15.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
14.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
14.9
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
14.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
14.8
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
14.5
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
14.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
14.5
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
14.4
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
14.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
14.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
14.3
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
14.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
14.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
14.1
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
14.0
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
14.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
13.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
13.7
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
13.7
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
13.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
13.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
13.6
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
13.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
13.3
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.1
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
13.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
12.7
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
12.5
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
12.5
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
12.4
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.4
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
12.3
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
12.3
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
12.3
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
12.2
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
12.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
11.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.9
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
11.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
11.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
11.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.6
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
11.6
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
11.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.4
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.3
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
11.3
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
11.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.0
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
11.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
11.0
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
10.9
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
10.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
10.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
10.8
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
10.7
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
10.4
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
10.4
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
10.2
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
10.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
10.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.9
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
9.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
9.5
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
9.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
9.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
9.0
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
9.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
8.9
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
8.8
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
8.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.4
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
8.3
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
8.0
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
8.0
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
7.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
7.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
7.3
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
7.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
7.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
6.9
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
6.8
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
6.6
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
6.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
6.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.3
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
6.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
6.2
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
NUDT2 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
18.9
Number of samples
231
Samples
Sample
Description
TPM
DO48701
0 years, male, NA, stage:2, alive, 780 days
125.8
DO45299
0 years, female, NA, stage:1, alive, 1440 days
70.6
DO23525
0 years, male, NA, stage:4, alive, 1050 days
65.2
DO23519
0 years, male, NA, stage:3, alive, 630 days
64.3
DO50839
0 years, female, NA, stage:3, alive, 330 days
61.9
DO23508
0 years, female, NA, stage:2, alive, 390 days
50.1
DO48747
0 years, male, NA, stage:3, alive, 540 days
50.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
43.2
DO45303
0 years, female, NA, stage:3, alive, 990 days
40.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
39.6
DO45171
0 years, male, NA, stage:3, alive, 600 days
39.0
DO50791
0 years, female, NA, stage:1, dead, 480 days
38.4
DO23540
0 years, male, NA, stage:1, alive, 750 days
36.7
DO45259
0 years, male, NA, stage:3, alive, 330 days
36.4
DO50793
0 years, male, NA, stage:4, alive, 540 days
35.9
DO48717
0 years, male, NA, stage:4, dead, 180 days
35.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
33.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
33.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
33.3
DO48682
0 years, female, NA, stage:3, dead, 120 days
33.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
32.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
32.5
DO48737
0 years, male, NA, stage:1, alive, 720 days
32.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
31.5
DO45095
0 years, male, NA, stage:2, alive, 1620 days
31.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
30.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
30.3
DO45221
0 years, female, NA, stage:4, dead, 390 days
30.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
29.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
28.4
DO45267
0 years, male, NA, stage:3, dead, 570 days
28.2
DO50829
0 years, male, NA, stage:3, alive, 570 days
28.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
27.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
27.5
DO45209
0 years, male, NA, stage:4, alive, 1350 days
27.2
DO50816
0 years, male, NA, stage:2, alive, 390 days
26.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
26.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
26.0
DO50809
0 years, male, NA, stage:3, dead, 720 days
25.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
25.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
24.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
24.4
DO50844
0 years, male, NA, stage:4, alive, 300 days
24.3
DO45153
0 years, female, NA, stage:2, alive, 1380 days
24.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
24.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
23.8
DO48704
0 years, female, NA, stage:3, alive, 750 days
23.1
DO23521
0 years, male, NA, stage:3, alive, 1110 days
23.0
DO45253
0 years, male, NA, stage:2, alive, 870 days
22.5
DO48695
0 years, male, NA, stage:2, alive, 720 days
22.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
22.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
22.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
22.0
DO50859
0 years, male, NA, stage:2, alive, 180 days
21.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
21.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
21.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
21.3
DO50820
0 years, female, NA, stage:3, alive, 510 days
21.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
21.0
DO23526
0 years, male, NA, stage:3, alive, 1050 days
21.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
20.9
DO48672
0 years, male, NA, stage:2, alive, 450 days
20.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
20.8
DO50818
0 years, male, NA, stage:2, alive, 510 days
20.8
DO50811
0 years, male, NA, stage:1, alive, 450 days
20.7
DO45187
0 years, female, NA, stage:1, alive, 1260 days
20.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
20.5
DO48700
0 years, female, NA, stage:2, alive, 810 days
20.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
20.5
DO45145
0 years, male, NA, stage:3, dead, 60 days
20.4
DO45281
0 years, male, NA, stage:4, alive, 750 days
20.3
DO50813
0 years, male, NA, stage:2, alive, 420 days
20.2
DO23545
0 years, male, NA, stage:2, dead, 570 days
20.1
DO48679
0 years, male, NA, stage:2, alive, 1200 days
20.1
DO48743
0 years, female, NA, stage:2, alive, 570 days
20.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
20.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
19.9
DO45257
0 years, male, NA, stage:3, alive, 810 days
19.8
DO45201
0 years, male, NA, stage:1, alive, 900 days
19.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
19.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
19.3
DO45121
0 years, male, NA, stage:3, alive, 1530 days
19.2
DO23523
0 years, male, NA, stage:3, alive, 1080 days
19.1
DO45245
0 years, female, NA, stage:2, dead, 240 days
19.1
DO45179
0 years, female, NA, stage:2, alive, 600 days
19.1
DO45213
0 years, male, NA, stage:1, alive, 1200 days
19.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
18.9
DO48751
0 years, male, NA, stage:2, dead, 480 days
18.9
DO23511
0 years, female, NA, stage:3, dead, 180 days
18.8
DO45243
0 years, female, NA, stage:3, alive, 930 days
18.6
DO45249
0 years, male, NA, stage:1, alive, 630 days
18.5
DO48706
0 years, male, NA, stage:2, alive, 870 days
18.5
DO45279
0 years, male, NA, stage:3, alive, 1290 days
18.4
DO45094
0 years, male, NA, stage:3, alive, 1650 days
18.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
18.2
DO50800
0 years, male, NA, stage:2, alive, 510 days
18.1
DO50802
0 years, male, NA, stage:2, alive, 930 days
18.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
18.1
DO50807
0 years, male, NA, stage:1, alive, 540 days
18.0
DO45173
0 years, male, NA, stage:3, alive, 1170 days
17.8
DO23529
0 years, male, NA, stage:4, alive, 930 days
17.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
17.7
DO45149
0 years, female, NA, stage:2, alive, 1260 days
17.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
17.6
DO48741
0 years, male, NA, stage:3, alive, 240 days
17.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
17.5
DO23524
0 years, female, NA, stage:2, alive, 1050 days
17.4
DO45163
0 years, male, NA, stage:2, alive, 960 days
17.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
17.2
DO45107
0 years, female, NA, stage:2, alive, 1710 days
16.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
16.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
16.8
DO48721
0 years, female, NA, stage:1, alive, 900 days
16.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
16.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
16.7
DO45193
0 years, female, NA, stage:4, dead, 120 days
16.7
DO45225
0 years, male, NA, stage:1, alive, 1050 days
16.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.6
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.5
DO45131
0 years, male, NA, stage:4, dead, 360 days
16.4
DO45289
0 years, female, NA, stage:3, alive, 360 days
16.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
16.1
DO45183
0 years, female, NA, stage:2, dead, 570 days
16.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.0
DO45287
0 years, male, NA, stage:1, alive, 390 days
15.9
DO50819
0 years, female, NA, stage:2, alive, 510 days
15.8
DO50785
0 years, male, NA, stage:4, dead, 90 days
15.7
DO48725
0 years, male, NA, stage:1, alive, 780 days
15.7
DO23527
0 years, male, NA, stage:1, alive, 1050 days
15.6
DO23539
0 years, male, NA, stage:1, alive, 1110 days
15.6
DO227801
0 years, female, NA, stage:1, alive, 660 days
15.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
15.6
DO48716
0 years, male, NA, stage:2, alive, 720 days
15.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
15.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
15.4
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
14.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
14.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
14.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
14.6
DO23547
0 years, male, NA, stage:1, alive, 1020 days
14.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
14.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.4
DO45273
0 years, male, NA, stage:2, alive, 480 days
14.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
14.1
DO45191
0 years, female, NA, stage:2, alive, 1200 days
14.1
DO45159
0 years, male, NA, stage:3, alive, 1470 days
14.0
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.0
DO48761
0 years, male, NA, stage:2, alive, 870 days
14.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
13.8
DO45237
0 years, male, NA, stage:2, alive, 900 days
13.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
13.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
13.8
DO45135
0 years, male, NA, stage:1, alive, 1410 days
13.8
DO45155
0 years, male, NA, stage:2, alive, 2160 days
13.7
DO50804
0 years, male, NA, stage:2, alive, 720 days
13.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
13.3
DO23534
0 years, male, NA, stage:2, alive, 840 days
13.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
13.0
DO45177
0 years, female, NA, stage:3, alive, 1260 days
12.9
DO45119
0 years, male, NA, stage:3, dead, 510 days
12.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
12.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
12.9
DO48727
0 years, female, NA, stage:2, dead, 390 days
12.5
DO45141
0 years, male, NA, stage:2, alive, 1320 days
12.5
DO48697
0 years, female, NA, stage:2, dead, 810 days
12.5
DO45096
0 years, male, NA, stage:2, dead, 1290 days
12.2
DO23542
0 years, male, NA, stage:3, alive, 960 days
12.2
DO45169
0 years, male, NA, stage:3, alive, 1350 days
12.1
DO45207
0 years, male, NA, stage:1, alive, 1050 days
12.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
11.7
DO23512
0 years, male, NA, stage:1, alive, 1260 days
11.6
DO227643
0 years, male, NA, stage:2, alive, 1260 days
11.4
DO50857
0 years, male, NA, stage:2, alive, 210 days
11.3
DO50815
0 years, male, NA, stage:3, alive, 150 days
11.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
11.3
DO45197
0 years, male, NA, stage:2, alive, 1170 days
10.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
10.9
DO23548
0 years, female, NA, stage:1, alive, 840 days
10.9
DO45157
0 years, male, NA, stage:2, alive, 1980 days
10.8
DO45231
0 years, male, NA, stage:2, alive, 930 days
10.8
DO50778
0 years, male, NA, stage:4, alive, 630 days
10.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
10.6
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.5
DO45129
0 years, male, NA, stage:3, alive, 1470 days
10.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
10.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
10.4
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.3
DO23546
0 years, male, NA, stage:2, alive, 1050 days
10.3
DO50789
0 years, female, NA, stage:2, alive, 570 days
10.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
9.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
9.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.6
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.5
DO23550
0 years, male, NA, stage:1, alive, 990 days
9.4
DO45215
0 years, male, NA, stage:2, alive, 1170 days
9.4
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
9.3
DO45167
0 years, male, NA, stage:2, dead, 1440 days
9.3
DO45233
0 years, male, NA, stage:3, alive, 900 days
9.2
DO45219
0 years, male, NA, stage:2, alive, 1080 days
9.1
DO45137
0 years, male, NA, stage:1, alive, 1320 days
9.1
DO23538
0 years, male, NA, stage:2, alive, 450 days
9.0
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.9
DO50808
0 years, male, NA, stage:2, alive, 570 days
8.9
DO45255
0 years, male, NA, stage:3, alive, 720 days
8.9
DO45101
0 years, male, NA, stage:2, alive, 1680 days
8.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.7
DO45277
0 years, male, NA, stage:3, alive, 600 days
8.7
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
8.5
DO45105
0 years, male, NA, stage:1, alive, 1680 days
8.4
DO45223
0 years, male, NA, stage:4, alive, 1020 days
8.4
DO23517
0 years, male, NA, stage:2, alive, 1200 days
8.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
7.9
DO45227
0 years, female, NA, stage:2, alive, 1020 days
7.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
7.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
7.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
7.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.7
DO45113
0 years, male, NA, stage:3, alive, 1560 days
6.3
DO45093
0 years, male, NA, stage:2, dead, 720 days
6.2
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.8
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.8
DO48732
0 years, male, NA, stage:3, alive, 630 days
5.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
4.7
DO50832
0 years, male, NA, stage:3, alive, 90 days
4.3
DO48681
0 years, male, NA, stage:2, alive, 900 days
2.9
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
695
Tumor
1.3
1021
Tumor
1.2
573
Tumor
1.2
557
Tumor
0.9
647
Tumor
0.9
147
Tumor
0.9
171
Tumor
0.8
423
Tumor
0.8
123
Tumor
0.8
777
Tumor
0.7
131
Tumor
0.7
257
Tumor
0.7
571
Tumor
0.7
313
Tumor
0.7
227
Tumor
0.6
861
Tumor
0.6
937
Tumor
0.6
627
Tumor
0.6
515
Tumor
0.6
523
Tumor
0.6
231
Tumor
0.6
865
Tumor
0.6
487
Tumor
0.6
277
Tumor
0.6
481
Tumor
0.6
981
Tumor
0.6
965
Tumor
0.5
463
Tumor
0.5
1015
Tumor
0.5
195
Tumor
0.5
537
Tumor
0.5
953
Tumor
0.5
517
Tumor
0.5
967
Tumor
0.5
877
Tumor
0.5
161
Tumor
0.4
497
Tumor
0.4
727
Tumor
0.4
411
Tumor
0.4
881
Tumor
0.4
617
Tumor
0.4
862
Normal
0.4
724
Normal
0.4
715
Tumor
0.4
925
Tumor
0.3
427
Tumor
0.3
516
Normal
0.3
558
Normal
0.3
415
Tumor
0.3
538
Normal
0.3
392
Normal
0.3
1041
Tumor
0.3
491
Tumor
0.3
745
Tumor
0.3
741
Tumor
0.2
342
Normal
0.2
518
Normal
0.2
723
Tumor
0.2
527
Tumor
0.2
921
Tumor
0.2
137
Tumor
0.2
285
Tumor
0.2
746
Normal
0.2
685
Tumor
0.2
1027
Tumor
0.2
975
Tumor
0.2
467
Tumor
0.2
361
Tumor
0.2
416
Normal
0.2
383
Tumor
0.2
386
Normal
0.2
1031
Tumor
0.2
976
Normal
0.2
271
Tumor
0.2
785
Tumor
0.2
713
Tumor
0.2
113
Tumor
0.2
128
Normal
0.1
867
Tumor
0.1
228
Normal
0.1
327
Tumor
0.1
982
Normal
0.1
363
Tumor
0.1
258
Normal
0.1
145
Tumor
0.1
1016
Normal
0.1
917
Tumor
0.1
778
Normal
0.1
451
Tumor
0.1
465
Tumor
0.1
697
Tumor
0.1
148
Normal
0.1
431
Tumor
0.1
146
Normal
0.1
452
Normal
0.1
1022
Normal
0.1
696
Normal
0.1
952
Normal
0.1
213
Tumor
0.1
874
Normal
0.1
513
Tumor
0.1
286
Normal
0.1
915
Tumor
0.1
968
Normal
0.1
111
Normal
0.1
388
Normal
0.1
1032
Normal
0.1
114
Normal
0.1
966
Normal
0.0
851
Tumor
0.0
341
Tumor
0.0
387
Tumor
0.0
124
Normal
0.0
223
Tumor
0.0
267
Tumor
0.0
738
Normal
0.0
873
Tumor
0.0
545
Tumor
0.0
385
Tumor
0.0
424
Normal
0.0
413
Tumor
0.0
366
Normal
0.0
564
Normal
0.0
492
Normal
0.0
353
Tumor
0.0
954
Normal
0.0
742
Normal
0.0
375
Tumor
0.0
162
Normal
0.0
618
Normal
0.0
574
Normal
0.0
488
Normal
0.0
662
Normal
0.0
984
Normal
0.0
214
Normal
0.0
232
Normal
0.0
482
Normal
0.0
728
Normal
0.0
272
Normal
0.0
477
Tumor
-0.1
911
Tumor
-0.1
468
Normal
-0.1
721
Tumor
-0.1
447
Tumor
-0.1
878
Normal
-0.1
698
Normal
-0.1
1013
Tumor
-0.1
978
Normal
-0.1
528
Normal
-0.1
1042
Normal
-0.1
435
Tumor
-0.1
563
Tumor
-0.1
376
Normal
-0.1
524
Normal
-0.1
852
Normal
-0.1
786
Normal
-0.1
737
Tumor
-0.1
938
Normal
-0.1
1045
Tumor
-0.1
445
Tumor
-0.1
362
Normal
-0.1
983
Tumor
-0.1
268
Normal
-0.1
498
Normal
-0.1
464
Normal
-0.1
473
Tumor
-0.1
546
Normal
-0.1
956
Normal
-0.1
716
Normal
-0.1
628
Normal
-0.1
112
Tumor
-0.1
1025
Tumor
-0.1
355
Tumor
-0.1
172
Normal
-0.1
744
Normal
-0.1
278
Normal
-0.1
436
Normal
-0.1
813
Tumor
-0.1
412
Normal
-0.1
357
Tumor
-0.1
414
Normal
-0.1
686
Normal
-0.1
857
Tumor
-0.1
132
Normal
-0.2
977
Tumor
-0.2
918
Normal
-0.2
364
Normal
-0.2
963
Tumor
-0.2
478
Normal
-0.2
125
Tumor
-0.2
393
Tumor
-0.2
354
Normal
-0.2
944
Normal
-0.2
743
Tumor
-0.2
365
Tumor
-0.2
922
Normal
-0.2
312
Normal
-0.2
615
Tumor
-0.2
138
Normal
-0.2
391
Tumor
-0.2
261
Tumor
-0.2
311
Tumor
-0.2
212
Normal
-0.2
384
Normal
-0.2
1046
Normal
-0.2
913
Tumor
-0.2
471
Tumor
-0.2
262
Normal
-0.2
926
Normal
-0.2
924
Normal
-0.2
126
Normal
-0.2
672
Normal
-0.2
814
Normal
-0.2
472
Normal
-0.2
298
Normal
-0.2
224
Normal
-0.2
755
Tumor
-0.3
514
Normal
-0.3
428
Normal
-0.3
923
Tumor
-0.3
425
Tumor
-0.3
466
Normal
-0.3
661
Tumor
-0.3
456
Normal
-0.3
868
Normal
-0.3
663
Tumor
-0.3
882
Normal
-0.3
461
Tumor
-0.3
1028
Normal
-0.3
426
Normal
-0.3
714
Normal
-0.3
951
Tumor
-0.3
283
Tumor
-0.3
432
Normal
-0.3
526
Normal
-0.3
493
Tumor
-0.3
218
Normal
-0.3
455
Tumor
-0.3
448
Normal
-0.3
568
Normal
-0.3
186
Normal
-0.3
356
Normal
-0.3
955
Tumor
-0.3
474
Normal
-0.3
332
Normal
-0.3
331
Tumor
-0.3
141
Tumor
-0.3
916
Normal
-0.4
525
Tumor
-0.4
446
Normal
-0.4
368
Normal
-0.4
422
Normal
-0.4
572
Normal
-0.4
191
Tumor
-0.4
648
Normal
-0.4
943
Tumor
-0.4
756
Normal
-0.4
534
Normal
-0.4
217
Tumor
-0.4
188
Normal
-0.4
635
Tumor
-0.4
185
Tumor
-0.4
1043
Tumor
-0.4
666
Normal
-0.4
1026
Normal
-0.4
192
Normal
-0.4
394
Normal
-0.4
494
Normal
-0.5
863
Tumor
-0.5
462
Normal
-0.5
297
Tumor
-0.5
314
Normal
-0.5
964
Normal
-0.5
816
Normal
-0.5
883
Tumor
-0.5
284
Normal
-0.5
136
Normal
-0.5
554
Normal
-0.5
142
Normal
-0.5
396
Normal
-0.5
858
Normal
-0.5
533
Tumor
-0.5
328
Normal
-0.5
536
Normal
-0.5
665
Tumor
-0.5
358
Normal
-0.6
553
Tumor
-0.6
352
Normal
-0.6
421
Tumor
-0.6
434
Normal
-0.6
483
Tumor
-0.6
864
Normal
-0.6
187
Tumor
-0.6
567
Tumor
-0.6
344
Normal
-0.6
221
Tumor
-0.6
664
Normal
-0.6
211
Tumor
-0.6
616
Normal
-0.6
722
Normal
-0.6
815
Tumor
-0.6
957
Tumor
-0.7
884
Normal
-0.7
535
Tumor
-0.7
642
Normal
-0.7
222
Normal
-0.7
395
Tumor
-0.7
343
Tumor
-0.7
818
Normal
-0.7
433
Tumor
-0.7
484
Normal
-0.7
958
Normal
-0.7
1014
Normal
-0.7
196
Normal
-0.7
823
Tumor
-0.7
671
Tumor
-0.8
912
Normal
-0.8
1044
Normal
-0.8
824
Normal
-0.8
367
Tumor
-0.8
914
Normal
-0.8
636
Normal
-0.8
866
Normal
-0.8
127
Tumor
-0.9
817
Tumor
-0.9
351
Tumor
-1.0
135
Tumor
-1.0
641
Tumor
-1.1
444
Normal
-1.4
443
Tumor
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
