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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
RPP25L is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
35.8
Number of samples
362
Samples
Sample
Description
TPM
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
107.1
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
92.2
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
90.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
86.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
80.4
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
77.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
77.1
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
67.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
66.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
66.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
65.4
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
65.2
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
64.8
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
64.2
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
61.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
61.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
61.0
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
59.4
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
58.8
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
58.6
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
58.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
57.8
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
57.6
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
57.6
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
57.5
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
57.5
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
56.3
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
56.2
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
55.9
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
55.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
55.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
55.2
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
54.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
54.5
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
54.4
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
54.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
53.8
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
53.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
53.5
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
53.5
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
53.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
53.4
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
51.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
51.5
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
51.3
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
51.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
51.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
50.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
50.7
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
50.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
50.5
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
50.4
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
50.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
50.3
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
50.2
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
50.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
49.6
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
49.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
49.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
49.0
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
48.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
48.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
48.5
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
48.3
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
47.8
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
47.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
46.9
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
46.8
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
46.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
46.6
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
46.4
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
46.0
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
45.8
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
45.8
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
45.6
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
45.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
44.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
44.5
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
44.4
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
44.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
44.0
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
44.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
43.9
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
43.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
43.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
43.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
43.4
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
43.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
43.2
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
43.0
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
43.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
42.9
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
42.9
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
42.5
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
42.5
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
42.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
42.4
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
42.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
41.9
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
41.8
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
41.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
41.5
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
41.5
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
41.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
41.0
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
40.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
40.7
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
40.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
40.1
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
39.8
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
39.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
39.7
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
39.7
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
39.6
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
39.6
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
39.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
39.4
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
39.3
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
39.3
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
39.2
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
39.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
39.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
38.9
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
38.5
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
38.4
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
38.4
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
38.3
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
38.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
38.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
38.2
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
38.1
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
38.0
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
38.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
38.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
37.8
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
37.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
37.7
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
37.7
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
37.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
37.4
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
37.3
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
37.2
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
37.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
37.1
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
36.9
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
36.8
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
36.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
36.7
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
36.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
36.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
36.2
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
35.8
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
35.8
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
35.8
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
35.7
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
35.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
35.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
35.5
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
35.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
35.4
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
35.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
35.4
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
35.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
35.3
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
35.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
35.3
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
35.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
35.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
35.0
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
34.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
34.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
34.8
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
34.8
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
34.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
34.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
34.7
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
34.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
34.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
34.5
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
34.3
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
34.3
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
34.3
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
34.1
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
34.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
33.9
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
33.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
33.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
33.6
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
33.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
33.5
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
33.5
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
33.4
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
33.3
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
33.3
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
33.3
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
33.2
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
33.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
33.1
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
33.1
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
33.0
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
32.9
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
32.9
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
32.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
32.7
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
32.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
32.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
32.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
32.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
32.4
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
32.3
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
32.3
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
32.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
32.2
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
32.2
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
32.1
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
32.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
31.9
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
31.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
31.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
31.6
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
31.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
31.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
31.3
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
31.3
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
31.2
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
31.1
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
30.9
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
30.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
30.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
30.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
30.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
30.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
30.4
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
30.3
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
30.3
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
30.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
29.7
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
29.7
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
29.5
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
29.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
29.4
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
29.4
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
29.4
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
29.4
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
29.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
29.1
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
29.1
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
29.1
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
29.1
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
28.9
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
28.8
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
28.7
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
28.7
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
28.6
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
28.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
28.4
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
28.2
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
28.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
28.0
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
27.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
27.3
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
27.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
27.2
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
27.1
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
27.1
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
27.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
27.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
26.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
26.8
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
26.8
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
26.7
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
26.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
26.4
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
26.4
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
26.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
26.2
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
25.9
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
25.8
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
25.8
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
25.8
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
25.7
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
25.6
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
25.5
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
25.5
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
25.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
25.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
24.9
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
24.9
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
24.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
24.7
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
24.5
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
24.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
24.3
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
24.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
24.2
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
24.0
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
24.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
23.9
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
23.9
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
23.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
23.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
23.7
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
23.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
22.8
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
22.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
22.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
22.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
22.6
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
22.5
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
22.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
22.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
22.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
22.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
22.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
21.9
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
21.8
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
21.7
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
21.7
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
21.2
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
21.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
20.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
20.5
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
20.2
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
20.1
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
20.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
19.7
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
19.5
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
18.7
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
18.5
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
18.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
18.2
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
18.0
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
17.9
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
17.7
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
17.7
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
17.7
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
16.8
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
16.6
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
16.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.0
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
15.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
15.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
15.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
15.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
15.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
15.0
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
13.7
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
13.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
13.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
13.2
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
13.0
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
13.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
12.9
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
12.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
11.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
11.5
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
11.3
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
11.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
10.7
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.5
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Survival analysis data not available.
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
0.9
137
Tumor
0.8
353
Tumor
0.8
937
Tumor
0.8
331
Tumor
0.8
473
Tumor
0.7
411
Tumor
0.7
497
Tumor
0.7
267
Tumor
0.7
141
Tumor
0.7
285
Tumor
0.7
355
Tumor
0.6
135
Tumor
0.6
358
Normal
0.6
271
Tumor
0.6
136
Normal
0.6
1041
Tumor
0.6
1025
Tumor
0.6
227
Tumor
0.6
627
Tumor
0.6
493
Tumor
0.6
951
Tumor
0.6
131
Tumor
0.5
387
Tumor
0.5
513
Tumor
0.5
462
Normal
0.5
272
Normal
0.5
967
Tumor
0.5
232
Normal
0.5
431
Tumor
0.5
342
Normal
0.5
354
Normal
0.5
351
Tumor
0.5
416
Normal
0.5
112
Tumor
0.5
443
Tumor
0.5
297
Tumor
0.4
123
Tumor
0.4
298
Normal
0.4
277
Tumor
0.4
425
Tumor
0.4
132
Normal
0.4
436
Normal
0.4
433
Tumor
0.4
278
Normal
0.4
463
Tumor
0.4
258
Normal
0.4
483
Tumor
0.4
777
Tumor
0.4
314
Normal
0.4
415
Tumor
0.4
412
Normal
0.4
1021
Tumor
0.4
727
Tumor
0.4
571
Tumor
0.4
452
Normal
0.3
737
Tumor
0.3
648
Normal
0.3
427
Tumor
0.3
724
Normal
0.3
965
Tumor
0.3
312
Normal
0.3
352
Normal
0.3
698
Normal
0.3
663
Tumor
0.3
481
Tumor
0.3
741
Tumor
0.3
983
Tumor
0.3
1031
Tumor
0.3
925
Tumor
0.3
487
Tumor
0.3
1013
Tumor
0.3
171
Tumor
0.3
363
Tumor
0.3
742
Normal
0.3
484
Normal
0.3
494
Normal
0.3
344
Normal
0.3
262
Normal
0.3
516
Normal
0.3
535
Tumor
0.3
1014
Normal
0.2
332
Normal
0.2
413
Tumor
0.2
738
Normal
0.2
915
Tumor
0.2
448
Normal
0.2
341
Tumor
0.2
423
Tumor
0.2
954
Normal
0.2
327
Tumor
0.2
432
Normal
0.2
515
Tumor
0.2
526
Normal
0.2
615
Tumor
0.2
257
Tumor
0.2
518
Normal
0.2
527
Tumor
0.2
537
Tumor
0.2
924
Normal
0.2
114
Normal
0.2
356
Normal
0.2
428
Normal
0.2
1026
Normal
0.2
728
Normal
0.2
938
Normal
0.2
865
Tumor
0.2
464
Normal
0.2
127
Tumor
0.2
471
Tumor
0.2
955
Tumor
0.2
858
Normal
0.2
488
Normal
0.2
213
Tumor
0.2
388
Normal
0.2
113
Tumor
0.2
328
Normal
0.1
478
Normal
0.1
1042
Normal
0.1
1044
Normal
0.1
424
Normal
0.1
756
Normal
0.1
126
Normal
0.1
635
Tumor
0.1
567
Tumor
0.1
414
Normal
0.1
862
Normal
0.1
445
Tumor
0.1
222
Normal
0.1
662
Normal
0.1
695
Tumor
0.1
545
Tumor
0.1
467
Tumor
0.1
435
Tumor
0.1
357
Tumor
0.1
124
Normal
0.1
1046
Normal
0.1
913
Tumor
0.1
661
Tumor
0.1
568
Normal
0.1
944
Normal
0.1
665
Tumor
0.1
553
Tumor
0.1
647
Tumor
0.1
422
Normal
0.1
375
Tumor
0.1
392
Normal
0.1
446
Normal
0.1
981
Tumor
0.1
911
Tumor
0.1
365
Tumor
0.1
231
Tumor
0.1
223
Tumor
0.1
564
Normal
0.1
785
Tumor
0.1
128
Normal
0.1
671
Tumor
0.1
161
Tumor
0.1
125
Tumor
0.1
214
Normal
0.1
755
Tumor
0.1
145
Tumor
0.1
196
Normal
0.1
218
Normal
0.1
723
Tumor
0.1
744
Normal
0.1
394
Normal
0.1
873
Tumor
0.0
926
Normal
0.0
221
Tumor
0.0
574
Normal
0.0
672
Normal
0.0
868
Normal
0.0
523
Tumor
0.0
492
Normal
0.0
573
Tumor
0.0
477
Tumor
0.0
482
Normal
0.0
451
Tumor
0.0
918
Normal
0.0
391
Tumor
0.0
1045
Tumor
0.0
1015
Tumor
0.0
952
Normal
0.0
426
Normal
0.0
964
Normal
0.0
664
Normal
0.0
563
Tumor
0.0
268
Normal
0.0
746
Normal
0.0
1032
Normal
0.0
261
Tumor
0.0
975
Tumor
0.0
572
Normal
0.0
514
Normal
0.0
461
Tumor
0.0
778
Normal
0.0
111
Normal
0.0
474
Normal
0.0
877
Tumor
0.0
786
Normal
0.0
434
Normal
0.0
1027
Tumor
0.0
466
Normal
0.0
286
Normal
0.0
864
Normal
0.0
914
Normal
0.0
383
Tumor
0.0
883
Tumor
0.0
978
Normal
0.0
641
Tumor
0.0
311
Tumor
0.0
313
Tumor
0.0
1028
Normal
0.0
455
Tumor
0.0
685
Tumor
0.0
456
Normal
0.0
554
Normal
-0.1
1022
Normal
-0.1
534
Normal
-0.1
468
Normal
-0.1
867
Tumor
-0.1
642
Normal
-0.1
142
Normal
-0.1
953
Tumor
-0.1
721
Tumor
-0.1
396
Normal
-0.1
533
Tumor
-0.1
881
Tumor
-0.1
977
Tumor
-0.1
957
Tumor
-0.1
421
Tumor
-0.1
958
Normal
-0.1
192
Normal
-0.1
1016
Normal
-0.1
517
Tumor
-0.1
444
Normal
-0.1
714
Normal
-0.1
148
Normal
-0.1
146
Normal
-0.1
386
Normal
-0.1
187
Tumor
-0.1
558
Normal
-0.1
395
Tumor
-0.1
923
Tumor
-0.1
922
Normal
-0.1
185
Tumor
-0.1
195
Tumor
-0.1
162
Normal
-0.1
697
Tumor
-0.1
217
Tumor
-0.2
866
Normal
-0.2
546
Normal
-0.2
912
Normal
-0.2
874
Normal
-0.2
956
Normal
-0.2
228
Normal
-0.2
618
Normal
-0.2
976
Normal
-0.2
916
Normal
-0.2
921
Tumor
-0.2
982
Normal
-0.2
138
Normal
-0.2
147
Tumor
-0.2
968
Normal
-0.2
817
Tumor
-0.2
536
Normal
-0.2
963
Tumor
-0.2
745
Tumor
-0.2
465
Tumor
-0.2
863
Tumor
-0.2
557
Tumor
-0.2
722
Normal
-0.2
172
Normal
-0.2
878
Normal
-0.2
361
Tumor
-0.2
191
Tumor
-0.2
823
Tumor
-0.2
696
Normal
-0.2
713
Tumor
-0.2
984
Normal
-0.2
617
Tumor
-0.2
966
Normal
-0.2
813
Tumor
-0.2
814
Normal
-0.2
367
Tumor
-0.2
385
Tumor
-0.2
447
Tumor
-0.2
882
Normal
-0.3
186
Normal
-0.3
284
Normal
-0.3
666
Normal
-0.3
861
Tumor
-0.3
212
Normal
-0.3
636
Normal
-0.3
393
Tumor
-0.3
716
Normal
-0.3
715
Tumor
-0.3
528
Normal
-0.3
852
Normal
-0.3
1043
Tumor
-0.4
188
Normal
-0.4
472
Normal
-0.4
824
Normal
-0.4
628
Normal
-0.4
376
Normal
-0.4
818
Normal
-0.4
884
Normal
-0.5
524
Normal
-0.5
538
Normal
-0.5
491
Tumor
-0.5
343
Tumor
-0.5
851
Tumor
-0.5
917
Tumor
-0.5
686
Normal
-0.5
362
Normal
-0.5
368
Normal
-0.6
943
Tumor
-0.6
366
Normal
-0.6
525
Tumor
-0.6
224
Normal
-0.6
498
Normal
-0.6
384
Normal
-0.7
616
Normal
-0.7
815
Tumor
-0.7
857
Tumor
-0.8
283
Tumor
-0.8
364
Normal
-0.9
816
Normal
-0.9
211
Tumor
-1.4
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
