We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
INTS8 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
6.3
Number of samples
362
Samples
Sample
Description
TPM
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
31.4
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
30.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
24.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
20.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
20.5
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
19.8
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
19.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
19.3
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
19.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
17.9
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
17.1
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
17.0
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
16.6
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
16.5
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
16.2
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
15.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
15.7
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
15.1
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
15.0
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
15.0
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
14.7
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
14.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
14.0
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
13.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
13.7
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
13.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
13.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
13.4
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.3
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
13.2
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
13.0
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
12.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
12.2
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
12.1
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
12.0
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
12.0
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
11.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
11.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
11.3
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
11.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
11.0
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
10.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
10.9
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
10.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
10.8
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
10.8
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
10.7
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
10.6
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
10.5
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
10.4
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
9.9
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
9.8
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
9.8
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
9.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.6
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
9.5
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
9.5
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
9.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
9.5
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
9.4
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
9.4
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
9.3
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
9.2
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
9.2
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
9.2
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
9.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
9.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
9.0
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
9.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
9.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
9.0
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
9.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
8.9
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
8.9
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
8.8
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
8.8
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
8.6
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
8.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
8.6
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
8.6
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
8.6
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
8.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
8.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
8.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
8.3
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
8.3
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
8.3
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
8.3
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
8.1
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
8.1
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
8.0
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
8.0
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
7.9
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
7.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
7.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
7.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
7.7
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
7.7
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
7.6
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
7.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
7.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
7.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
7.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
7.3
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
7.2
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
7.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
7.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
7.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
7.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
6.9
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
6.8
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
6.8
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
6.8
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
6.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
6.6
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
6.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
6.6
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
6.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
6.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
6.5
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
6.4
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
6.4
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
6.3
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
6.3
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
6.3
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
6.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
6.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
6.2
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
6.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
6.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
6.1
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
6.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
6.1
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
6.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
6.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
6.0
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.0
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
6.0
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
5.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
5.9
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
5.9
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
5.9
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
5.9
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
5.9
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
5.8
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
5.8
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
5.8
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
5.8
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
5.7
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
5.7
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
5.7
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
5.7
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
5.6
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
5.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
5.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
5.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
5.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
5.5
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
5.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
5.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
5.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
5.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
5.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
5.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
5.2
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
5.2
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
5.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
5.2
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
5.1
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
5.1
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
5.1
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
5.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
5.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
5.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
5.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
5.1
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
5.1
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
5.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
5.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
5.0
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
5.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
5.0
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
5.0
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
5.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
5.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
4.9
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
4.9
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
4.9
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
4.9
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.9
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.8
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
4.8
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
4.8
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
4.8
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
4.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
4.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
4.7
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
4.7
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
4.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
4.6
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
4.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
4.6
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
4.6
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
4.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
4.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
4.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
4.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
4.5
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
4.5
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.5
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
4.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
4.4
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
4.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
4.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
4.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
4.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
4.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
4.4
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
4.4
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
4.3
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
4.3
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
4.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
4.3
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
4.3
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
4.2
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
4.1
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
4.1
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
4.1
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
4.1
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
4.0
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.0
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
4.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
4.0
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
4.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
3.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
3.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
3.9
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
3.9
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
3.9
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.9
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
3.9
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
3.8
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
3.8
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
3.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
3.8
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
3.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
3.8
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
3.8
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
3.8
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.7
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
3.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
3.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
3.7
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
3.7
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
3.7
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
3.7
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
3.7
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
3.7
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
3.7
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
3.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
3.6
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
3.6
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
3.6
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
3.6
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
3.6
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
3.6
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
3.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
3.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
3.5
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
3.5
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
3.5
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
3.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.4
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
3.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
3.4
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
3.4
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
3.3
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
3.3
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
3.3
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
3.3
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
3.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
3.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
3.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
3.2
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
3.2
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
3.2
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
3.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
3.2
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
3.1
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
3.1
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
3.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
3.1
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
3.1
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
3.0
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
3.0
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
3.0
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
2.9
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
2.9
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
2.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
2.9
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
2.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
2.8
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
2.8
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
2.8
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
2.8
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.8
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
2.8
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
2.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
2.7
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
2.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
2.7
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
2.7
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
2.7
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
2.6
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
2.6
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
2.6
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
2.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
2.6
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
2.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
2.5
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
2.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
2.5
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
2.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
2.5
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
2.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
2.4
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
2.4
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
2.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
2.3
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
2.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
2.3
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
2.3
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
2.3
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
2.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
2.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
2.2
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
2.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
2.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
2.1
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
2.1
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
2.0
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
2.0
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
1.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
1.9
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
1.8
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
1.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
1.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
1.6
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1.6
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
1.6
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
1.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
1.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
1.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
1.3
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.2
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
1.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
1.0
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
INTS8 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
12.3
Number of samples
231
Samples
Sample
Description
TPM
DO23519
0 years, male, NA, stage:3, alive, 630 days
38.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
33.2
DO45145
0 years, male, NA, stage:3, dead, 60 days
30.7
DO45279
0 years, male, NA, stage:3, alive, 1290 days
30.7
DO45273
0 years, male, NA, stage:2, alive, 480 days
29.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
28.7
DO45165
0 years, male, NA, stage:2, alive, 690 days
27.7
DO48672
0 years, male, NA, stage:2, alive, 450 days
26.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
25.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
24.4
DO45185
0 years, male, NA, stage:2, alive, 600 days
23.9
DO45251
0 years, female, NA, stage:2, alive, 900 days
23.3
DO45299
0 years, female, NA, stage:1, alive, 1440 days
23.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
22.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
22.6
DO45239
0 years, male, NA, stage:2, alive, 870 days
22.5
DO23521
0 years, male, NA, stage:3, alive, 1110 days
22.0
DO45205
0 years, female, NA, stage:2, dead, 90 days
22.0
DO50806
0 years, male, NA, stage:4, alive, 540 days
21.1
DO45241
0 years, male, NA, stage:1, alive, 1080 days
21.1
DO23525
0 years, male, NA, stage:4, alive, 1050 days
21.0
DO45263
0 years, male, NA, stage:3, dead, 270 days
20.9
DO23510
0 years, female, NA, stage:2, alive, 870 days
20.7
DO50829
0 years, male, NA, stage:3, alive, 570 days
20.7
DO45253
0 years, male, NA, stage:2, alive, 870 days
20.0
DO48697
0 years, female, NA, stage:2, dead, 810 days
19.6
DO50785
0 years, male, NA, stage:4, dead, 90 days
19.4
DO50859
0 years, male, NA, stage:2, alive, 180 days
19.3
DO23526
0 years, male, NA, stage:3, alive, 1050 days
19.2
DO45275
0 years, male, NA, stage:3, dead, 10 days
19.1
DO45217
0 years, female, NA, stage:3, dead, 270 days
18.9
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.8
DO45287
0 years, male, NA, stage:1, alive, 390 days
18.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
18.7
DO23533
0 years, male, NA, stage:2, alive, 900 days
18.6
DO48717
0 years, male, NA, stage:4, dead, 180 days
18.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
18.2
DO45121
0 years, male, NA, stage:3, alive, 1530 days
18.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
17.9
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.8
DO45297
0 years, female, NA, stage:4, dead, 1260 days
17.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
17.5
DO48747
0 years, male, NA, stage:3, alive, 540 days
17.5
DO45243
0 years, female, NA, stage:3, alive, 930 days
17.4
DO50778
0 years, male, NA, stage:4, alive, 630 days
17.4
DO50815
0 years, male, NA, stage:3, alive, 150 days
17.3
DO45245
0 years, female, NA, stage:2, dead, 240 days
17.2
DO45097
0 years, male, NA, stage:3, alive, 1620 days
17.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
17.0
DO48723
0 years, male, NA, stage:1, alive, 600 days
16.7
DO45093
0 years, male, NA, stage:2, dead, 720 days
16.7
DO45163
0 years, male, NA, stage:2, alive, 960 days
16.6
DO23516
0 years, male, NA, stage:3, dead, 20 days
16.5
DO45277
0 years, male, NA, stage:3, alive, 600 days
16.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
16.4
DO45247
0 years, female, NA, stage:2, alive, 210 days
16.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
16.1
DO23513
0 years, male, NA, stage:3, alive, 1200 days
15.9
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
15.4
DO45095
0 years, male, NA, stage:2, alive, 1620 days
15.2
DO23543
0 years, male, NA, stage:2, alive, 1020 days
15.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
14.9
DO50791
0 years, female, NA, stage:1, dead, 480 days
14.9
DO48700
0 years, female, NA, stage:2, alive, 810 days
14.8
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
14.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
14.5
DO50850
0 years, male, NA, stage:3, alive, 720 days
14.4
DO45119
0 years, male, NA, stage:3, dead, 510 days
14.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
14.4
DO45127
0 years, male, NA, stage:3, dead, 420 days
14.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
14.4
DO45283
0 years, male, NA, stage:3, alive, 510 days
14.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
14.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
14.1
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.0
DO23542
0 years, male, NA, stage:3, alive, 960 days
13.9
DO45173
0 years, male, NA, stage:3, alive, 1170 days
13.8
DO45199
0 years, female, NA, stage:2, alive, 1350 days
13.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
13.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
13.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
13.7
DO48704
0 years, female, NA, stage:3, alive, 750 days
13.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
13.4
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
13.2
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.2
DO45171
0 years, male, NA, stage:3, alive, 600 days
13.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
13.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.1
DO45091
0 years, male, NA, stage:2, dead, 1320 days
13.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
12.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
12.8
DO23549
0 years, male, NA, stage:3, alive, 990 days
12.8
DO45265
0 years, male, NA, stage:3, alive, 1020 days
12.8
DO45289
0 years, female, NA, stage:3, alive, 360 days
12.7
DO50814
0 years, male, NA, stage:3, alive, 420 days
12.6
DO23535
0 years, male, NA, stage:1, alive, 960 days
12.4
DO45159
0 years, male, NA, stage:3, alive, 1470 days
12.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
12.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.3
DO45231
0 years, male, NA, stage:2, alive, 930 days
12.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
12.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
12.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
12.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
12.0
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.0
DO45137
0 years, male, NA, stage:1, alive, 1320 days
12.0
DO48730
0 years, female, NA, stage:2, alive, 630 days
12.0
DO45131
0 years, male, NA, stage:4, dead, 360 days
11.8
DO50855
0 years, male, NA, stage:2, alive, 570 days
11.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
11.7
DO45257
0 years, male, NA, stage:3, alive, 810 days
11.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
11.7
DO23514
0 years, male, NA, stage:2, alive, 1290 days
11.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
11.5
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.4
DO50803
0 years, female, NA, stage:1, alive, 540 days
11.4
DO45157
0 years, male, NA, stage:2, alive, 1980 days
11.4
DO48682
0 years, female, NA, stage:3, dead, 120 days
11.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
11.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
11.2
DO45237
0 years, male, NA, stage:2, alive, 900 days
11.1
DO45092
0 years, male, NA, stage:4, dead, 1200 days
11.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
11.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
11.1
DO45153
0 years, female, NA, stage:2, alive, 1380 days
10.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
10.9
DO45099
0 years, male, NA, stage:3, alive, 1590 days
10.8
DO23552
0 years, female, NA, stage:1, alive, 810 days
10.7
DO45141
0 years, male, NA, stage:2, alive, 1320 days
10.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
10.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
10.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
10.5
DO45249
0 years, male, NA, stage:1, alive, 630 days
10.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
10.4
DO45183
0 years, female, NA, stage:2, dead, 570 days
10.2
DO45133
0 years, male, NA, stage:3, dead, 660 days
10.2
DO48725
0 years, male, NA, stage:1, alive, 780 days
10.2
DO23541
0 years, male, NA, stage:2, alive, 930 days
10.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
10.0
DO48721
0 years, female, NA, stage:1, alive, 900 days
9.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
9.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.8
DO48741
0 years, male, NA, stage:3, alive, 240 days
9.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
9.5
DO23537
0 years, male, NA, stage:2, dead, 900 days
9.5
DO48757
0 years, female, NA, stage:3, alive, 480 days
9.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
9.5
DO23511
0 years, female, NA, stage:3, dead, 180 days
9.4
DO45201
0 years, male, NA, stage:1, alive, 900 days
9.3
DO48751
0 years, male, NA, stage:2, dead, 480 days
9.3
DO23532
0 years, female, NA, stage:1, alive, 960 days
9.0
DO50793
0 years, male, NA, stage:4, alive, 540 days
8.9
DO23515
0 years, male, NA, stage:2, alive, 1230 days
8.9
DO45235
0 years, female, NA, stage:1, alive, 900 days
8.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
8.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
8.6
DO50774
0 years, female, NA, stage:2, alive, 720 days
8.5
DO45117
0 years, female, NA, stage:2, dead, 1110 days
8.4
DO50840
0 years, male, NA, stage:2, alive, 330 days
8.4
DO45107
0 years, female, NA, stage:2, alive, 1710 days
8.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
8.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
8.3
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
8.1
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.0
DO45281
0 years, male, NA, stage:4, alive, 750 days
8.0
DO23509
0 years, male, NA, stage:3, dead, 780 days
7.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
7.9
DO45125
0 years, male, NA, stage:3, alive, 1680 days
7.7
DO23539
0 years, male, NA, stage:1, alive, 1110 days
7.7
DO50820
0 years, female, NA, stage:3, alive, 510 days
7.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
7.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
7.5
DO23545
0 years, male, NA, stage:2, dead, 570 days
7.4
DO23508
0 years, female, NA, stage:2, alive, 390 days
7.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
7.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
7.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
7.1
DO23527
0 years, male, NA, stage:1, alive, 1050 days
7.0
DO48727
0 years, female, NA, stage:2, dead, 390 days
6.9
DO23534
0 years, male, NA, stage:2, alive, 840 days
6.9
DO23518
0 years, male, NA, stage:2, alive, 1320 days
6.8
DO50802
0 years, male, NA, stage:2, alive, 930 days
6.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
6.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
6.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.6
DO50817
0 years, male, NA, stage:2, alive, 390 days
6.6
DO48693
0 years, male, NA, stage:2, alive, 900 days
6.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
6.4
DO45229
0 years, male, NA, stage:1, alive, 990 days
6.4
DO48761
0 years, male, NA, stage:2, alive, 870 days
6.2
DO45261
0 years, male, NA, stage:3, alive, 990 days
6.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
6.1
DO50857
0 years, male, NA, stage:2, alive, 210 days
6.0
DO50787
0 years, male, NA, stage:3, alive, 480 days
6.0
DO50813
0 years, male, NA, stage:2, alive, 420 days
5.9
DO48681
0 years, male, NA, stage:2, alive, 900 days
5.8
DO48712
0 years, male, NA, stage:2, alive, 810 days
5.7
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.7
DO45255
0 years, male, NA, stage:3, alive, 720 days
5.7
DO50818
0 years, male, NA, stage:2, alive, 510 days
5.7
DO48695
0 years, male, NA, stage:2, alive, 720 days
5.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.6
DO50776
0 years, male, NA, stage:1, alive, 690 days
5.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
5.6
DO45096
0 years, male, NA, stage:2, dead, 1290 days
5.5
DO23531
0 years, female, NA, stage:3, alive, 900 days
5.5
DO50808
0 years, male, NA, stage:2, alive, 570 days
5.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
5.3
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.1
DO50789
0 years, female, NA, stage:2, alive, 570 days
5.0
DO23538
0 years, male, NA, stage:2, alive, 450 days
4.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
4.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
4.8
DO45215
0 years, male, NA, stage:2, alive, 1170 days
4.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
4.8
DO45109
0 years, male, NA, stage:2, alive, 1590 days
4.7
DO48759
0 years, male, NA, stage:3, alive, 720 days
4.7
DO45179
0 years, female, NA, stage:2, alive, 600 days
4.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
3.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
3.8
DO45111
0 years, male, NA, stage:2, alive, 1590 days
3.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
3.5
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.5
DO48760
0 years, female, NA, stage:2, alive, 690 days
3.5
DO23544
0 years, male, NA, stage:2, alive, 960 days
3.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
2.9
DO48674
0 years, male, NA, stage:2, alive, 1260 days
2.8
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
951
Tumor
0.8
743
Tumor
0.8
865
Tumor
0.7
685
Tumor
0.6
957
Tumor
0.6
937
Tumor
0.6
877
Tumor
0.6
131
Tumor
0.6
1031
Tumor
0.6
1013
Tumor
0.6
965
Tumor
0.6
411
Tumor
0.6
967
Tumor
0.5
491
Tumor
0.5
211
Tumor
0.5
331
Tumor
0.5
385
Tumor
0.5
1025
Tumor
0.5
351
Tumor
0.5
313
Tumor
0.5
483
Tumor
0.5
545
Tumor
0.5
881
Tumor
0.4
341
Tumor
0.4
354
Normal
0.4
618
Normal
0.4
343
Tumor
0.4
1021
Tumor
0.4
431
Tumor
0.4
473
Tumor
0.4
227
Tumor
0.4
277
Tumor
0.4
271
Tumor
0.4
357
Tumor
0.4
527
Tumor
0.4
523
Tumor
0.3
943
Tumor
0.3
665
Tumor
0.3
427
Tumor
0.3
497
Tumor
0.3
395
Tumor
0.3
671
Tumor
0.3
515
Tumor
0.3
921
Tumor
0.3
573
Tumor
0.3
983
Tumor
0.3
1015
Tumor
0.3
815
Tumor
0.3
663
Tumor
0.3
358
Normal
0.3
737
Tumor
0.3
471
Tumor
0.3
147
Tumor
0.3
375
Tumor
0.3
823
Tumor
0.3
817
Tumor
0.3
297
Tumor
0.3
221
Tumor
0.3
721
Tumor
0.3
975
Tumor
0.3
647
Tumor
0.2
727
Tumor
0.2
267
Tumor
0.2
285
Tumor
0.2
686
Normal
0.2
355
Tumor
0.2
353
Tumor
0.2
493
Tumor
0.2
777
Tumor
0.2
977
Tumor
0.2
917
Tumor
0.2
388
Normal
0.2
467
Tumor
0.2
393
Tumor
0.2
963
Tumor
0.2
1042
Normal
0.2
722
Normal
0.2
447
Tumor
0.2
536
Normal
0.2
394
Normal
0.2
342
Normal
0.2
984
Normal
0.2
724
Normal
0.2
435
Tumor
0.2
344
Normal
0.2
953
Tumor
0.2
697
Tumor
0.2
283
Tumor
0.2
424
Normal
0.2
428
Normal
0.2
873
Tumor
0.2
966
Normal
0.2
352
Normal
0.2
915
Tumor
0.2
443
Tumor
0.2
314
Normal
0.2
113
Tumor
0.1
648
Normal
0.1
978
Normal
0.1
662
Normal
0.1
925
Tumor
0.1
444
Normal
0.1
492
Normal
0.1
1027
Tumor
0.1
363
Tumor
0.1
923
Tumor
0.1
535
Tumor
0.1
813
Tumor
0.1
187
Tumor
0.1
257
Tumor
0.1
432
Normal
0.1
425
Tumor
0.1
161
Tumor
0.1
391
Tumor
0.1
413
Tumor
0.1
223
Tumor
0.1
261
Tumor
0.1
392
Normal
0.1
461
Tumor
0.1
1043
Tumor
0.1
327
Tumor
0.1
883
Tumor
0.1
1014
Normal
0.1
463
Tumor
0.1
938
Normal
0.1
125
Tumor
0.1
433
Tumor
0.1
954
Normal
0.1
422
Normal
0.1
553
Tumor
0.1
517
Tumor
0.1
386
Normal
0.1
145
Tumor
0.1
446
Normal
0.1
1016
Normal
0.1
537
Tumor
0.1
127
Tumor
0.1
1032
Normal
0.1
396
Normal
0.1
137
Tumor
0.1
455
Tumor
0.1
533
Tumor
0.1
976
Normal
0.1
944
Normal
0.0
367
Tumor
0.0
426
Normal
0.0
516
Normal
0.0
916
Normal
0.0
914
Normal
0.0
615
Tumor
0.0
1041
Tumor
0.0
112
Tumor
0.0
574
Normal
0.0
445
Tumor
0.0
387
Tumor
0.0
487
Tumor
0.0
414
Normal
0.0
913
Tumor
0.0
135
Tumor
0.0
436
Normal
0.0
964
Normal
0.0
912
Normal
0.0
572
Normal
0.0
188
Normal
0.0
332
Normal
0.0
311
Tumor
0.0
1026
Normal
0.0
926
Normal
0.0
664
Normal
0.0
924
Normal
0.0
867
Tumor
0.0
111
Normal
0.0
884
Normal
0.0
484
Normal
0.0
534
Normal
0.0
911
Tumor
0.0
1046
Normal
0.0
383
Tumor
0.0
982
Normal
0.0
713
Tumor
0.0
128
Normal
0.0
477
Tumor
0.0
728
Normal
0.0
715
Tumor
0.0
186
Normal
0.0
958
Normal
0.0
755
Tumor
0.0
666
Normal
0.0
217
Tumor
0.0
298
Normal
0.0
465
Tumor
0.0
546
Normal
0.0
328
Normal
0.0
557
Tumor
0.0
356
Normal
0.0
361
Tumor
0.0
866
Normal
0.0
481
Tumor
0.0
472
Normal
0.0
142
Normal
0.0
695
Tumor
0.0
526
Normal
0.0
672
Normal
0.0
814
Normal
0.0
212
Normal
0.0
478
Normal
0.0
218
Normal
-0.1
956
Normal
-0.1
864
Normal
-0.1
661
Tumor
-0.1
123
Tumor
-0.1
185
Tumor
-0.1
558
Normal
-0.1
563
Tumor
-0.1
224
Normal
-0.1
1045
Tumor
-0.1
851
Tumor
-0.1
716
Normal
-0.1
698
Normal
-0.1
882
Normal
-0.1
641
Tumor
-0.1
482
Normal
-0.1
518
Normal
-0.1
514
Normal
-0.1
364
Normal
-0.1
148
Normal
-0.1
858
Normal
-0.1
136
Normal
-0.1
714
Normal
-0.1
464
Normal
-0.1
172
Normal
-0.1
862
Normal
-0.1
878
Normal
-0.1
636
Normal
-0.1
952
Normal
-0.1
474
Normal
-0.1
818
Normal
-0.1
423
Tumor
-0.1
554
Normal
-0.1
1028
Normal
-0.1
968
Normal
-0.1
723
Tumor
-0.1
738
Normal
-0.1
416
Normal
-0.1
513
Tumor
-0.1
138
Normal
-0.1
785
Tumor
-0.1
232
Normal
-0.1
524
Normal
-0.1
162
Normal
-0.1
874
Normal
-0.1
376
Normal
-0.1
421
Tumor
-0.1
494
Normal
-0.1
365
Tumor
-0.1
268
Normal
-0.1
272
Normal
-0.1
538
Normal
-0.1
525
Tumor
-0.1
448
Normal
-0.1
955
Tumor
-0.1
568
Normal
-0.1
1044
Normal
-0.1
488
Normal
-0.1
412
Normal
-0.1
778
Normal
-0.1
564
Normal
-0.1
617
Tumor
-0.1
462
Normal
-0.1
468
Normal
-0.1
456
Normal
-0.1
571
Tumor
-0.1
528
Normal
-0.1
616
Normal
-0.1
852
Normal
-0.1
981
Tumor
-0.1
861
Tumor
-0.1
756
Normal
-0.1
415
Tumor
-0.1
498
Normal
-0.1
146
Normal
-0.1
922
Normal
-0.1
627
Tumor
-0.1
1022
Normal
-0.1
863
Tumor
-0.1
222
Normal
-0.1
434
Normal
-0.1
126
Normal
-0.1
642
Normal
-0.1
312
Normal
-0.1
857
Tumor
-0.2
278
Normal
-0.2
114
Normal
-0.2
284
Normal
-0.2
824
Normal
-0.2
567
Tumor
-0.2
742
Normal
-0.2
191
Tumor
-0.2
384
Normal
-0.2
196
Normal
-0.2
132
Normal
-0.2
362
Normal
-0.2
466
Normal
-0.2
868
Normal
-0.2
816
Normal
-0.2
746
Normal
-0.2
124
Normal
-0.2
228
Normal
-0.2
452
Normal
-0.2
696
Normal
-0.2
286
Normal
-0.2
745
Tumor
-0.2
368
Normal
-0.2
366
Normal
-0.2
262
Normal
-0.2
744
Normal
-0.2
171
Tumor
-0.2
213
Tumor
-0.2
192
Normal
-0.2
918
Normal
-0.2
214
Normal
-0.2
451
Tumor
-0.3
628
Normal
-0.3
195
Tumor
-0.3
786
Normal
-0.3
141
Tumor
-0.3
258
Normal
-0.3
741
Tumor
-0.3
231
Tumor
-0.4
635
Tumor
-0.6
Show allShow less
LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
