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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
YWHAZ is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
145.5
Number of samples
362
Samples
Sample
Description
TPM
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
761.0
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
617.2
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
586.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
533.5
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
507.5
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
450.8
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
431.2
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
431.0
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
430.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
409.7
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
407.9
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
407.6
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
407.1
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
400.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
392.5
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
386.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
381.7
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
380.0
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
377.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
372.8
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
365.9
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
364.6
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
362.0
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
357.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
355.1
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
348.1
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
341.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
340.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
340.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
338.4
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
336.6
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
332.7
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
326.5
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
311.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
310.9
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
305.2
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
304.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
300.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
297.9
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
294.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
288.5
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
283.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
282.4
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
272.7
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
264.6
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
261.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
260.7
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
251.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
251.1
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
246.5
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
241.7
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
241.0
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
239.8
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
238.5
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
233.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
233.8
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
230.5
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
225.4
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
225.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
222.8
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
222.8
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
220.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
214.8
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
214.3
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
212.1
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
208.9
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
208.6
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
206.9
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
205.5
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
204.0
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
203.4
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
201.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
201.8
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
197.8
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
195.7
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
194.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
193.7
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
190.4
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
189.0
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
187.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
187.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
184.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
183.9
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
183.4
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
183.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
182.7
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
182.7
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
181.8
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
180.6
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
177.4
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
176.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
176.1
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
174.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
174.3
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
172.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
171.0
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
170.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
170.5
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
169.4
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
168.2
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
167.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
164.4
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
164.2
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
163.3
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
163.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
162.7
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
162.2
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
161.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
161.0
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
160.4
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
159.9
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
158.9
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
158.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
158.3
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
154.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
153.2
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
152.6
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
152.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
152.1
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
151.8
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
150.1
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
149.7
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
148.9
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
148.9
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
148.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
148.0
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
147.7
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
147.6
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
147.6
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
147.3
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
146.1
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
146.0
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
145.1
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
144.3
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
142.4
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
140.0
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
139.3
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
139.3
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
138.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
138.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
137.5
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
137.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
136.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
133.7
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
133.2
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
132.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
132.0
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
130.4
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
129.8
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
129.2
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
129.2
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
128.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
128.3
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
128.3
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
127.8
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
126.8
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
126.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
126.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
126.0
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
125.9
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
125.5
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
122.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
122.6
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
122.4
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
122.1
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
120.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
120.6
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
120.1
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
118.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
117.4
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
117.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
116.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
116.6
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
116.5
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
116.5
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
116.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
115.9
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
115.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
114.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
114.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
114.0
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
113.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
112.2
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
112.1
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
111.4
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
111.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
109.9
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
109.6
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
109.5
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
109.4
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
109.4
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
108.5
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
107.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
105.0
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
104.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
104.6
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
104.6
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
104.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
104.0
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
103.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
102.7
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
102.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
101.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
101.6
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
101.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
101.0
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
100.5
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
100.3
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
100.3
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
100.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
100.0
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
99.7
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
99.7
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
99.6
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
98.9
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
98.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
98.1
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
97.4
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
96.5
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
95.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
95.8
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
95.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
94.8
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
94.4
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
93.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
93.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
92.9
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
92.2
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
92.1
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
91.5
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
90.9
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
90.6
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
90.5
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
90.3
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
90.2
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
89.2
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
89.1
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
88.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
86.2
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
86.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
86.1
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
85.1
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
84.3
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
84.1
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
84.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
83.9
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
82.8
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
82.2
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
81.7
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
81.7
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
81.6
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
81.6
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
80.4
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
79.5
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
79.3
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
78.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
78.4
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
77.5
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
77.1
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
77.1
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
77.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
76.7
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
76.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
76.1
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
75.6
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
75.3
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
75.0
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
74.8
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
74.7
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
74.3
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
73.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
73.7
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
73.6
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
73.3
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
73.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
72.8
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
72.8
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
72.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
71.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
71.7
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
71.5
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
69.7
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
69.2
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
69.2
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
69.0
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
68.7
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
68.1
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
67.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
67.3
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
66.8
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
66.3
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
65.7
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
64.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
64.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
64.4
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
63.5
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
63.3
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
63.3
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
63.3
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
62.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
61.8
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
61.4
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
61.0
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
59.8
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
59.8
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
59.7
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
59.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
58.7
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
58.4
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
58.3
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
57.9
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
57.8
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
57.4
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
57.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
56.8
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
56.7
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
56.6
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
56.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
56.5
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
56.1
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
54.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
54.0
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
53.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
52.7
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
52.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
51.5
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
49.5
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
49.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
49.1
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
49.1
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
48.8
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
48.8
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
48.3
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
47.3
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
47.3
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
46.7
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
45.8
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
45.2
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
43.1
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
42.3
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
42.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
41.0
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
40.9
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
38.5
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
37.5
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
37.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
36.3
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
36.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
35.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
33.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
33.5
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
33.2
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
32.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
32.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
31.7
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
31.6
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
31.4
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
25.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
24.9
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
23.3
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
23.1
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
YWHAZ is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
177.7
Number of samples
231
Samples
Sample
Description
TPM
DO45245
0 years, female, NA, stage:2, dead, 240 days
821.4
DO45211
0 years, male, NA, stage:3, alive, 240 days
751.1
DO23519
0 years, male, NA, stage:3, alive, 630 days
695.8
DO45279
0 years, male, NA, stage:3, alive, 1290 days
677.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
621.0
DO45307
0 years, female, NA, stage:4, dead, 240 days
620.2
DO45267
0 years, male, NA, stage:3, dead, 570 days
566.7
DO45269
0 years, male, NA, stage:3, alive, 750 days
564.4
DO45165
0 years, male, NA, stage:2, alive, 690 days
545.7
DO45145
0 years, male, NA, stage:3, dead, 60 days
495.8
DO45093
0 years, male, NA, stage:2, dead, 720 days
451.9
DO45299
0 years, female, NA, stage:1, alive, 1440 days
434.8
DO50806
0 years, male, NA, stage:4, alive, 540 days
418.1
DO45205
0 years, female, NA, stage:2, dead, 90 days
415.4
DO50785
0 years, male, NA, stage:4, dead, 90 days
405.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
393.1
DO45161
0 years, male, NA, stage:2, dead, 540 days
373.6
DO50778
0 years, male, NA, stage:4, alive, 630 days
367.3
DO48720
0 years, female, NA, stage:2, alive, 570 days
350.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
345.4
DO23521
0 years, male, NA, stage:3, alive, 1110 days
340.2
DO45301
0 years, male, NA, stage:2, dead, 1440 days
337.5
DO45305
0 years, male, NA, stage:4, alive, 300 days
332.4
DO23523
0 years, male, NA, stage:3, alive, 1080 days
331.1
DO45303
0 years, female, NA, stage:3, alive, 990 days
315.9
DO45285
0 years, male, NA, stage:3, alive, 480 days
315.6
DO45263
0 years, male, NA, stage:3, dead, 270 days
313.7
DO48697
0 years, female, NA, stage:2, dead, 810 days
310.2
DO45289
0 years, female, NA, stage:3, alive, 360 days
303.9
DO45221
0 years, female, NA, stage:4, dead, 390 days
303.8
DO45273
0 years, male, NA, stage:2, alive, 480 days
295.5
DO45287
0 years, male, NA, stage:1, alive, 390 days
294.5
DO23510
0 years, female, NA, stage:2, alive, 870 days
282.1
DO48672
0 years, male, NA, stage:2, alive, 450 days
274.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
274.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
272.1
DO45119
0 years, male, NA, stage:3, dead, 510 days
271.5
DO50829
0 years, male, NA, stage:3, alive, 570 days
271.5
DO45185
0 years, male, NA, stage:2, alive, 600 days
269.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
269.5
DO45121
0 years, male, NA, stage:3, alive, 1530 days
266.7
DO48728
0 years, female, NA, stage:2, alive, 150 days
263.2
DO45157
0 years, male, NA, stage:2, alive, 1980 days
261.4
DO50811
0 years, male, NA, stage:1, alive, 450 days
256.4
DO45189
0 years, female, NA, stage:2, alive, 1200 days
254.1
DO45155
0 years, male, NA, stage:2, alive, 2160 days
252.3
DO50803
0 years, female, NA, stage:1, alive, 540 days
250.8
DO23530
0 years, male, NA, stage:4, dead, 180 days
250.1
DO45257
0 years, male, NA, stage:3, alive, 810 days
247.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
243.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
239.1
DO23547
0 years, male, NA, stage:1, alive, 1020 days
235.6
DO45213
0 years, male, NA, stage:1, alive, 1200 days
235.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
234.3
DO50799
0 years, female, NA, stage:2, alive, 540 days
231.6
DO45103
0 years, male, NA, stage:3, alive, 450 days
230.5
DO48717
0 years, male, NA, stage:4, dead, 180 days
228.9
DO45239
0 years, male, NA, stage:2, alive, 870 days
223.5
DO23526
0 years, male, NA, stage:3, alive, 1050 days
218.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
218.0
DO23535
0 years, male, NA, stage:1, alive, 960 days
217.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
216.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
214.9
DO45283
0 years, male, NA, stage:3, alive, 510 days
211.8
DO45095
0 years, male, NA, stage:2, alive, 1620 days
208.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
206.3
DO23525
0 years, male, NA, stage:4, alive, 1050 days
202.0
DO45225
0 years, male, NA, stage:1, alive, 1050 days
201.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
201.8
DO45139
0 years, male, NA, stage:3, alive, 1320 days
201.5
DO45223
0 years, male, NA, stage:4, alive, 1020 days
201.4
DO227801
0 years, female, NA, stage:1, alive, 660 days
200.8
DO45253
0 years, male, NA, stage:2, alive, 870 days
199.1
DO45143
0 years, male, NA, stage:3, alive, 1290 days
195.4
DO50798
0 years, male, NA, stage:3, dead, 30 days
193.7
DO48730
0 years, female, NA, stage:2, alive, 630 days
192.2
DO48732
0 years, male, NA, stage:3, alive, 630 days
188.6
DO23542
0 years, male, NA, stage:3, alive, 960 days
187.9
DO45247
0 years, female, NA, stage:2, alive, 210 days
185.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
184.6
DO45219
0 years, male, NA, stage:2, alive, 1080 days
184.0
DO48736
0 years, female, NA, stage:1, alive, 600 days
182.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
181.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
179.3
DO45135
0 years, male, NA, stage:1, alive, 1410 days
175.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
175.4
DO45203
0 years, female, NA, stage:2, alive, 1170 days
175.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
174.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
174.2
DO45187
0 years, female, NA, stage:1, alive, 1260 days
172.2
DO50791
0 years, female, NA, stage:1, dead, 480 days
171.9
DO45141
0 years, male, NA, stage:2, alive, 1320 days
170.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
169.7
DO50850
0 years, male, NA, stage:3, alive, 720 days
168.8
DO23514
0 years, male, NA, stage:2, alive, 1290 days
165.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
160.2
DO45115
0 years, male, NA, stage:2, alive, 840 days
159.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
157.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
157.1
DO50855
0 years, male, NA, stage:2, alive, 570 days
155.8
DO45191
0 years, female, NA, stage:2, alive, 1200 days
154.7
DO48743
0 years, female, NA, stage:2, alive, 570 days
151.4
DO45153
0 years, female, NA, stage:2, alive, 1380 days
151.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
150.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
149.2
DO48716
0 years, male, NA, stage:2, alive, 720 days
148.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
147.9
DO23549
0 years, male, NA, stage:3, alive, 990 days
147.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
147.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
146.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
146.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
145.4
DO50809
0 years, male, NA, stage:3, dead, 720 days
140.7
DO23516
0 years, male, NA, stage:3, dead, 20 days
140.6
DO48679
0 years, male, NA, stage:2, alive, 1200 days
139.0
DO45237
0 years, male, NA, stage:2, alive, 900 days
137.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
134.6
DO48733
0 years, male, NA, stage:2, alive, 600 days
134.2
DO50859
0 years, male, NA, stage:2, alive, 180 days
133.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
133.2
DO48706
0 years, male, NA, stage:2, alive, 870 days
130.2
DO48681
0 years, male, NA, stage:2, alive, 900 days
130.1
DO23518
0 years, male, NA, stage:2, alive, 1320 days
130.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
129.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
127.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
127.2
DO48737
0 years, male, NA, stage:1, alive, 720 days
125.9
DO23513
0 years, male, NA, stage:3, alive, 1200 days
125.8
DO50819
0 years, female, NA, stage:2, alive, 510 days
125.5
DO23509
0 years, male, NA, stage:3, dead, 780 days
125.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
125.1
DO50808
0 years, male, NA, stage:2, alive, 570 days
125.0
DO45099
0 years, male, NA, stage:3, alive, 1590 days
124.5
DO50774
0 years, female, NA, stage:2, alive, 720 days
124.5
DO45159
0 years, male, NA, stage:3, alive, 1470 days
124.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
123.8
DO45235
0 years, female, NA, stage:1, alive, 900 days
123.5
DO23515
0 years, male, NA, stage:2, alive, 1230 days
123.4
DO45233
0 years, male, NA, stage:3, alive, 900 days
122.6
DO23528
0 years, female, NA, stage:2, alive, 1020 days
122.6
DO23552
0 years, female, NA, stage:1, alive, 810 days
122.5
DO45265
0 years, male, NA, stage:3, alive, 1020 days
122.1
DO23537
0 years, male, NA, stage:2, dead, 900 days
119.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
118.3
DO48761
0 years, male, NA, stage:2, alive, 870 days
117.8
DO45171
0 years, male, NA, stage:3, alive, 600 days
117.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
117.5
DO45177
0 years, female, NA, stage:3, alive, 1260 days
116.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
115.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
115.6
DO50815
0 years, male, NA, stage:3, alive, 150 days
113.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
113.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
111.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
109.9
DO48695
0 years, male, NA, stage:2, alive, 720 days
109.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
109.6
DO48701
0 years, male, NA, stage:2, alive, 780 days
108.6
DO45229
0 years, male, NA, stage:1, alive, 990 days
108.5
DO45097
0 years, male, NA, stage:3, alive, 1620 days
104.4
DO50820
0 years, female, NA, stage:3, alive, 510 days
104.0
DO45197
0 years, male, NA, stage:2, alive, 1170 days
102.4
DO48741
0 years, male, NA, stage:3, alive, 240 days
100.0
DO45207
0 years, male, NA, stage:1, alive, 1050 days
99.6
DO48746
0 years, male, NA, stage:3, alive, 570 days
96.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
93.6
DO48759
0 years, male, NA, stage:3, alive, 720 days
91.5
DO50816
0 years, male, NA, stage:2, alive, 390 days
91.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
89.8
DO50776
0 years, male, NA, stage:1, alive, 690 days
89.3
DO45181
0 years, female, NA, stage:2, alive, 1200 days
89.3
DO23508
0 years, female, NA, stage:2, alive, 390 days
89.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
88.8
DO45281
0 years, male, NA, stage:4, alive, 750 days
88.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
88.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
88.5
DO48727
0 years, female, NA, stage:2, dead, 390 days
87.9
DO48715
0 years, female, NA, stage:2, dead, 690 days
83.3
DO45209
0 years, male, NA, stage:4, alive, 1350 days
82.5
DO48719
0 years, male, NA, stage:2, alive, 690 days
82.4
DO45117
0 years, female, NA, stage:2, dead, 1110 days
81.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
79.2
DO23550
0 years, male, NA, stage:1, alive, 990 days
79.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
78.5
DO23548
0 years, female, NA, stage:1, alive, 840 days
78.4
DO50804
0 years, male, NA, stage:2, alive, 720 days
76.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
74.0
DO23536
0 years, male, NA, stage:2, alive, 930 days
73.0
DO45101
0 years, male, NA, stage:2, alive, 1680 days
72.9
DO50813
0 years, male, NA, stage:2, alive, 420 days
72.7
DO23511
0 years, female, NA, stage:3, dead, 180 days
72.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
72.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
71.3
DO50787
0 years, male, NA, stage:3, alive, 480 days
70.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
70.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
70.0
DO50825
0 years, male, NA, stage:2, alive, 390 days
69.3
DO45133
0 years, male, NA, stage:3, dead, 660 days
68.8
DO23538
0 years, male, NA, stage:2, alive, 450 days
67.4
DO48721
0 years, female, NA, stage:1, alive, 900 days
67.0
DO50817
0 years, male, NA, stage:2, alive, 390 days
64.9
DO23527
0 years, male, NA, stage:1, alive, 1050 days
64.6
DO23531
0 years, female, NA, stage:3, alive, 900 days
64.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
64.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
62.4
DO48742
0 years, male, NA, stage:2, alive, 600 days
61.0
DO45179
0 years, female, NA, stage:2, alive, 600 days
59.6
DO45149
0 years, female, NA, stage:2, alive, 1260 days
58.8
DO48760
0 years, female, NA, stage:2, alive, 690 days
58.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
58.0
DO50818
0 years, male, NA, stage:2, alive, 510 days
58.0
DO227643
0 years, male, NA, stage:2, alive, 1260 days
56.7
DO45175
0 years, male, NA, stage:2, alive, 1140 days
56.1
DO23539
0 years, male, NA, stage:1, alive, 1110 days
56.1
DO45111
0 years, male, NA, stage:2, alive, 1590 days
55.0
DO23517
0 years, male, NA, stage:2, alive, 1200 days
52.9
DO23544
0 years, male, NA, stage:2, alive, 960 days
52.3
DO48677
0 years, male, NA, stage:3, alive, 1140 days
51.4
DO45167
0 years, male, NA, stage:2, dead, 1440 days
51.0
DO45227
0 years, female, NA, stage:2, alive, 1020 days
50.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
50.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
50.1
DO45125
0 years, male, NA, stage:3, alive, 1680 days
49.7
DO45129
0 years, male, NA, stage:3, alive, 1470 days
46.9
DO45195
0 years, male, NA, stage:1, alive, 390 days
46.4
DO45105
0 years, male, NA, stage:1, alive, 1680 days
44.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
37.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
33.8
DO23532
0 years, female, NA, stage:1, alive, 960 days
33.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
29.4
DO23534
0 years, male, NA, stage:2, alive, 840 days
28.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
27.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
685
Tumor
0.8
557
Tumor
0.8
917
Tumor
0.8
285
Tumor
0.7
951
Tumor
0.7
395
Tumor
0.7
283
Tumor
0.6
385
Tumor
0.6
817
Tumor
0.5
135
Tumor
0.5
641
Tumor
0.5
471
Tumor
0.5
881
Tumor
0.5
983
Tumor
0.4
925
Tumor
0.4
617
Tumor
0.4
877
Tumor
0.4
823
Tumor
0.4
427
Tumor
0.4
545
Tumor
0.4
975
Tumor
0.4
493
Tumor
0.4
743
Tumor
0.3
537
Tumor
0.3
467
Tumor
0.3
351
Tumor
0.3
375
Tumor
0.3
535
Tumor
0.3
715
Tumor
0.3
131
Tumor
0.3
873
Tumor
0.3
478
Normal
0.3
663
Tumor
0.3
185
Tumor
0.3
211
Tumor
0.3
231
Tumor
0.3
525
Tumor
0.3
671
Tumor
0.3
1025
Tumor
0.3
331
Tumor
0.2
724
Normal
0.2
223
Tumor
0.2
343
Tumor
0.2
297
Tumor
0.2
963
Tumor
0.2
311
Tumor
0.2
1013
Tumor
0.2
1015
Tumor
0.2
813
Tumor
0.2
497
Tumor
0.2
713
Tumor
0.2
567
Tumor
0.2
745
Tumor
0.2
527
Tumor
0.2
192
Normal
0.2
421
Tumor
0.2
536
Normal
0.2
367
Tumor
0.2
916
Normal
0.2
814
Normal
0.2
921
Tumor
0.2
1031
Tumor
0.1
1021
Tumor
0.1
444
Normal
0.1
851
Tumor
0.1
447
Tumor
0.1
413
Tumor
0.1
883
Tumor
0.1
978
Normal
0.1
563
Tumor
0.1
857
Tumor
0.1
865
Tumor
0.1
492
Normal
0.1
697
Tumor
0.1
191
Tumor
0.1
195
Tumor
0.1
965
Tumor
0.1
147
Tumor
0.1
221
Tumor
0.1
524
Normal
0.1
498
Normal
0.1
187
Tumor
0.1
538
Normal
0.1
257
Tumor
0.1
483
Tumor
0.1
271
Tumor
0.1
516
Normal
0.1
445
Tumor
0.1
277
Tumor
0.1
461
Tumor
0.0
224
Normal
0.0
188
Normal
0.0
943
Tumor
0.0
112
Tumor
0.0
213
Tumor
0.0
363
Tumor
0.0
455
Tumor
0.0
463
Tumor
0.0
874
Normal
0.0
852
Normal
0.0
415
Tumor
0.0
1043
Tumor
0.0
721
Tumor
0.0
126
Normal
0.0
984
Normal
0.0
212
Normal
0.0
473
Tumor
0.0
868
Normal
0.0
528
Normal
0.0
966
Normal
0.0
284
Normal
0.0
957
Tumor
0.0
533
Tumor
0.0
268
Normal
0.0
937
Tumor
0.0
982
Normal
0.0
355
Tumor
0.0
416
Normal
0.0
386
Normal
0.0
778
Normal
0.0
976
Normal
0.0
1041
Tumor
-0.1
443
Tumor
-0.1
911
Tumor
-0.1
816
Normal
-0.1
1044
Normal
-0.1
491
Tumor
-0.1
737
Tumor
-0.1
387
Tumor
-0.1
434
Normal
-0.1
573
Tumor
-0.1
1027
Tumor
-0.1
161
Tumor
-0.1
786
Normal
-0.1
866
Normal
-0.1
815
Tumor
-0.1
884
Normal
-0.1
425
Tumor
-0.1
727
Tumor
-0.1
958
Normal
-0.1
267
Tumor
-0.1
1042
Normal
-0.1
914
Normal
-0.1
411
Tumor
-0.1
327
Tumor
-0.1
523
Tumor
-0.1
514
Normal
-0.1
777
Tumor
-0.1
227
Tumor
-0.1
861
Tumor
-0.1
968
Normal
-0.1
137
Tumor
-0.1
716
Normal
-0.1
435
Tumor
-0.1
952
Normal
-0.1
967
Tumor
-0.1
728
Normal
-0.1
878
Normal
-0.1
882
Normal
-0.1
472
Normal
-0.1
553
Tumor
-0.1
515
Tumor
-0.1
217
Tumor
-0.1
926
Normal
-0.1
1028
Normal
-0.1
517
Tumor
-0.1
362
Normal
-0.1
146
Normal
-0.1
384
Normal
-0.1
864
Normal
-0.1
364
Normal
-0.1
1014
Normal
-0.1
738
Normal
-0.1
474
Normal
-0.1
913
Tumor
-0.1
665
Tumor
-0.1
423
Tumor
-0.1
924
Normal
-0.1
383
Tumor
-0.1
954
Normal
-0.1
912
Normal
-0.1
145
Tumor
-0.1
953
Tumor
-0.1
956
Normal
-0.1
228
Normal
-0.2
328
Normal
-0.2
125
Tumor
-0.2
113
Tumor
-0.2
1032
Normal
-0.2
433
Tumor
-0.2
171
Tumor
-0.2
448
Normal
-0.2
1016
Normal
-0.2
686
Normal
-0.2
462
Normal
-0.2
513
Tumor
-0.2
818
Normal
-0.2
424
Normal
-0.2
412
Normal
-0.2
661
Tumor
-0.2
862
Normal
-0.2
824
Normal
-0.2
1022
Normal
-0.2
918
Normal
-0.2
744
Normal
-0.2
341
Tumor
-0.2
286
Normal
-0.2
756
Normal
-0.2
558
Normal
-0.2
1045
Tumor
-0.2
714
Normal
-0.2
858
Normal
-0.2
672
Normal
-0.2
262
Normal
-0.2
313
Tumor
-0.2
574
Normal
-0.2
742
Normal
-0.2
136
Normal
-0.2
696
Normal
-0.2
964
Normal
-0.2
172
Normal
-0.2
723
Tumor
-0.2
746
Normal
-0.2
366
Normal
-0.2
482
Normal
-0.2
312
Normal
-0.2
1026
Normal
-0.2
138
Normal
-0.2
546
Normal
-0.2
867
Tumor
-0.2
494
Normal
-0.2
361
Tumor
-0.2
214
Normal
-0.2
352
Normal
-0.2
922
Normal
-0.2
518
Normal
-0.2
162
Normal
-0.2
698
Normal
-0.2
365
Tumor
-0.2
722
Normal
-0.2
218
Normal
-0.2
142
Normal
-0.2
414
Normal
-0.2
394
Normal
-0.2
422
Normal
-0.2
344
Normal
-0.2
662
Normal
-0.2
944
Normal
-0.2
127
Tumor
-0.2
863
Tumor
-0.2
332
Normal
-0.3
357
Tumor
-0.3
456
Normal
-0.3
488
Normal
-0.3
484
Normal
-0.3
628
Normal
-0.3
396
Normal
-0.3
278
Normal
-0.3
272
Normal
-0.3
664
Normal
-0.3
354
Normal
-0.3
148
Normal
-0.3
938
Normal
-0.3
955
Tumor
-0.3
124
Normal
-0.3
534
Normal
-0.3
368
Normal
-0.3
428
Normal
-0.3
141
Tumor
-0.3
526
Normal
-0.3
915
Tumor
-0.3
451
Tumor
-0.3
356
Normal
-0.3
391
Tumor
-0.3
431
Tumor
-0.3
755
Tumor
-0.3
392
Normal
-0.3
432
Normal
-0.3
353
Tumor
-0.3
111
Normal
-0.3
616
Normal
-0.3
186
Normal
-0.3
426
Normal
-0.3
666
Normal
-0.3
977
Tumor
-0.3
1046
Normal
-0.3
468
Normal
-0.3
446
Normal
-0.3
572
Normal
-0.3
564
Normal
-0.3
358
Normal
-0.3
554
Normal
-0.3
466
Normal
-0.3
785
Tumor
-0.3
923
Tumor
-0.3
388
Normal
-0.3
123
Tumor
-0.3
981
Tumor
-0.3
196
Normal
-0.3
464
Normal
-0.4
436
Normal
-0.4
618
Normal
-0.4
114
Normal
-0.4
571
Tumor
-0.4
642
Normal
-0.4
376
Normal
-0.4
568
Normal
-0.4
487
Tumor
-0.4
452
Normal
-0.4
342
Normal
-0.4
314
Normal
-0.4
258
Normal
-0.4
481
Tumor
-0.4
128
Normal
-0.4
298
Normal
-0.4
635
Tumor
-0.4
393
Tumor
-0.4
222
Normal
-0.4
648
Normal
-0.4
132
Normal
-0.4
627
Tumor
-0.5
232
Normal
-0.5
695
Tumor
-0.5
465
Tumor
-0.5
636
Normal
-0.5
615
Tumor
-0.5
261
Tumor
-0.5
741
Tumor
-0.6
477
Tumor
-0.6
647
Tumor
-0.7
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.