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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMUB1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
62.4
Number of samples
362
Samples
Sample
Description
TPM
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
202.9
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
153.1
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
146.7
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
143.8
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
143.4
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
138.2
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
130.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
130.1
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
129.5
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
129.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
127.7
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
125.9
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
125.6
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
125.1
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
122.6
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
122.0
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
121.3
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
118.1
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
116.7
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
114.7
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
113.6
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
113.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
112.3
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
109.7
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
109.5
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
107.4
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
107.1
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
106.4
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
105.8
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
105.1
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
104.7
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
104.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
103.9
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
103.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
102.9
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
102.0
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
101.6
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
100.8
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
100.6
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
100.3
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
99.7
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
99.2
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
99.0
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
98.8
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
98.8
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
98.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
97.3
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
96.4
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
96.2
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
95.6
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
94.1
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
93.8
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
93.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
92.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
92.5
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
92.0
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
90.5
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
89.0
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
88.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
87.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
87.6
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
87.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
86.9
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
86.8
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
86.2
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
85.8
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
85.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
85.2
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
83.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
82.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
80.9
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
80.8
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
80.7
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
80.6
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
80.3
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
80.2
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
79.1
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
78.8
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
78.4
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
78.1
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
78.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
76.9
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
76.5
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
76.5
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
76.4
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
76.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
75.7
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
75.4
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
74.4
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
74.4
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
74.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
73.9
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
73.7
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
73.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
73.5
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
73.4
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
73.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
72.9
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
72.7
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
72.3
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
72.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
72.2
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
72.0
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
71.7
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
71.5
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
71.1
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
71.1
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
71.0
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
70.8
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
70.8
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
70.7
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
70.6
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
70.6
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
70.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
70.1
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
69.9
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
69.7
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
69.6
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
69.1
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
69.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
68.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
68.7
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
68.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
68.4
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
68.2
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
67.8
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
67.7
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
67.7
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
67.1
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
66.9
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
66.2
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
66.2
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
66.1
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
66.0
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
65.9
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
65.8
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
65.1
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
65.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
64.9
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
64.8
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
64.8
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
64.7
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
64.5
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
64.3
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
64.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
64.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
63.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
63.6
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
63.5
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
63.3
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
63.1
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
62.9
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
62.7
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
62.4
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
62.2
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
62.1
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
61.6
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
61.3
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
61.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
61.1
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
60.6
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
60.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
60.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
59.7
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
59.7
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
59.6
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
59.4
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
59.1
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
58.9
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
58.9
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
58.9
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
58.8
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
58.8
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
57.7
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
57.6
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
57.4
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
57.2
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
57.2
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
57.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
57.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
57.0
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
57.0
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
56.9
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
56.9
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
56.6
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
56.5
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
56.5
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
56.2
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
56.2
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
56.1
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
56.1
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
56.0
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
56.0
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
55.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
55.6
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
55.3
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
55.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
54.8
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
54.5
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
54.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
54.2
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
54.0
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
53.7
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
53.7
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
53.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
53.5
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
53.5
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
53.4
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
53.2
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
52.9
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
52.9
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
52.8
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
52.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
52.1
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
51.9
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
51.8
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
51.7
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
51.6
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
51.6
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
51.5
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
51.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
51.1
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
51.0
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
51.0
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
50.8
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
50.8
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
50.7
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
50.4
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
50.1
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
49.9
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
49.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
49.6
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
49.4
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
49.4
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
49.1
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
48.9
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
48.9
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
48.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
48.8
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
48.8
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
48.3
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
48.2
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
48.2
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
48.1
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
48.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
47.5
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
47.5
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
47.5
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
47.4
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
47.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
47.4
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
47.1
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
47.1
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
47.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
46.9
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
46.8
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
46.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
46.5
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
46.1
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
46.0
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
45.7
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
45.1
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
44.4
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
44.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
43.9
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
43.8
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
42.9
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
42.9
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
42.9
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
42.7
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
42.6
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
42.4
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
42.2
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
42.2
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
42.2
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
42.1
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
42.0
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
41.9
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
41.6
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
41.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
40.9
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
40.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
40.5
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
40.4
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
40.3
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
40.1
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
40.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
39.8
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
39.7
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
39.7
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
39.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
39.3
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
39.1
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
39.1
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
38.9
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
38.9
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
38.4
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
38.2
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
38.1
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
38.1
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
38.1
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
37.8
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
37.5
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
37.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
37.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
37.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
37.1
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
37.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
36.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
36.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
36.7
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
36.5
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
36.4
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
35.5
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
35.3
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
34.8
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
34.6
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
34.5
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
34.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
33.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
33.6
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
33.6
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
33.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
33.5
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
33.4
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
33.0
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
32.8
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
32.6
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
32.4
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
31.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
31.5
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
31.2
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
31.0
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
30.9
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
30.6
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
30.2
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
29.8
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
29.5
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
29.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
28.8
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
28.4
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
28.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
27.8
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
27.4
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
26.6
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
25.7
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
25.6
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
25.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
24.4
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
24.0
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
23.4
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
23.2
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
22.3
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
21.7
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
19.6
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
19.2
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
18.4
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
18.4
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
16.3
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
14.0
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
13.9
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
TMUB1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
37.8
Number of samples
231
Samples
Sample
Description
TPM
DO45209
0 years, male, NA, stage:4, alive, 1350 days
202.2
DO23532
0 years, female, NA, stage:1, alive, 960 days
148.3
DO45125
0 years, male, NA, stage:3, alive, 1680 days
126.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
119.8
DO45131
0 years, male, NA, stage:4, dead, 360 days
112.6
DO45217
0 years, female, NA, stage:3, dead, 270 days
112.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
111.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
92.5
DO23540
0 years, male, NA, stage:1, alive, 750 days
91.4
DO23526
0 years, male, NA, stage:3, alive, 1050 days
87.9
DO50816
0 years, male, NA, stage:2, alive, 390 days
87.8
DO50798
0 years, male, NA, stage:3, dead, 30 days
87.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
78.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
77.6
DO48747
0 years, male, NA, stage:3, alive, 540 days
74.1
DO50814
0 years, male, NA, stage:3, alive, 420 days
72.9
DO48701
0 years, male, NA, stage:2, alive, 780 days
72.0
DO23525
0 years, male, NA, stage:4, alive, 1050 days
70.8
DO23513
0 years, male, NA, stage:3, alive, 1200 days
70.5
DO23516
0 years, male, NA, stage:3, dead, 20 days
69.3
DO48730
0 years, female, NA, stage:2, alive, 630 days
65.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
64.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
64.0
DO45299
0 years, female, NA, stage:1, alive, 1440 days
63.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
61.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
61.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
61.2
DO48693
0 years, male, NA, stage:2, alive, 900 days
61.0
DO45193
0 years, female, NA, stage:4, dead, 120 days
57.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
57.5
DO45289
0 years, female, NA, stage:3, alive, 360 days
56.0
DO23512
0 years, male, NA, stage:1, alive, 1260 days
55.7
DO45185
0 years, male, NA, stage:2, alive, 600 days
55.0
DO45201
0 years, male, NA, stage:1, alive, 900 days
53.6
DO50783
0 years, male, NA, stage:3, alive, 480 days
52.7
DO23508
0 years, female, NA, stage:2, alive, 390 days
52.5
DO45301
0 years, male, NA, stage:2, dead, 1440 days
52.1
DO45307
0 years, female, NA, stage:4, dead, 240 days
52.0
DO50855
0 years, male, NA, stage:2, alive, 570 days
51.7
DO45241
0 years, male, NA, stage:1, alive, 1080 days
51.7
DO50809
0 years, male, NA, stage:3, dead, 720 days
50.9
DO48697
0 years, female, NA, stage:2, dead, 810 days
49.0
DO50799
0 years, female, NA, stage:2, alive, 540 days
48.5
DO50844
0 years, male, NA, stage:4, alive, 300 days
48.4
DO45277
0 years, male, NA, stage:3, alive, 600 days
47.4
DO23537
0 years, male, NA, stage:2, dead, 900 days
47.1
DO45285
0 years, male, NA, stage:3, alive, 480 days
46.3
DO45161
0 years, male, NA, stage:2, dead, 540 days
45.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
45.7
DO48715
0 years, female, NA, stage:2, dead, 690 days
45.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
45.0
DO23548
0 years, female, NA, stage:1, alive, 840 days
45.0
DO45297
0 years, female, NA, stage:4, dead, 1260 days
44.8
DO45117
0 years, female, NA, stage:2, dead, 1110 days
44.8
DO45305
0 years, male, NA, stage:4, alive, 300 days
44.5
DO23546
0 years, male, NA, stage:2, alive, 1050 days
44.5
DO45173
0 years, male, NA, stage:3, alive, 1170 days
44.3
DO45275
0 years, male, NA, stage:3, dead, 10 days
44.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
43.8
DO50829
0 years, male, NA, stage:3, alive, 570 days
43.7
DO45092
0 years, male, NA, stage:4, dead, 1200 days
43.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
43.1
DO45149
0 years, female, NA, stage:2, alive, 1260 days
42.8
DO50832
0 years, male, NA, stage:3, alive, 90 days
42.6
DO45259
0 years, male, NA, stage:3, alive, 330 days
41.9
DO48759
0 years, male, NA, stage:3, alive, 720 days
41.7
DO48677
0 years, male, NA, stage:3, alive, 1140 days
41.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
41.2
DO45269
0 years, male, NA, stage:3, alive, 750 days
41.2
DO45205
0 years, female, NA, stage:2, dead, 90 days
40.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
40.5
DO50802
0 years, male, NA, stage:2, alive, 930 days
40.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
40.2
DO48717
0 years, male, NA, stage:4, dead, 180 days
39.9
DO45095
0 years, male, NA, stage:2, alive, 1620 days
38.9
DO50778
0 years, male, NA, stage:4, alive, 630 days
38.6
DO50804
0 years, male, NA, stage:2, alive, 720 days
38.6
DO50811
0 years, male, NA, stage:1, alive, 450 days
38.4
DO23545
0 years, male, NA, stage:2, dead, 570 days
38.2
DO45243
0 years, female, NA, stage:3, alive, 930 days
37.9
DO45171
0 years, male, NA, stage:3, alive, 600 days
37.8
DO23539
0 years, male, NA, stage:1, alive, 1110 days
37.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
37.5
DO45091
0 years, male, NA, stage:2, dead, 1320 days
37.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
37.4
DO45141
0 years, male, NA, stage:2, alive, 1320 days
37.2
DO45159
0 years, male, NA, stage:3, alive, 1470 days
37.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
36.7
DO45221
0 years, female, NA, stage:4, dead, 390 days
36.7
DO23543
0 years, male, NA, stage:2, alive, 1020 days
36.4
DO48716
0 years, male, NA, stage:2, alive, 720 days
36.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
35.7
DO45287
0 years, male, NA, stage:1, alive, 390 days
35.2
DO45096
0 years, male, NA, stage:2, dead, 1290 days
34.9
DO48737
0 years, male, NA, stage:1, alive, 720 days
34.7
DO23510
0 years, female, NA, stage:2, alive, 870 days
34.5
DO45215
0 years, male, NA, stage:2, alive, 1170 days
34.4
DO50805
0 years, male, NA, stage:2, alive, 690 days
34.2
DO45281
0 years, male, NA, stage:4, alive, 750 days
34.0
DO23521
0 years, male, NA, stage:3, alive, 1110 days
33.8
DO48706
0 years, male, NA, stage:2, alive, 870 days
33.7
DO45105
0 years, male, NA, stage:1, alive, 1680 days
33.5
DO48723
0 years, male, NA, stage:1, alive, 600 days
33.2
DO45109
0 years, male, NA, stage:2, alive, 1590 days
33.1
DO45169
0 years, male, NA, stage:3, alive, 1350 days
33.1
DO45263
0 years, male, NA, stage:3, dead, 270 days
33.0
DO45155
0 years, male, NA, stage:2, alive, 2160 days
32.9
DO45133
0 years, male, NA, stage:3, dead, 660 days
32.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
32.8
DO23535
0 years, male, NA, stage:1, alive, 960 days
32.5
DO48679
0 years, male, NA, stage:2, alive, 1200 days
32.4
DO45257
0 years, male, NA, stage:3, alive, 810 days
32.3
DO23517
0 years, male, NA, stage:2, alive, 1200 days
32.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
32.1
DO45255
0 years, male, NA, stage:3, alive, 720 days
32.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
32.0
DO48757
0 years, female, NA, stage:3, alive, 480 days
32.0
DO45143
0 years, male, NA, stage:3, alive, 1290 days
31.9
DO45153
0 years, female, NA, stage:2, alive, 1380 days
31.9
DO45207
0 years, male, NA, stage:1, alive, 1050 days
31.8
DO23528
0 years, female, NA, stage:2, alive, 1020 days
31.8
DO48746
0 years, male, NA, stage:3, alive, 570 days
31.7
DO50819
0 years, female, NA, stage:2, alive, 510 days
31.3
DO48719
0 years, male, NA, stage:2, alive, 690 days
31.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
30.7
DO45213
0 years, male, NA, stage:1, alive, 1200 days
30.6
DO48712
0 years, male, NA, stage:2, alive, 810 days
30.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
30.2
DO45199
0 years, female, NA, stage:2, alive, 1350 days
30.1
DO45189
0 years, female, NA, stage:2, alive, 1200 days
30.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
30.0
DO48674
0 years, male, NA, stage:2, alive, 1260 days
29.9
DO23533
0 years, male, NA, stage:2, alive, 900 days
29.6
DO45139
0 years, male, NA, stage:3, alive, 1320 days
29.6
DO45157
0 years, male, NA, stage:2, alive, 1980 days
29.5
DO48720
0 years, female, NA, stage:2, alive, 570 days
29.2
DO50813
0 years, male, NA, stage:2, alive, 420 days
29.2
DO50776
0 years, male, NA, stage:1, alive, 690 days
29.2
DO45231
0 years, male, NA, stage:2, alive, 930 days
28.9
DO50820
0 years, female, NA, stage:3, alive, 510 days
28.7
DO45123
0 years, female, NA, stage:2, dead, 570 days
28.6
DO45183
0 years, female, NA, stage:2, dead, 570 days
28.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
28.4
DO48681
0 years, male, NA, stage:2, alive, 900 days
28.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
28.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
28.1
DO45177
0 years, female, NA, stage:3, alive, 1260 days
27.9
DO45165
0 years, male, NA, stage:2, alive, 690 days
27.4
DO23524
0 years, female, NA, stage:2, alive, 1050 days
27.3
DO45111
0 years, male, NA, stage:2, alive, 1590 days
27.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
27.1
DO45099
0 years, male, NA, stage:3, alive, 1590 days
26.8
DO48682
0 years, female, NA, stage:3, dead, 120 days
26.8
DO45175
0 years, male, NA, stage:2, alive, 1140 days
26.8
DO45249
0 years, male, NA, stage:1, alive, 630 days
26.7
DO48751
0 years, male, NA, stage:2, dead, 480 days
26.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
26.2
DO45245
0 years, female, NA, stage:2, dead, 240 days
26.0
DO45303
0 years, female, NA, stage:3, alive, 990 days
25.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
25.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
25.5
DO45137
0 years, male, NA, stage:1, alive, 1320 days
25.4
DO48727
0 years, female, NA, stage:2, dead, 390 days
25.4
DO48672
0 years, male, NA, stage:2, alive, 450 days
25.3
DO48728
0 years, female, NA, stage:2, alive, 150 days
25.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
25.1
DO45229
0 years, male, NA, stage:1, alive, 990 days
25.0
DO45251
0 years, female, NA, stage:2, alive, 900 days
24.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
24.7
DO48732
0 years, male, NA, stage:3, alive, 630 days
24.7
DO45119
0 years, male, NA, stage:3, dead, 510 days
24.0
DO45283
0 years, male, NA, stage:3, alive, 510 days
23.6
DO23527
0 years, male, NA, stage:1, alive, 1050 days
23.3
DO45235
0 years, female, NA, stage:1, alive, 900 days
23.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
22.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
22.9
DO48721
0 years, female, NA, stage:1, alive, 900 days
22.7
DO23509
0 years, male, NA, stage:3, dead, 780 days
22.5
DO45219
0 years, male, NA, stage:2, alive, 1080 days
22.5
DO45103
0 years, male, NA, stage:3, alive, 450 days
21.8
DO48733
0 years, male, NA, stage:2, alive, 600 days
21.8
DO23536
0 years, male, NA, stage:2, alive, 930 days
21.6
DO48736
0 years, female, NA, stage:1, alive, 600 days
21.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
21.4
DO45191
0 years, female, NA, stage:2, alive, 1200 days
21.3
DO23518
0 years, male, NA, stage:2, alive, 1320 days
21.0
DO45203
0 years, female, NA, stage:2, alive, 1170 days
20.9
DO45279
0 years, male, NA, stage:3, alive, 1290 days
20.6
DO50845
0 years, male, NA, stage:3, alive, 210 days
20.6
DO45225
0 years, male, NA, stage:1, alive, 1050 days
20.4
DO23538
0 years, male, NA, stage:2, alive, 450 days
20.2
DO50840
0 years, male, NA, stage:2, alive, 330 days
20.2
DO45094
0 years, male, NA, stage:3, alive, 1650 days
20.1
DO45237
0 years, male, NA, stage:2, alive, 900 days
19.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
19.7
DO45223
0 years, male, NA, stage:4, alive, 1020 days
19.6
DO50787
0 years, male, NA, stage:3, alive, 480 days
19.5
DO227643
0 years, male, NA, stage:2, alive, 1260 days
19.5
DO45127
0 years, male, NA, stage:3, dead, 420 days
19.2
DO45135
0 years, male, NA, stage:1, alive, 1410 days
19.1
DO45197
0 years, male, NA, stage:2, alive, 1170 days
19.0
DO45181
0 years, female, NA, stage:2, alive, 1200 days
18.9
DO50859
0 years, male, NA, stage:2, alive, 180 days
18.5
DO48761
0 years, male, NA, stage:2, alive, 870 days
18.3
DO48695
0 years, male, NA, stage:2, alive, 720 days
18.0
DO48742
0 years, male, NA, stage:2, alive, 600 days
17.9
DO45121
0 years, male, NA, stage:3, alive, 1530 days
17.8
DO227801
0 years, female, NA, stage:1, alive, 660 days
17.6
DO48760
0 years, female, NA, stage:2, alive, 690 days
17.5
DO23541
0 years, male, NA, stage:2, alive, 930 days
17.0
DO50803
0 years, female, NA, stage:1, alive, 540 days
16.9
DO23550
0 years, male, NA, stage:1, alive, 990 days
16.8
DO50774
0 years, female, NA, stage:2, alive, 720 days
16.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
16.4
DO50807
0 years, male, NA, stage:1, alive, 540 days
16.4
DO50822
0 years, male, NA, stage:2, alive, 510 days
16.3
DO50800
0 years, male, NA, stage:2, alive, 510 days
16.1
DO48704
0 years, female, NA, stage:3, alive, 750 days
15.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
15.2
DO23544
0 years, male, NA, stage:2, alive, 960 days
15.1
DO23530
0 years, male, NA, stage:4, dead, 180 days
15.0
DO23531
0 years, female, NA, stage:3, alive, 900 days
14.6
DO50857
0 years, male, NA, stage:2, alive, 210 days
14.3
DO45247
0 years, female, NA, stage:2, alive, 210 days
14.3
DO45211
0 years, male, NA, stage:3, alive, 240 days
14.2
DO45233
0 years, male, NA, stage:3, alive, 900 days
14.1
DO45187
0 years, female, NA, stage:1, alive, 1260 days
12.7
DO45227
0 years, female, NA, stage:2, alive, 1020 days
12.2
DO45195
0 years, male, NA, stage:1, alive, 390 days
11.5
DO23551
0 years, male, NA, stage:3, dead, 150 days
11.2
DO45163
0 years, male, NA, stage:2, alive, 960 days
7.5
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
616
Normal
1.4
481
Tumor
1.3
1013
Tumor
1.2
635
Tumor
1.2
911
Tumor
1.2
615
Tumor
1.1
387
Tumor
0.9
636
Normal
0.9
572
Normal
0.9
785
Tumor
0.9
862
Normal
0.8
445
Tumor
0.8
171
Tumor
0.8
685
Tumor
0.8
1014
Normal
0.8
686
Normal
0.8
912
Normal
0.8
721
Tumor
0.8
857
Tumor
0.7
231
Tumor
0.7
257
Tumor
0.7
1022
Normal
0.7
435
Tumor
0.6
915
Tumor
0.6
1032
Normal
0.6
741
Tumor
0.6
977
Tumor
0.6
558
Normal
0.6
716
Normal
0.6
742
Normal
0.6
628
Normal
0.6
1027
Tumor
0.6
727
Tumor
0.6
714
Normal
0.6
1043
Tumor
0.6
745
Tumor
0.6
342
Normal
0.5
568
Normal
0.5
937
Tumor
0.5
723
Tumor
0.5
755
Tumor
0.5
351
Tumor
0.5
571
Tumor
0.5
618
Normal
0.5
877
Tumor
0.5
341
Tumor
0.5
978
Normal
0.5
313
Tumor
0.5
938
Normal
0.5
983
Tumor
0.5
851
Tumor
0.5
738
Normal
0.5
482
Normal
0.5
498
Normal
0.4
852
Normal
0.4
951
Tumor
0.4
924
Normal
0.4
1044
Normal
0.4
361
Tumor
0.4
884
Normal
0.4
261
Tumor
0.4
478
Normal
0.4
648
Normal
0.4
868
Normal
0.4
824
Normal
0.4
921
Tumor
0.4
426
Normal
0.4
818
Normal
0.4
968
Normal
0.4
954
Normal
0.4
494
Normal
0.4
816
Normal
0.3
958
Normal
0.3
863
Tumor
0.3
258
Normal
0.3
984
Normal
0.3
375
Tumor
0.3
536
Normal
0.3
922
Normal
0.3
916
Normal
0.3
737
Tumor
0.3
641
Tumor
0.3
314
Normal
0.3
271
Tumor
0.3
722
Normal
0.3
746
Normal
0.3
232
Normal
0.3
955
Tumor
0.3
728
Normal
0.3
357
Tumor
0.3
642
Normal
0.3
963
Tumor
0.3
696
Normal
0.3
514
Normal
0.3
564
Normal
0.3
132
Normal
0.3
488
Normal
0.3
698
Normal
0.3
358
Normal
0.3
484
Normal
0.3
944
Normal
0.3
1046
Normal
0.3
376
Normal
0.2
223
Tumor
0.2
1041
Tumor
0.2
142
Normal
0.2
878
Normal
0.2
882
Normal
0.2
448
Normal
0.2
981
Tumor
0.2
278
Normal
0.2
517
Tumor
0.2
573
Tumor
0.2
137
Tumor
0.2
786
Normal
0.2
526
Normal
0.2
858
Normal
0.2
127
Tumor
0.2
332
Normal
0.2
965
Tumor
0.2
724
Normal
0.2
493
Tumor
0.2
1021
Tumor
0.2
953
Tumor
0.2
368
Normal
0.2
535
Tumor
0.2
298
Normal
0.2
695
Tumor
0.2
172
Normal
0.2
665
Tumor
0.2
1028
Normal
0.2
483
Tumor
0.2
477
Tumor
0.2
715
Tumor
0.2
272
Normal
0.2
186
Normal
0.2
123
Tumor
0.2
823
Tumor
0.2
228
Normal
0.2
452
Normal
0.2
392
Normal
0.2
956
Normal
0.2
444
Normal
0.2
366
Normal
0.2
365
Tumor
0.2
388
Normal
0.2
1045
Tumor
0.2
472
Normal
0.2
394
Normal
0.2
466
Normal
0.2
964
Normal
0.2
923
Tumor
0.2
516
Normal
0.1
713
Tumor
0.1
473
Tumor
0.1
148
Normal
0.1
554
Normal
0.1
952
Normal
0.1
861
Tumor
0.1
534
Normal
0.1
744
Normal
0.1
268
Normal
0.1
492
Normal
0.1
1025
Tumor
0.1
756
Normal
0.1
267
Tumor
0.1
463
Tumor
0.1
474
Normal
0.1
627
Tumor
0.1
277
Tumor
0.1
778
Normal
0.1
262
Normal
0.1
546
Normal
0.1
966
Normal
0.1
1026
Normal
0.1
647
Tumor
0.1
666
Normal
0.1
196
Normal
0.1
617
Tumor
0.1
162
Normal
0.1
422
Normal
0.1
128
Normal
0.1
523
Tumor
0.1
664
Normal
0.1
344
Normal
0.1
136
Normal
0.1
464
Normal
0.1
815
Tumor
0.1
443
Tumor
0.1
574
Normal
0.1
926
Normal
0.1
411
Tumor
0.1
138
Normal
0.0
424
Normal
0.0
524
Normal
0.0
662
Normal
0.0
414
Normal
0.0
513
Tumor
0.0
976
Normal
0.0
212
Normal
0.0
567
Tumor
0.0
913
Tumor
0.0
286
Normal
0.0
527
Tumor
0.0
957
Tumor
0.0
187
Tumor
0.0
883
Tumor
0.0
518
Normal
0.0
312
Normal
0.0
982
Normal
0.0
918
Normal
0.0
465
Tumor
0.0
866
Normal
0.0
327
Tumor
0.0
224
Normal
0.0
352
Normal
0.0
537
Tumor
0.0
661
Tumor
0.0
873
Tumor
0.0
147
Tumor
0.0
362
Normal
0.0
354
Normal
0.0
533
Tumor
0.0
557
Tumor
0.0
222
Normal
0.0
423
Tumor
0.0
1015
Tumor
0.0
367
Tumor
0.0
227
Tumor
0.0
284
Normal
-0.1
188
Normal
-0.1
436
Normal
-0.1
777
Tumor
-0.1
697
Tumor
-0.1
131
Tumor
-0.1
385
Tumor
-0.1
433
Tumor
-0.1
515
Tumor
-0.1
356
Normal
-0.1
396
Normal
-0.1
468
Normal
-0.1
538
Normal
-0.1
1016
Normal
-0.1
864
Normal
-0.1
145
Tumor
-0.1
743
Tumor
-0.1
553
Tumor
-0.1
393
Tumor
-0.2
563
Tumor
-0.2
297
Tumor
-0.2
428
Normal
-0.2
114
Normal
-0.2
384
Normal
-0.2
195
Tumor
-0.2
412
Normal
-0.2
434
Normal
-0.2
328
Normal
-0.2
111
Normal
-0.2
421
Tumor
-0.2
1031
Tumor
-0.2
456
Normal
-0.2
213
Tumor
-0.2
528
Normal
-0.2
391
Tumor
-0.2
146
Normal
-0.2
914
Normal
-0.2
432
Normal
-0.2
925
Tumor
-0.2
364
Normal
-0.2
943
Tumor
-0.2
865
Tumor
-0.2
451
Tumor
-0.2
446
Normal
-0.2
124
Normal
-0.2
1042
Normal
-0.2
185
Tumor
-0.3
214
Normal
-0.3
672
Normal
-0.3
867
Tumor
-0.3
431
Tumor
-0.3
353
Tumor
-0.3
218
Normal
-0.3
217
Tumor
-0.3
462
Normal
-0.3
874
Normal
-0.3
447
Tumor
-0.3
386
Normal
-0.3
497
Tumor
-0.3
525
Tumor
-0.3
311
Tumor
-0.3
487
Tumor
-0.3
813
Tumor
-0.3
126
Normal
-0.3
191
Tumor
-0.4
455
Tumor
-0.4
967
Tumor
-0.4
491
Tumor
-0.4
343
Tumor
-0.4
113
Tumor
-0.4
425
Tumor
-0.4
125
Tumor
-0.4
416
Normal
-0.4
467
Tumor
-0.4
975
Tumor
-0.4
917
Tumor
-0.4
881
Tumor
-0.5
671
Tumor
-0.5
545
Tumor
-0.5
283
Tumor
-0.5
135
Tumor
-0.5
161
Tumor
-0.5
383
Tumor
-0.5
211
Tumor
-0.5
415
Tumor
-0.5
192
Normal
-0.5
663
Tumor
-0.6
413
Tumor
-0.6
814
Normal
-0.6
363
Tumor
-0.6
817
Tumor
-0.6
395
Tumor
-0.7
471
Tumor
-0.7
331
Tumor
-0.7
427
Tumor
-0.8
141
Tumor
-0.8
221
Tumor
-0.8
355
Tumor
-0.9
285
Tumor
-1.0
112
Tumor
-1.1
461
Tumor
-1.3
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
