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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
INTS1 is potential prognostic, high expression is unfavorable in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
15.9
Number of samples
362
Samples
Sample
Description
TPM
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
62.2
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
54.1
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
42.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
40.1
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
39.0
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
37.6
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
37.5
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
37.2
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
37.1
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
37.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
34.9
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
33.6
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
32.4
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
32.2
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
31.7
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
31.3
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
30.8
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
30.7
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
30.7
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
30.2
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
30.1
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
29.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
29.8
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
29.4
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
29.1
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
29.0
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
28.4
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
28.3
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
28.3
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
28.3
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
27.9
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
27.7
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
26.9
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
26.8
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
26.3
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
26.3
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
26.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
26.1
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
25.9
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
25.9
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
25.8
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
25.6
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
25.5
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
25.1
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
25.0
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
24.8
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
24.6
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
24.5
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
24.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
24.3
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
24.2
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
24.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
24.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
23.8
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
23.6
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
23.2
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
23.1
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
23.0
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
22.9
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
22.7
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
22.2
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
22.0
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
21.7
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
21.7
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
21.5
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
21.4
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
21.3
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
21.2
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
21.2
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
21.0
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
21.0
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
20.9
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
20.9
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
20.7
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
20.6
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
20.5
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
20.4
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
20.4
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
20.4
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
20.3
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
20.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
20.1
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
20.0
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
20.0
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
19.9
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
19.8
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
19.7
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
19.7
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
19.4
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
19.3
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
19.3
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
19.3
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
19.1
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
19.1
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
19.1
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
19.0
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
19.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
19.0
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
19.0
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
18.8
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
18.8
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
18.4
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
18.4
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
18.2
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
18.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
18.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
17.8
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
17.8
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
17.8
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
17.7
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
17.7
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
17.6
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
17.6
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
17.5
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
17.5
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
17.4
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
17.3
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
17.3
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
17.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
17.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
17.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
17.1
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
17.1
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
17.1
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
17.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
17.0
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
16.9
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
16.9
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
16.7
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
16.7
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
16.7
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
16.6
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
16.6
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
16.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
16.6
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
16.6
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
16.6
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
16.5
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
16.5
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
16.5
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
16.5
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
16.4
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
16.4
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
16.4
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
16.4
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
16.3
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
16.2
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
16.2
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
16.2
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
16.2
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
16.2
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
16.1
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
16.0
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
16.0
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
16.0
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
15.9
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
15.8
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
15.7
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
15.7
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
15.6
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
15.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
15.5
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
15.4
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
15.4
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
15.3
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
15.3
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
15.3
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
15.2
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
15.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
15.2
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
15.0
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
15.0
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
15.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
14.8
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
14.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
14.7
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
14.7
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
14.7
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
14.7
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
14.6
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
14.6
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
14.6
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
14.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
14.6
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
14.5
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
14.5
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
14.5
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
14.4
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
14.3
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
14.3
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
14.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
14.1
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
14.0
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
14.0
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
14.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
13.9
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
13.9
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
13.9
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
13.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
13.7
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
13.6
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
13.6
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
13.5
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
13.4
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
13.3
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
13.3
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
13.3
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
13.2
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
13.0
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
13.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
12.9
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
12.9
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
12.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
12.9
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
12.8
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
12.8
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
12.8
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
12.8
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
12.7
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
12.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
12.7
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
12.7
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
12.6
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
12.5
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
12.5
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
12.5
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
12.5
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
12.5
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
12.5
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
12.5
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
12.5
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
12.4
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
12.4
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
12.4
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
12.4
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
12.3
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
12.3
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
12.2
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
12.2
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
12.2
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
12.1
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
11.9
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
11.9
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
11.9
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
11.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
11.8
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
11.8
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
11.8
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
11.8
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
11.6
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
11.5
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
11.5
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
11.4
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
11.4
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
11.4
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
11.4
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
11.3
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
11.3
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
11.3
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
11.2
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
11.2
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
11.2
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
11.2
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
11.1
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
11.0
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
10.9
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
10.9
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
10.9
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
10.9
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
10.8
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
10.8
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
10.7
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
10.7
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
10.7
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
10.6
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
10.6
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
10.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
10.4
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
10.4
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
10.4
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
10.4
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
10.3
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
10.3
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
10.3
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
10.2
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
10.2
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
10.1
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
10.1
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
10.0
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
10.0
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
10.0
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
9.8
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
9.8
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
9.8
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
9.7
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
9.7
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
9.7
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
9.6
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
9.5
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
9.5
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
9.5
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
9.3
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
9.2
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
9.1
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
9.0
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
9.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
9.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
9.0
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
8.9
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
8.9
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
8.8
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
8.8
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
8.8
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
8.7
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
8.6
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
8.5
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
8.4
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
8.4
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
8.3
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
8.2
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
8.1
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
8.0
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
8.0
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
8.0
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
7.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
7.7
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
7.6
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
7.2
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
7.0
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
7.0
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
6.8
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
6.8
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
6.4
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
6.2
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
6.2
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
6.2
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
6.1
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
6.1
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
6.0
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
5.9
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
5.9
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
5.8
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
5.7
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
5.7
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
5.6
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
5.5
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
5.4
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
5.3
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
5.1
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
5.0
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
4.8
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
4.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
4.5
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
4.5
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
4.2
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
4.0
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
4.0
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
3.8
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
3.6
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
2.6
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
2.6
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
INTS1 is not prognostic in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
11.9
Number of samples
231
Samples
Sample
Description
TPM
DO48747
0 years, male, NA, stage:3, alive, 540 days
40.6
DO45245
0 years, female, NA, stage:2, dead, 240 days
29.9
DO50799
0 years, female, NA, stage:2, alive, 540 days
27.9
DO45159
0 years, male, NA, stage:3, alive, 1470 days
27.6
DO45173
0 years, male, NA, stage:3, alive, 1170 days
26.6
DO23540
0 years, male, NA, stage:1, alive, 750 days
25.9
DO23532
0 years, female, NA, stage:1, alive, 960 days
25.6
DO23526
0 years, male, NA, stage:3, alive, 1050 days
24.2
DO50839
0 years, female, NA, stage:3, alive, 330 days
22.3
DO23519
0 years, male, NA, stage:3, alive, 630 days
22.2
DO50814
0 years, male, NA, stage:3, alive, 420 days
22.0
DO23508
0 years, female, NA, stage:2, alive, 390 days
21.9
DO23525
0 years, male, NA, stage:4, alive, 1050 days
21.8
DO50844
0 years, male, NA, stage:4, alive, 300 days
21.1
DO45231
0 years, male, NA, stage:2, alive, 930 days
20.7
DO48717
0 years, male, NA, stage:4, dead, 180 days
20.6
DO45305
0 years, male, NA, stage:4, alive, 300 days
20.6
DO50791
0 years, female, NA, stage:1, dead, 480 days
20.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
20.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
20.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
19.7
DO45157
0 years, male, NA, stage:2, alive, 1980 days
19.5
DO45189
0 years, female, NA, stage:2, alive, 1200 days
19.3
DO50804
0 years, male, NA, stage:2, alive, 720 days
19.0
DO45267
0 years, male, NA, stage:3, dead, 570 days
19.0
DO45125
0 years, male, NA, stage:3, alive, 1680 days
18.7
DO45299
0 years, female, NA, stage:1, alive, 1440 days
18.7
DO45127
0 years, male, NA, stage:3, dead, 420 days
18.5
DO45093
0 years, male, NA, stage:2, dead, 720 days
18.4
DO45155
0 years, male, NA, stage:2, alive, 2160 days
18.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
18.1
DO45185
0 years, male, NA, stage:2, alive, 600 days
18.0
DO50829
0 years, male, NA, stage:3, alive, 570 days
17.8
DO45193
0 years, female, NA, stage:4, dead, 120 days
17.7
DO45307
0 years, female, NA, stage:4, dead, 240 days
17.7
DO45207
0 years, male, NA, stage:1, alive, 1050 days
17.6
DO50809
0 years, male, NA, stage:3, dead, 720 days
17.4
DO50816
0 years, male, NA, stage:2, alive, 390 days
17.4
DO45131
0 years, male, NA, stage:4, dead, 360 days
17.4
DO48732
0 years, male, NA, stage:3, alive, 630 days
17.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
16.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
16.8
DO45101
0 years, male, NA, stage:2, alive, 1680 days
16.4
DO45209
0 years, male, NA, stage:4, alive, 1350 days
16.4
DO45263
0 years, male, NA, stage:3, dead, 270 days
16.3
DO45205
0 years, female, NA, stage:2, dead, 90 days
16.3
DO45095
0 years, male, NA, stage:2, alive, 1620 days
16.2
DO48743
0 years, female, NA, stage:2, alive, 570 days
16.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
16.0
DO45285
0 years, male, NA, stage:3, alive, 480 days
15.9
DO45139
0 years, male, NA, stage:3, alive, 1320 days
15.8
DO23521
0 years, male, NA, stage:3, alive, 1110 days
15.7
DO23518
0 years, male, NA, stage:2, alive, 1320 days
15.4
DO45217
0 years, female, NA, stage:3, dead, 270 days
15.1
DO50778
0 years, male, NA, stage:4, alive, 630 days
15.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
15.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
14.9
DO48677
0 years, male, NA, stage:3, alive, 1140 days
14.8
DO48730
0 years, female, NA, stage:2, alive, 630 days
14.8
DO23524
0 years, female, NA, stage:2, alive, 1050 days
14.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
14.6
DO45221
0 years, female, NA, stage:4, dead, 390 days
14.6
DO48751
0 years, male, NA, stage:2, dead, 480 days
14.6
DO48757
0 years, female, NA, stage:3, alive, 480 days
14.6
DO45163
0 years, male, NA, stage:2, alive, 960 days
14.6
DO45133
0 years, male, NA, stage:3, dead, 660 days
14.5
DO50798
0 years, male, NA, stage:3, dead, 30 days
14.4
DO23511
0 years, female, NA, stage:3, dead, 180 days
14.3
DO45169
0 years, male, NA, stage:3, alive, 1350 days
14.1
DO23512
0 years, male, NA, stage:1, alive, 1260 days
14.0
DO45301
0 years, male, NA, stage:2, dead, 1440 days
13.9
DO45259
0 years, male, NA, stage:3, alive, 330 days
13.6
DO23545
0 years, male, NA, stage:2, dead, 570 days
13.4
DO45197
0 years, male, NA, stage:2, alive, 1170 days
13.3
DO45287
0 years, male, NA, stage:1, alive, 390 days
13.2
DO50815
0 years, male, NA, stage:3, alive, 150 days
13.2
DO45149
0 years, female, NA, stage:2, alive, 1260 days
13.2
DO50783
0 years, male, NA, stage:3, alive, 480 days
13.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
13.0
DO48701
0 years, male, NA, stage:2, alive, 780 days
13.0
DO50819
0 years, female, NA, stage:2, alive, 510 days
12.9
DO45161
0 years, male, NA, stage:2, dead, 540 days
12.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
12.9
DO45253
0 years, male, NA, stage:2, alive, 870 days
12.8
DO50820
0 years, female, NA, stage:3, alive, 510 days
12.7
DO45281
0 years, male, NA, stage:4, alive, 750 days
12.4
DO50806
0 years, male, NA, stage:4, alive, 540 days
12.4
DO45225
0 years, male, NA, stage:1, alive, 1050 days
12.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
12.2
DO45213
0 years, male, NA, stage:1, alive, 1200 days
12.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
12.1
DO45235
0 years, female, NA, stage:1, alive, 900 days
12.1
DO23509
0 years, male, NA, stage:3, dead, 780 days
11.9
DO23528
0 years, female, NA, stage:2, alive, 1020 days
11.9
DO23529
0 years, male, NA, stage:4, alive, 930 days
11.7
DO48727
0 years, female, NA, stage:2, dead, 390 days
11.6
DO45113
0 years, male, NA, stage:3, alive, 1560 days
11.5
DO45107
0 years, female, NA, stage:2, alive, 1710 days
11.4
DO45121
0 years, male, NA, stage:3, alive, 1530 days
11.4
DO45243
0 years, female, NA, stage:3, alive, 930 days
11.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
11.3
DO23547
0 years, male, NA, stage:1, alive, 1020 days
11.3
DO45091
0 years, male, NA, stage:2, dead, 1320 days
11.3
DO23537
0 years, male, NA, stage:2, dead, 900 days
11.3
DO23527
0 years, male, NA, stage:1, alive, 1050 days
11.2
DO45117
0 years, female, NA, stage:2, dead, 1110 days
11.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
11.2
DO45105
0 years, male, NA, stage:1, alive, 1680 days
11.1
DO45165
0 years, male, NA, stage:2, alive, 690 days
11.1
DO45096
0 years, male, NA, stage:2, dead, 1290 days
11.1
DO23546
0 years, male, NA, stage:2, alive, 1050 days
11.0
DO48715
0 years, female, NA, stage:2, dead, 690 days
10.9
DO50811
0 years, male, NA, stage:1, alive, 450 days
10.9
DO45303
0 years, female, NA, stage:3, alive, 990 days
10.9
DO45215
0 years, male, NA, stage:2, alive, 1170 days
10.9
DO48733
0 years, male, NA, stage:2, alive, 600 days
10.9
DO45277
0 years, male, NA, stage:3, alive, 600 days
10.8
DO45145
0 years, male, NA, stage:3, dead, 60 days
10.6
DO45177
0 years, female, NA, stage:3, alive, 1260 days
10.5
DO45094
0 years, male, NA, stage:3, alive, 1650 days
10.4
DO48737
0 years, male, NA, stage:1, alive, 720 days
10.4
DO48736
0 years, female, NA, stage:1, alive, 600 days
10.4
DO48706
0 years, male, NA, stage:2, alive, 870 days
10.3
DO50822
0 years, male, NA, stage:2, alive, 510 days
10.3
DO45092
0 years, male, NA, stage:4, dead, 1200 days
10.2
DO50845
0 years, male, NA, stage:3, alive, 210 days
10.2
DO45211
0 years, male, NA, stage:3, alive, 240 days
10.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
10.2
DO23538
0 years, male, NA, stage:2, alive, 450 days
10.1
DO48681
0 years, male, NA, stage:2, alive, 900 days
10.1
DO50850
0 years, male, NA, stage:3, alive, 720 days
9.9
DO50818
0 years, male, NA, stage:2, alive, 510 days
9.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
9.8
DO45229
0 years, male, NA, stage:1, alive, 990 days
9.8
DO23548
0 years, female, NA, stage:1, alive, 840 days
9.8
DO45203
0 years, female, NA, stage:2, alive, 1170 days
9.7
DO50802
0 years, male, NA, stage:2, alive, 930 days
9.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
9.6
DO50793
0 years, male, NA, stage:4, alive, 540 days
9.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
9.6
DO23533
0 years, male, NA, stage:2, alive, 900 days
9.5
DO45099
0 years, male, NA, stage:3, alive, 1590 days
9.5
DO23535
0 years, male, NA, stage:1, alive, 960 days
9.4
DO45187
0 years, female, NA, stage:1, alive, 1260 days
9.4
DO45123
0 years, female, NA, stage:2, dead, 570 days
9.4
DO48700
0 years, female, NA, stage:2, alive, 810 days
9.4
DO23549
0 years, male, NA, stage:3, alive, 990 days
9.3
DO50857
0 years, male, NA, stage:2, alive, 210 days
9.3
DO50859
0 years, male, NA, stage:2, alive, 180 days
9.3
DO48693
0 years, male, NA, stage:2, alive, 900 days
9.3
DO45265
0 years, male, NA, stage:3, alive, 1020 days
9.2
DO48723
0 years, male, NA, stage:1, alive, 600 days
9.2
DO45251
0 years, female, NA, stage:2, alive, 900 days
9.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
9.1
DO23541
0 years, male, NA, stage:2, alive, 930 days
9.0
DO48719
0 years, male, NA, stage:2, alive, 690 days
9.0
DO45199
0 years, female, NA, stage:2, alive, 1350 days
8.9
DO23523
0 years, male, NA, stage:3, alive, 1080 days
8.9
DO48742
0 years, male, NA, stage:2, alive, 600 days
8.9
DO45297
0 years, female, NA, stage:4, dead, 1260 days
8.9
DO23536
0 years, male, NA, stage:2, alive, 930 days
8.7
DO45103
0 years, male, NA, stage:3, alive, 450 days
8.7
DO45183
0 years, female, NA, stage:2, dead, 570 days
8.7
DO50855
0 years, male, NA, stage:2, alive, 570 days
8.7
DO50776
0 years, male, NA, stage:1, alive, 690 days
8.7
DO48712
0 years, male, NA, stage:2, alive, 810 days
8.6
DO48672
0 years, male, NA, stage:2, alive, 450 days
8.6
DO45283
0 years, male, NA, stage:3, alive, 510 days
8.6
DO45143
0 years, male, NA, stage:3, alive, 1290 days
8.6
DO23530
0 years, male, NA, stage:4, dead, 180 days
8.6
DO48697
0 years, female, NA, stage:2, dead, 810 days
8.6
DO45097
0 years, male, NA, stage:3, alive, 1620 days
8.5
DO50787
0 years, male, NA, stage:3, alive, 480 days
8.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
8.3
DO45141
0 years, male, NA, stage:2, alive, 1320 days
8.3
DO48759
0 years, male, NA, stage:3, alive, 720 days
8.3
DO45191
0 years, female, NA, stage:2, alive, 1200 days
8.3
DO50785
0 years, male, NA, stage:4, dead, 90 days
8.1
DO48725
0 years, male, NA, stage:1, alive, 780 days
7.8
DO45239
0 years, male, NA, stage:2, alive, 870 days
7.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
7.8
DO50805
0 years, male, NA, stage:2, alive, 690 days
7.7
DO50789
0 years, female, NA, stage:2, alive, 570 days
7.6
DO50813
0 years, male, NA, stage:2, alive, 420 days
7.6
DO45109
0 years, male, NA, stage:2, alive, 1590 days
7.5
DO48704
0 years, female, NA, stage:3, alive, 750 days
7.5
DO23542
0 years, male, NA, stage:3, alive, 960 days
7.5
DO45115
0 years, male, NA, stage:2, alive, 840 days
7.5
DO23534
0 years, male, NA, stage:2, alive, 840 days
7.4
DO48746
0 years, male, NA, stage:3, alive, 570 days
7.3
DO50817
0 years, male, NA, stage:2, alive, 390 days
7.3
DO48721
0 years, female, NA, stage:1, alive, 900 days
7.2
DO50807
0 years, male, NA, stage:1, alive, 540 days
7.2
DO50774
0 years, female, NA, stage:2, alive, 720 days
6.9
DO45233
0 years, male, NA, stage:3, alive, 900 days
6.9
DO45179
0 years, female, NA, stage:2, alive, 600 days
6.8
DO45223
0 years, male, NA, stage:4, alive, 1020 days
6.8
DO45227
0 years, female, NA, stage:2, alive, 1020 days
6.8
DO45181
0 years, female, NA, stage:2, alive, 1200 days
6.7
DO45111
0 years, male, NA, stage:2, alive, 1590 days
6.7
DO45247
0 years, female, NA, stage:2, alive, 210 days
6.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
6.5
DO45241
0 years, male, NA, stage:1, alive, 1080 days
6.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
6.5
DO45135
0 years, male, NA, stage:1, alive, 1410 days
6.4
DO23539
0 years, male, NA, stage:1, alive, 1110 days
6.2
DO227643
0 years, male, NA, stage:2, alive, 1260 days
5.9
DO48716
0 years, male, NA, stage:2, alive, 720 days
5.7
DO23550
0 years, male, NA, stage:1, alive, 990 days
5.7
DO227801
0 years, female, NA, stage:1, alive, 660 days
5.7
DO48761
0 years, male, NA, stage:2, alive, 870 days
5.6
DO23514
0 years, male, NA, stage:2, alive, 1290 days
5.5
DO45167
0 years, male, NA, stage:2, dead, 1440 days
5.5
DO50832
0 years, male, NA, stage:3, alive, 90 days
5.5
DO45201
0 years, male, NA, stage:1, alive, 900 days
5.4
DO50800
0 years, male, NA, stage:2, alive, 510 days
5.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
5.4
DO45237
0 years, male, NA, stage:2, alive, 900 days
5.2
DO45129
0 years, male, NA, stage:3, alive, 1470 days
5.1
DO48760
0 years, female, NA, stage:2, alive, 690 days
5.0
DO45119
0 years, male, NA, stage:3, dead, 510 days
4.9
DO45261
0 years, male, NA, stage:3, alive, 990 days
4.8
DO23516
0 years, male, NA, stage:3, dead, 20 days
4.3
DO23552
0 years, female, NA, stage:1, alive, 810 days
4.3
DO48674
0 years, male, NA, stage:2, alive, 1260 days
4.2
DO23531
0 years, female, NA, stage:3, alive, 900 days
4.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
3.8
DO50808
0 years, male, NA, stage:2, alive, 570 days
3.7
DO23517
0 years, male, NA, stage:2, alive, 1200 days
3.5
DO45195
0 years, male, NA, stage:1, alive, 390 days
3.3
DO23551
0 years, male, NA, stage:3, dead, 150 days
3.1
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
743
Tumor
0.9
331
Tumor
0.8
131
Tumor
0.8
685
Tumor
0.7
411
Tumor
0.6
877
Tumor
0.6
313
Tumor
0.6
277
Tumor
0.6
467
Tumor
0.6
271
Tumor
0.6
427
Tumor
0.6
545
Tumor
0.6
1013
Tumor
0.5
211
Tumor
0.5
515
Tumor
0.5
1031
Tumor
0.5
527
Tumor
0.5
113
Tumor
0.5
951
Tumor
0.4
1025
Tumor
0.4
395
Tumor
0.4
385
Tumor
0.4
351
Tumor
0.4
881
Tumor
0.4
865
Tumor
0.4
967
Tumor
0.4
463
Tumor
0.4
357
Tumor
0.4
965
Tumor
0.4
297
Tumor
0.4
937
Tumor
0.4
227
Tumor
0.4
123
Tumor
0.4
647
Tumor
0.4
663
Tumor
0.4
671
Tumor
0.4
665
Tumor
0.3
523
Tumor
0.3
431
Tumor
0.3
815
Tumor
0.3
413
Tumor
0.3
375
Tumor
0.3
777
Tumor
0.3
517
Tumor
0.3
1021
Tumor
0.3
497
Tumor
0.3
533
Tumor
0.3
461
Tumor
0.3
737
Tumor
0.3
957
Tumor
0.3
573
Tumor
0.3
813
Tumor
0.3
1015
Tumor
0.3
817
Tumor
0.3
983
Tumor
0.2
473
Tumor
0.2
191
Tumor
0.2
425
Tumor
0.2
641
Tumor
0.2
1027
Tumor
0.2
483
Tumor
0.2
285
Tumor
0.2
367
Tumor
0.2
221
Tumor
0.2
491
Tumor
0.2
112
Tumor
0.2
126
Normal
0.2
943
Tumor
0.2
217
Tumor
0.2
267
Tumor
0.2
921
Tumor
0.2
443
Tumor
0.2
147
Tumor
0.2
447
Tumor
0.2
196
Normal
0.2
161
Tumor
0.2
257
Tumor
0.2
192
Normal
0.2
977
Tumor
0.2
355
Tumor
0.2
125
Tumor
0.2
917
Tumor
0.2
187
Tumor
0.2
814
Normal
0.2
727
Tumor
0.2
343
Tumor
0.2
145
Tumor
0.2
455
Tumor
0.2
383
Tumor
0.1
724
Normal
0.1
672
Normal
0.1
137
Tumor
0.1
213
Tumor
0.1
471
Tumor
0.1
365
Tumor
0.1
124
Normal
0.1
873
Tumor
0.1
465
Tumor
0.1
883
Tumor
0.1
135
Tumor
0.1
314
Normal
0.1
353
Tumor
0.1
721
Tumor
0.1
445
Tumor
0.1
435
Tumor
0.1
186
Normal
0.1
218
Normal
0.1
923
Tumor
0.1
615
Tumor
0.1
136
Normal
0.1
128
Normal
0.1
332
Normal
0.1
222
Normal
0.1
188
Normal
0.1
1043
Tumor
0.1
195
Tumor
0.1
563
Tumor
0.1
553
Tumor
0.1
344
Normal
0.1
755
Tumor
0.1
146
Normal
0.1
387
Tumor
0.1
535
Tumor
0.1
341
Tumor
0.1
756
Normal
0.1
537
Tumor
0.1
713
Tumor
0.1
574
Normal
0.1
925
Tumor
0.1
393
Tumor
0.1
493
Tumor
0.1
258
Normal
0.1
327
Tumor
0.1
232
Normal
0.1
666
Normal
0.1
715
Tumor
0.1
557
Tumor
0.1
635
Tumor
0.1
884
Normal
0.1
185
Tumor
0.1
114
Normal
0.1
138
Normal
0.1
963
Tumor
0.1
858
Normal
0.1
148
Normal
0.1
571
Tumor
0.1
223
Tumor
0.1
953
Tumor
0.1
851
Tumor
0.1
272
Normal
0.0
434
Normal
0.0
568
Normal
0.0
141
Tumor
0.0
172
Normal
0.0
564
Normal
0.0
661
Tumor
0.0
127
Tumor
0.0
363
Tumor
0.0
214
Normal
0.0
312
Normal
0.0
567
Tumor
0.0
132
Normal
0.0
664
Normal
0.0
823
Tumor
0.0
298
Normal
0.0
912
Normal
0.0
456
Normal
0.0
648
Normal
0.0
627
Tumor
0.0
111
Normal
0.0
352
Normal
0.0
468
Normal
0.0
662
Normal
0.0
464
Normal
0.0
142
Normal
0.0
697
Tumor
0.0
913
Tumor
0.0
391
Tumor
0.0
452
Normal
0.0
975
Tumor
0.0
356
Normal
0.0
1041
Tumor
0.0
915
Tumor
0.0
171
Tumor
N/A
636
Normal
0.0
268
Normal
0.0
862
Normal
0.0
433
Tumor
0.0
698
Normal
0.0
283
Tumor
0.0
368
Normal
0.0
818
Normal
0.0
311
Tumor
0.0
618
Normal
0.0
572
Normal
0.0
866
Normal
0.0
415
Tumor
0.0
642
Normal
0.0
354
Normal
0.0
616
Normal
0.0
863
Tumor
0.0
261
Tumor
0.0
778
Normal
0.0
617
Tumor
0.0
786
Normal
0.0
423
Tumor
0.0
358
Normal
0.0
342
Normal
0.0
262
Normal
0.0
558
Normal
0.0
451
Tumor
0.0
1026
Normal
0.0
388
Normal
0.0
1042
Normal
0.0
477
Tumor
0.0
964
Normal
0.0
466
Normal
0.0
396
Normal
0.0
914
Normal
0.0
436
Normal
0.0
867
Tumor
0.0
982
Normal
0.0
278
Normal
0.0
426
Normal
0.0
628
Normal
0.0
361
Tumor
0.0
984
Normal
0.0
487
Tumor
0.0
536
Normal
0.0
882
Normal
-0.1
864
Normal
-0.1
162
Normal
-0.1
524
Normal
-0.1
695
Tumor
-0.1
944
Normal
-0.1
824
Normal
-0.1
785
Tumor
-0.1
432
Normal
-0.1
328
Normal
-0.1
874
Normal
-0.1
742
Normal
-0.1
392
Normal
-0.1
386
Normal
-0.1
364
Normal
-0.1
376
Normal
-0.1
722
Normal
-0.1
938
Normal
-0.1
554
Normal
-0.1
868
Normal
-0.1
412
Normal
-0.1
518
Normal
-0.1
1046
Normal
-0.1
366
Normal
-0.1
1016
Normal
-0.1
978
Normal
-0.1
878
Normal
-0.1
514
Normal
-0.1
1045
Tumor
-0.1
696
Normal
-0.1
526
Normal
-0.1
1014
Normal
-0.1
728
Normal
-0.1
482
Normal
-0.1
857
Tumor
-0.1
284
Normal
-0.1
968
Normal
-0.1
738
Normal
-0.1
416
Normal
-0.1
362
Normal
-0.1
444
Normal
-0.1
916
Normal
-0.1
966
Normal
-0.1
228
Normal
-0.1
1032
Normal
-0.1
462
Normal
-0.1
481
Tumor
-0.1
421
Tumor
-0.1
428
Normal
-0.1
394
Normal
-0.1
384
Normal
-0.1
492
Normal
-0.1
446
Normal
-0.1
534
Normal
-0.1
1028
Normal
-0.1
474
Normal
-0.1
414
Normal
-0.1
922
Normal
-0.1
1044
Normal
-0.1
955
Tumor
-0.1
954
Normal
-0.1
746
Normal
-0.1
212
Normal
-0.1
424
Normal
-0.1
926
Normal
-0.1
816
Normal
-0.1
422
Normal
-0.1
1022
Normal
-0.1
478
Normal
-0.1
976
Normal
-0.1
498
Normal
-0.1
286
Normal
-0.1
744
Normal
-0.1
528
Normal
-0.1
686
Normal
-0.1
224
Normal
-0.1
525
Tumor
-0.1
538
Normal
-0.2
472
Normal
-0.2
852
Normal
-0.2
494
Normal
-0.2
714
Normal
-0.2
516
Normal
-0.2
448
Normal
-0.2
958
Normal
-0.2
546
Normal
-0.2
745
Tumor
-0.2
918
Normal
-0.2
956
Normal
-0.2
484
Normal
-0.2
488
Normal
-0.2
716
Normal
-0.2
924
Normal
-0.2
723
Tumor
-0.2
911
Tumor
-0.2
952
Normal
-0.2
861
Tumor
-0.2
231
Tumor
-0.2
981
Tumor
-0.3
513
Tumor
-0.3
741
Tumor
-0.4
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
