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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DEFB1 is not prognostic in Liver Hepatocellular Carcinoma (TCGA)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
195.6
Number of samples
362
Samples
Sample
Description
TPM
TCGA-DD-A1EH-01A
0 years, male, white, stage:Stage III, alive, 1495 days
3706.5
TCGA-G3-A25T-01A
0 years, female, white, stage:Stage IIIA, alive, 1553 days
3357.9
TCGA-G3-A25Y-01A
0 years, female, asian, stage:Stage I, dead, 452 days
3209.9
TCGA-DD-AAE0-01A
0 years, female, asian, stage:Stage IIIA, alive, 555 days
2626.2
TCGA-FV-A3I0-01A
0 years, female, white, stage:Stage II, alive, 848 days
2062.7
TCGA-WQ-A9G7-01A
0 years, female, white, stage:'--, alive, 30 days
1904.2
TCGA-DD-AADW-01A
0 years, male, asian, stage:Stage I, alive, 587 days
1684.1
TCGA-WX-AA47-01A
0 years, female, white, stage:Stage IIIA, dead, 556 days
1443.7
TCGA-DD-AADJ-01A
0 years, female, asian, stage:Stage I, alive, 1066 days
1349.2
TCGA-G3-A25Z-01A
0 years, male, asian, stage:Stage I, alive, 655 days
1257.0
TCGA-G3-A3CK-01A
0 years, male, asian, stage:Stage I, alive, 585 days
1256.1
TCGA-DD-AA3A-01A
0 years, female, white, stage:Stage I, dead, 410 days
1146.2
TCGA-DD-A1EC-01A
0 years, female, white, stage:Stage I, alive, 602 days
986.4
TCGA-FV-A23B-01A
0 years, female, white, stage:Stage II, dead, 1852 days
955.5
TCGA-K7-A6G5-01A
0 years, male, white, stage:Stage I, alive, 512 days
940.6
TCGA-DD-AACX-01A
0 years, male, asian, stage:Stage II, alive, 170 days
913.5
TCGA-CC-5261-01A
0 years, male, asian, stage:Stage II, dead, 97 days
900.2
TCGA-DD-A4NB-01A
0 years, male, white, stage:Stage I, alive, 989 days
893.1
TCGA-5R-AA1D-01A
0 years, female, white, stage:Stage IIIA, alive, 449 days
887.1
TCGA-DD-AAEK-01A
0 years, male, asian, stage:Stage II, alive, 1067 days
851.7
TCGA-DD-AACU-01A
0 years, male, asian, stage:Stage I, alive, 1567 days
849.5
TCGA-DD-AADK-01A
0 years, female, asian, stage:Stage II, alive, 1049 days
840.9
TCGA-G3-A7M7-01A
0 years, male, white, stage:Stage I, alive, 361 days
823.5
TCGA-CC-5260-01A
0 years, female, asian, stage:Stage IIIC, dead, 87 days
809.2
TCGA-ED-A66Y-01A
0 years, female, asian, stage:Stage IIIA, dead, 296 days
780.3
TCGA-DD-A4NN-01A
0 years, female, white, stage:Stage I, dead, 899 days
778.5
TCGA-DD-AADY-01A
0 years, female, asian, stage:Stage I, alive, 555 days
774.5
TCGA-EP-A3RK-01A
0 years, male, white, stage:Stage IIIA, alive, 363 days
773.9
TCGA-DD-AAVW-01A
0 years, male, asian, stage:Stage I, alive, 2317 days
773.5
TCGA-XR-A8TC-01A
0 years, female, white, stage:Stage I, alive, 1339 days
716.1
TCGA-CC-5262-01A
0 years, male, asian, stage:Stage IIIC, dead, 103 days
697.5
TCGA-2Y-A9H2-01A
0 years, female, white, stage:Stage I, alive, 1731 days
677.1
TCGA-ED-A8O5-01A
0 years, female, asian, stage:Stage IIIA, alive, 406 days
599.5
TCGA-DD-AADL-01A
0 years, male, asian, stage:Stage I, alive, 636 days
590.1
TCGA-BC-A10Q-01A
0 years, female, white, stage:'--, dead, 1135 days
588.6
TCGA-G3-A25X-01A
0 years, male, asian, stage:Stage II, alive, 1779 days
575.6
TCGA-EP-A2KC-01A
0 years, male, black or african american, stage:Stage I, dead, 19 days
559.9
TCGA-2Y-A9GS-01A
0 years, male, white, stage:'--, dead, 724 days
524.8
TCGA-DD-AADG-01A
0 years, male, asian, stage:Stage IIIA, alive, 1145 days
507.3
TCGA-FV-A3R3-01A
0 years, female, white, stage:Stage I, dead, 366 days
498.1
TCGA-DD-A1ED-01A
0 years, male, white, stage:Stage I, alive, 2301 days
479.5
TCGA-ED-A627-01A
0 years, male, white, stage:Stage I, alive, 423 days
473.2
TCGA-UB-AA0U-01A
0 years, male, white, stage:Stage II, alive, 327 days
440.0
TCGA-GJ-A6C0-01A
0 years, female, white, stage:Stage II, dead, 31 days
439.1
TCGA-G3-AAUZ-01A
0 years, male, stage:Stage I, alive, 480 days
439.0
TCGA-K7-AAU7-01A
0 years, male, white, stage:Stage II, alive, 359 days
425.6
TCGA-DD-A3A1-01A
0 years, male, stage:Stage IIIA, dead, 233 days
419.7
TCGA-O8-A75V-01A
0 years, male, stage:Stage I, alive, 538 days
406.7
TCGA-DD-AAVU-01A
0 years, male, asian, stage:Stage II, alive, 2202 days
405.5
TCGA-ED-A7PZ-01A
0 years, male, asian, stage:Stage II, alive, 6 days
403.9
TCGA-2Y-A9H1-01A
0 years, male, white, stage:Stage I, dead, 1229 days
393.5
TCGA-MI-A75C-01A
0 years, male, white, stage:Stage I, alive, 291 days
393.1
TCGA-DD-AACK-01A
0 years, male, asian, stage:Stage I, alive, 9 days
391.9
TCGA-DD-AAVR-01A
0 years, male, asian, stage:Stage I, alive, 2513 days
384.5
TCGA-5C-A9VH-01A
0 years, male, white, stage:Stage I, alive, 322 days
363.7
TCGA-HP-A5MZ-01A
0 years, male, stage:Stage I, dead, 91 days
363.6
TCGA-ZP-A9D1-01A
0 years, female, white, stage:'--, alive, 21 days
362.2
TCGA-ZS-A9CD-01A
0 years, male, white, stage:Stage II, dead, 1386 days
356.6
TCGA-DD-AAVZ-01A
0 years, male, asian, stage:Stage I, alive, 1900 days
356.2
TCGA-BC-A10R-01A
0 years, female, white, stage:'--, dead, 308 days
350.6
TCGA-G3-A25U-01A
0 years, female, asian, stage:Stage I, alive, 1636 days
344.7
TCGA-DD-AADO-01A
0 years, male, asian, stage:Stage I, alive, 453 days
337.5
TCGA-BD-A3ER-01A
0 years, male, white, stage:Stage II, alive, 1115 days
335.8
TCGA-DD-A1EI-01A
0 years, male, asian, stage:Stage I, alive, 183 days
334.9
TCGA-MR-A8JO-01A
0 years, male, white, stage:Stage I, alive, 330 days
334.5
TCGA-DD-AAVS-01A
0 years, male, asian, stage:Stage I, alive, 1823 days
334.2
TCGA-LG-A9QD-01A
0 years, male, white, stage:Stage IIIA, alive, 366 days
333.7
TCGA-ED-A4XI-01A
0 years, male, asian, stage:Stage II, alive, 819 days
316.8
TCGA-FV-A2QQ-01A
0 years, male, white, stage:Stage I, alive, 729 days
310.0
TCGA-DD-AACF-01A
0 years, male, asian, stage:Stage I, dead, 365 days
307.3
TCGA-DD-A4NP-01A
0 years, male, white, stage:Stage I, alive, 3308 days
300.4
TCGA-DD-A1EK-01A
0 years, female, white, stage:Stage IVB, dead, 558 days
295.9
TCGA-BC-A10X-01A
0 years, female, white, stage:Stage IIIA, dead, 770 days
295.7
TCGA-DD-A11D-01A
0 years, female, white, stage:Stage I, dead, 1560 days
295.1
TCGA-CC-A3MB-01A
0 years, male, asian, stage:Stage IIIA, dead, 315 days
280.9
TCGA-G3-A3CI-01A
0 years, male, white, stage:Stage I, alive, 180 days
280.5
TCGA-CC-A8HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 140 days
277.4
TCGA-2Y-A9H5-01A
0 years, female, white, stage:Stage I, dead, 555 days
275.2
TCGA-DD-A4NE-01A
0 years, female, white, stage:Stage IIIA, dead, 660 days
273.7
TCGA-ED-A5KG-01A
0 years, female, asian, stage:Stage II, alive, 854 days
273.1
TCGA-DD-A4NA-01A
0 years, female, white, stage:Stage IIIC, alive, 1008 days
263.3
TCGA-RC-A6M5-01A
0 years, female, white, stage:Stage IVA, alive, 15 days
261.0
TCGA-DD-A3A4-01A
0 years, male, white, stage:Stage IIIA, dead, 612 days
260.3
TCGA-DD-A39Z-01A
0 years, female, stage:Stage II, dead, 601 days
257.2
TCGA-DD-AAC8-01A
0 years, male, asian, stage:Stage I, dead, 16 days
252.3
TCGA-DD-A1EJ-01A
0 years, female, white, stage:Stage IIIC, dead, 1005 days
249.6
TCGA-DD-A4NL-01A
0 years, male, white, stage:Stage I, alive, 1711 days
238.3
TCGA-DD-A116-01A
0 years, male, asian, stage:Stage IIIA, dead, 1622 days
234.9
TCGA-2Y-A9GV-01A
0 years, female, white, stage:Stage I, dead, 2532 days
218.7
TCGA-G3-A3CG-01A
0 years, male, white, stage:Stage I, alive, 673 days
209.5
TCGA-ZP-A9CY-01A
0 years, female, white, stage:'--, alive, 782 days
207.8
TCGA-DD-AADC-01A
0 years, male, asian, stage:Stage I, dead, 425 days
205.2
TCGA-BC-A10U-01A
0 years, male, white, stage:'--, dead, 837 days
204.0
TCGA-DD-AAD5-01A
0 years, male, asian, stage:Stage I, alive, 1345 days
199.4
TCGA-BC-A3KF-01A
0 years, female, white, stage:Stage I, alive, 8 days
198.1
TCGA-BC-A10W-01A
0 years, male, asian, stage:'--, dead, 91 days
192.9
TCGA-5C-AAPD-01A
0 years, male, asian, stage:Stage II, alive, 20 days
192.4
TCGA-CC-A5UD-01A
0 years, male, asian, stage:Stage IIIA, dead, 304 days
191.2
TCGA-KR-A7K0-01A
0 years, male, white, stage:Stage I, dead, 65 days
176.5
TCGA-DD-AAE3-01A
0 years, male, asian, stage:Stage I, alive, 566 days
172.9
TCGA-G3-A25V-01A
0 years, male, white, stage:Stage I, alive, 860 days
171.4
TCGA-WQ-AB4B-01A
0 years, male, white, stage:Stage II, alive, 395 days
166.2
TCGA-BC-A69H-01A
0 years, male, white, stage:Stage II, alive, 444 days
166.2
TCGA-G3-A5SM-01A
0 years, male, white, stage:Stage II, alive, 520 days
162.4
TCGA-2Y-A9GZ-01A
0 years, female, white, stage:Stage II, dead, 848 days
160.8
TCGA-DD-AAD2-01A
0 years, male, asian, stage:Stage I, alive, 658 days
158.0
TCGA-DD-AADB-01A
0 years, male, asian, stage:Stage I, alive, 1242 days
156.0
TCGA-CC-A8HV-01A
0 years, female, asian, stage:Stage II, dead, 279 days
155.5
TCGA-FV-A496-01A
0 years, female, white, stage:Stage I, alive, 10 days
153.6
TCGA-CC-A1HT-01A
0 years, male, asian, stage:Stage IIIA, dead, 101 days
143.5
TCGA-LG-A6GG-01A
0 years, female, white, stage:Stage II, alive, 387 days
139.2
TCGA-DD-A4NK-01A
0 years, female, white, stage:Stage IIIA, dead, 1210 days
134.7
TCGA-2Y-A9GU-01A
0 years, female, white, stage:Stage I, alive, 1939 days
132.2
TCGA-DD-AAW1-01A
0 years, male, asian, stage:Stage IIIA, alive, 1989 days
124.6
TCGA-DD-AACI-01A
0 years, male, asian, stage:Stage II, alive, 1618 days
116.6
TCGA-BC-A110-01A
0 years, female, black or african american, stage:'--, dead, 2116 days
115.7
TCGA-DD-A73A-01A
0 years, male, white, stage:Stage I, alive, 728 days
115.3
TCGA-G3-A5SK-01A
0 years, male, white, stage:Stage I, alive, 744 days
112.8
TCGA-ED-A97K-01A
0 years, male, asian, stage:Stage IIIA, alive, 6 days
111.8
TCGA-FV-A495-01A
0 years, female, white, stage:Stage II, alive, 1 days
104.2
TCGA-K7-A5RF-01A
0 years, male, white, stage:Stage I, alive, 631 days
102.2
TCGA-MI-A75E-01A
0 years, male, white, stage:Stage IIIC, alive, 507 days
95.4
TCGA-CC-A9FW-01A
0 years, male, asian, stage:Stage IIIA, alive, 248 days
94.9
TCGA-DD-AACQ-01A
0 years, male, asian, stage:Stage II, dead, 432 days
91.3
TCGA-G3-A7M9-01A
0 years, male, white, stage:Stage IIIB, dead, 56 days
89.5
TCGA-UB-A7MB-01A
0 years, male, white, stage:Stage II, alive, 601 days
80.9
TCGA-DD-AACS-01A
0 years, male, asian, stage:Stage I, alive, 1804 days
79.4
TCGA-UB-A7ME-01A
0 years, male, asian, stage:Stage I, alive, 486 days
78.8
TCGA-DD-A1EA-01A
0 years, male, asian, stage:Stage II, alive, 2415 days
76.1
TCGA-DD-AACV-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
75.4
TCGA-DD-AAVV-01A
0 years, male, asian, stage:Stage II, alive, 2455 days
73.6
TCGA-BC-A10Y-01A
0 years, male, white, stage:'--, dead, 711 days
72.9
TCGA-2Y-A9GX-01A
0 years, male, white, stage:Stage I, alive, 2442 days
72.1
TCGA-K7-A5RG-01A
0 years, male, black or african american, stage:Stage I, alive, 519 days
71.6
TCGA-GJ-A9DB-01A
0 years, male, white, stage:Stage I, dead, 67 days
70.6
TCGA-DD-A114-01A
0 years, male, black or african american, stage:Stage II, dead, 1149 days
69.6
TCGA-G3-AAV3-01A
0 years, female, white, stage:Stage II, alive, 412 days
66.4
TCGA-DD-A4NQ-01A
0 years, male, white, stage:Stage II, dead, 373 days
66.1
TCGA-DD-AAE4-01A
0 years, female, asian, stage:Stage I, alive, 608 days
65.3
TCGA-DD-AAC9-01A
0 years, male, asian, stage:Stage I, alive, 347 days
64.8
TCGA-MI-A75I-01A
0 years, male, black or african american, stage:'--, alive, 630 days
63.9
TCGA-DD-AAEE-01A
0 years, male, asian, stage:Stage I, alive, 810 days
60.4
TCGA-CC-A123-01A
0 years, female, asian, stage:Stage IIIA, alive, 219 days
58.6
TCGA-DD-AACY-01A
0 years, male, asian, stage:Stage I, alive, 1450 days
58.5
TCGA-DD-A4NF-01A
0 years, male, white, stage:Stage I, alive, 942 days
56.5
TCGA-CC-A5UE-01A
0 years, male, asian, stage:Stage IIIB, dead, 272 days
55.7
TCGA-WJ-A86L-01A
0 years, female, white, stage:Stage I, alive, 345 days
54.2
TCGA-DD-AAE9-01A
0 years, male, asian, stage:Stage I, alive, 722 days
52.0
TCGA-ZP-A9D4-01A
0 years, female, white, stage:'--, alive, 395 days
51.9
TCGA-DD-AACG-01A
0 years, male, asian, stage:Stage II, dead, 469 days
49.5
TCGA-DD-A1EE-01A
0 years, male, white, stage:Stage IIIA, dead, 349 days
47.0
TCGA-WX-AA46-01A
0 years, male, white, stage:Stage II, alive, 756 days
45.9
TCGA-ED-A7XP-01A
0 years, female, asian, stage:Stage II, alive, 400 days
45.6
TCGA-BD-A3EP-01A
0 years, female, black or african american, stage:Stage I, alive, 409 days
45.3
TCGA-FV-A3I1-01A
0 years, female, white, stage:Stage II, dead, 247 days
45.2
TCGA-DD-A4ND-01A
0 years, female, white, stage:Stage I, alive, 2746 days
43.2
TCGA-ZP-A9CZ-01A
0 years, male, asian, stage:'--, alive, 706 days
42.2
TCGA-2Y-A9GW-01A
0 years, male, white, stage:Stage I, dead, 1271 days
42.1
TCGA-BD-A2L6-01A
0 years, male, white, stage:'--, alive, 1363 days
41.9
TCGA-4R-AA8I-01A
0 years, male, white, stage:Stage II, dead, 262 days
41.2
TCGA-DD-AADS-01A
0 years, male, asian, stage:Stage I, alive, 474 days
38.6
TCGA-DD-A73F-01A
0 years, female, white, stage:Stage I, alive, 1085 days
37.7
TCGA-YA-A8S7-01A
0 years, male, white, stage:Stage IIIA, dead, 412 days
34.2
TCGA-DD-A73G-01A
0 years, female, white, stage:Stage I, alive, 3478 days
29.8
TCGA-XR-A8TD-01A
0 years, female, white, stage:Stage IIIB, alive, 1030 days
28.4
TCGA-ZS-A9CF-01A
0 years, male, white, stage:Stage II, alive, 2412 days
25.9
TCGA-DD-AADD-01A
0 years, male, asian, stage:Stage I, alive, 1231 days
24.2
TCGA-G3-AAV2-01A
0 years, male, white, stage:Stage I, alive, 372 days
24.0
TCGA-BC-A10S-01A
0 years, male, white, stage:'--, dead, 1423 days
23.7
TCGA-BW-A5NO-01A
0 years, male, black or african american, stage:Stage IIIA, alive, 20 days
22.6
TCGA-CC-A7II-01A
0 years, male, asian, stage:Stage IIIA, alive, 399 days
21.8
TCGA-2Y-A9GT-01A
0 years, male, white, stage:Stage I, dead, 1624 days
21.6
TCGA-2Y-A9H4-01A
0 years, male, black or african american, stage:Stage I, alive, 1452 days
20.5
TCGA-CC-A3MA-01A
0 years, male, asian, stage:Stage IIIA, dead, 303 days
20.3
TCGA-CC-A7IL-01A
0 years, male, asian, stage:Stage IIIA, dead, 278 days
19.9
TCGA-RC-A6M4-01A
0 years, female, white, stage:Stage IIIA, alive, 22 days
18.6
TCGA-DD-A39Y-01A
0 years, male, asian, stage:Stage I, dead, 171 days
18.1
TCGA-2Y-A9H9-01A
0 years, male, white, stage:Stage I, alive, 697 days
17.8
TCGA-ZP-A9D2-01A
0 years, male, white, stage:'--, dead, 765 days
16.6
TCGA-G3-A7M8-01A
0 years, male, asian, stage:Stage I, alive, 430 days
15.9
TCGA-ED-A7XO-01A
0 years, male, asian, stage:Stage IIIA, alive, 427 days
14.8
TCGA-BC-A216-01A
0 years, female, white, stage:Stage IIIA, alive, 1351 days
14.7
TCGA-DD-AADU-01A
0 years, male, asian, stage:Stage II, alive, 554 days
14.7
TCGA-DD-AAE1-01A
0 years, male, asian, stage:Stage I, alive, 552 days
14.0
TCGA-2Y-A9H7-01A
0 years, female, white, stage:Stage I, alive, 1168 days
13.5
TCGA-DD-AAW2-01A
0 years, male, asian, stage:Stage I, alive, 1855 days
13.3
TCGA-CC-A8HU-01A
0 years, female, asian, stage:Stage IIIA, dead, 344 days
12.8
TCGA-MI-A75H-01A
0 years, male, white, stage:'--, alive, 747 days
12.3
TCGA-BC-A8YO-01A
0 years, female, white, stage:Stage IIIC, alive, 562 days
12.2
TCGA-DD-A119-01A
0 years, male, asian, stage:Stage IV, dead, 223 days
12.1
TCGA-RC-A7SF-01A
0 years, male, asian, stage:Stage I, alive, 579 days
11.9
TCGA-DD-AAE7-01A
0 years, male, asian, stage:Stage I, alive, 644 days
11.5
TCGA-DD-A1EB-01A
0 years, female, stage:Stage I, alive, 2017 days
11.0
TCGA-DD-A73D-01A
0 years, female, white, stage:Stage II, alive, 693 days
10.1
TCGA-DD-AACC-01A
0 years, male, asian, stage:Stage I, dead, 1685 days
9.0
TCGA-DD-AADP-01A
0 years, male, asian, stage:Stage I, alive, 458 days
8.1
TCGA-UB-A7MF-01A
0 years, male, white, stage:Stage IIIA, dead, 214 days
7.8
TCGA-2Y-A9H8-01A
0 years, female, white, stage:'--, dead, 633 days
7.1
TCGA-DD-AAD1-01A
0 years, female, asian, stage:Stage I, alive, 564 days
5.6
TCGA-DD-AACW-01A
0 years, male, asian, stage:Stage I, alive, 1424 days
5.4
TCGA-BC-A69I-01A
0 years, male, white, stage:Stage I, alive, 387 days
5.2
TCGA-DD-A115-01A
0 years, male, white, stage:Stage IIIA, dead, 2542 days
5.2
TCGA-MI-A75G-01A
0 years, male, white, stage:Stage II, alive, 698 days
5.2
TCGA-UB-A7MD-01A
0 years, male, black or african american, stage:Stage I, dead, 52 days
5.1
TCGA-G3-AAV6-01A
0 years, female, white, stage:Stage IIIA, dead, 65 days
4.7
TCGA-G3-AAV5-01A
0 years, male, white, stage:Stage II, alive, 354 days
4.5
TCGA-DD-AAEB-01A
0 years, male, asian, stage:Stage I, alive, 478 days
4.1
TCGA-RC-A7SK-01A
0 years, male, asian, stage:Stage I, alive, 472 days
4.0
TCGA-XR-A8TF-01A
0 years, male, white, stage:Stage I, dead, 693 days
3.6
TCGA-NI-A4U2-01A
0 years, male, white, stage:Stage IIIA, dead, 1791 days
3.6
TCGA-5C-A9VG-01A
0 years, male, white, stage:Stage II, alive, 328 days
3.4
TCGA-EP-A2KB-01A
0 years, female, white, stage:Stage I, dead, 596 days
3.4
TCGA-UB-AA0V-01A
0 years, female, white, stage:Stage I, alive, 314 days
3.4
TCGA-CC-5258-01A
0 years, male, asian, stage:Stage II, dead, 129 days
3.2
TCGA-FV-A4ZP-01A
0 years, male, white, stage:Stage IIIA, dead, 2486 days
3.1
TCGA-ES-A2HT-01A
0 years, male, black or african american, stage:Stage I, dead, 438 days
2.9
TCGA-CC-A3MC-01A
0 years, male, asian, stage:Stage IIIA, alive, 363 days
2.9
TCGA-BC-A10Z-01A
0 years, female, white, stage:Stage I, dead, 34 days
2.9
TCGA-DD-AAVQ-01A
0 years, male, asian, stage:Stage I, alive, 2728 days
2.8
TCGA-DD-A4NH-01A
0 years, female, white, stage:Stage IIIB, alive, 917 days
2.6
TCGA-CC-5264-01A
0 years, male, asian, stage:Stage IIIA, dead, 102 days
2.3
TCGA-DD-AADI-01A
0 years, female, asian, stage:Stage I, alive, 1085 days
2.3
TCGA-XR-A8TE-01A
0 years, male, white, stage:Stage IIIA, alive, 925 days
2.2
TCGA-DD-AACH-01A
0 years, male, asian, stage:Stage II, dead, 195 days
2.2
TCGA-DD-AACZ-01A
0 years, female, asian, stage:Stage I, dead, 171 days
1.9
TCGA-5R-AA1C-01A
0 years, male, white, stage:Stage II, alive, 520 days
1.9
TCGA-BC-A3KG-01A
0 years, female, white, stage:Stage II, alive, 680 days
1.6
TCGA-DD-AACL-01A
0 years, female, asian, stage:Stage I, dead, 107 days
1.6
TCGA-CC-A7IE-01A
0 years, male, asian, stage:Stage IIIA, dead, 217 days
1.6
TCGA-RC-A7SH-01A
0 years, male, asian, stage:Stage II, alive, 468 days
1.6
TCGA-DD-AADV-01A
0 years, male, asian, stage:Stage I, alive, 574 days
1.5
TCGA-RC-A7SB-01A
0 years, male, asian, stage:Stage II, alive, 588 days
1.5
TCGA-CC-A7IK-01A
0 years, male, asian, stage:Stage IIIA, dead, 262 days
1.4
TCGA-EP-A2KA-01A
0 years, female, white, stage:Stage IIIA, dead, 627 days
1.3
TCGA-UB-A7MA-01A
0 years, female, white, stage:Stage II, alive, 848 days
1.3
TCGA-ED-A7PX-01A
0 years, female, asian, stage:Stage II, alive, 6 days
1.2
TCGA-DD-AAD3-01A
0 years, male, asian, stage:Stage I, alive, 1295 days
1.2
TCGA-DD-A3A9-01A
0 years, female, white, stage:Stage IVB, dead, 931 days
1.2
TCGA-XR-A8TG-01A
0 years, male, white, stage:Stage I, alive, 898 days
1.2
TCGA-ZS-A9CG-01A
0 years, male, white, stage:Stage II, alive, 341 days
1.2
TCGA-ED-A66X-01A
0 years, male, asian, stage:Stage IIIA, alive, 406 days
1.2
TCGA-ED-A82E-01A
0 years, female, asian, stage:Stage IIIA, alive, 408 days
1.2
TCGA-DD-AACO-01A
0 years, male, asian, stage:Stage I, alive, 1876 days
1.1
TCGA-G3-AAV0-01A
0 years, male, asian, stage:Stage I, alive, 476 days
1.0
TCGA-DD-A3A2-01A
0 years, female, white, stage:Stage I, dead, 2131 days
1.0
TCGA-DD-A4NV-01A
0 years, male, white, stage:Stage IIIA, alive, 2398 days
1.0
TCGA-DD-AAEH-01A
0 years, male, asian, stage:Stage I, alive, 784 days
0.8
TCGA-DD-AACA-01A
0 years, male, asian, stage:Stage I, alive, 2301 days
0.8
TCGA-G3-AAV7-01A
0 years, male, asian, stage:Stage II, alive, 361 days
0.8
TCGA-ZS-A9CE-01A
0 years, female, white, stage:Stage II, alive, 1241 days
0.8
TCGA-PD-A5DF-01A
0 years, female, white, stage:Stage IIIB, dead, 639 days
0.8
TCGA-G3-A25S-01A
0 years, male, white, stage:Stage I, dead, 416 days
0.8
TCGA-CC-A9FS-01A
0 years, male, asian, stage:Stage II, alive, 211 days
0.8
TCGA-ED-A7PY-01A
0 years, female, asian, stage:Stage II, alive, 390 days
0.7
TCGA-G3-A5SJ-01A
0 years, male, white, stage:Stage I, alive, 698 days
0.7
TCGA-FV-A2QR-01A
0 years, male, white, stage:Stage I, dead, 581 days
0.7
TCGA-DD-A4NO-01A
0 years, male, white, stage:Stage I, alive, 2245 days
0.7
TCGA-G3-A3CH-01A
0 years, male, asian, stage:Stage IIIA, alive, 780 days
0.6
TCGA-DD-A73E-01A
0 years, male, white, stage:Stage I, alive, 44 days
0.6
TCGA-DD-A3A7-01A
0 years, male, stage:Stage IIIB, dead, 419 days
0.6
TCGA-2Y-A9HA-01A
0 years, male, white, stage:Stage II, dead, 36 days
0.6
TCGA-MR-A520-01A
0 years, male, white, stage:Stage I, alive, 229 days
0.6
TCGA-EP-A26S-01A
0 years, male, white, stage:Stage I, alive, 608 days
0.6
TCGA-RC-A6M6-01A
0 years, male, white, stage:Stage II, alive, 9 days
0.6
TCGA-DD-A4NG-01A
0 years, male, white, stage:Stage IIIA, dead, 802 days
0.5
TCGA-CC-A8HS-01A
0 years, male, asian, stage:Stage IIIC, dead, 300 days
0.5
TCGA-KR-A7K2-01A
0 years, male, white, stage:Stage I, alive, 829 days
0.5
TCGA-DD-AACE-01A
0 years, male, asian, stage:Stage I, alive, 2184 days
0.5
TCGA-DD-AACD-01A
0 years, male, asian, stage:Stage I, dead, 381 days
0.5
TCGA-G3-A7M6-01A
0 years, female, white, stage:Stage I, alive, 632 days
0.5
TCGA-DD-AADN-01A
0 years, male, asian, stage:Stage I, alive, 898 days
0.4
TCGA-ZP-A9D0-01A
0 years, female, black or african american, stage:'--, alive, 1091 days
0.4
TCGA-G3-A3CJ-01A
0 years, male, american indian or alaska native, stage:Stage II, alive, 594 days
0.4
TCGA-2Y-A9GY-01A
0 years, female, white, stage:Stage II, dead, 757 days
0.4
TCGA-G3-A6UC-01A
0 years, male, white, stage:Stage IIIB, alive, 671 days
0.4
TCGA-CC-A7IF-01A
0 years, male, asian, stage:Stage IIIA, dead, 649 days
0.4
TCGA-DD-A3A3-01A
0 years, male, asian, stage:Stage I, dead, 535 days
0.4
TCGA-DD-AAW0-01A
0 years, male, asian, stage:Stage I, alive, 2015 days
0.4
TCGA-LG-A9QC-01A
0 years, male, white, stage:Stage I, alive, 425 days
0.3
TCGA-EP-A3JL-01A
0 years, male, white, stage:Stage I, alive, 303 days
0.3
TCGA-CC-A3M9-01A
0 years, male, asian, stage:Stage IIIA, dead, 300 days
0.3
TCGA-DD-AACT-01A
0 years, female, asian, stage:Stage I, alive, 1562 days
0.3
TCGA-GJ-A3OU-01A
0 years, male, white, stage:Stage I, alive, 879 days
0.3
TCGA-CC-A5UC-01A
0 years, male, asian, stage:Stage IIIA, dead, 347 days
0.3
TCGA-G3-AAV4-01A
0 years, female, white, stage:Stage I, dead, 27 days
0.2
TCGA-DD-AAVP-01A
0 years, male, asian, stage:Stage I, alive, 2752 days
0.2
TCGA-BC-A5W4-01A
0 years, male, white, stage:Stage IIIA, dead, 547 days
0.2
TCGA-CC-5263-01A
0 years, male, asian, stage:Stage IIIA, dead, 129 days
0.2
TCGA-ED-A8O6-01A
0 years, female, asian, stage:Stage IIIA, dead, 56 days
0.2
TCGA-5R-AAAM-01A
0 years, female, white, stage:Stage II, dead, 46 days
0.2
TCGA-DD-AACB-01A
0 years, female, asian, stage:Stage I, alive, 2324 days
0.2
TCGA-DD-AACP-01A
0 years, male, asian, stage:Stage I, alive, 415 days
0.2
TCGA-BC-A217-01A
0 years, female, white, stage:Stage II, dead, 1397 days
0.2
TCGA-ED-A459-01A
0 years, male, asian, stage:Stage II, alive, 910 days
0.2
TCGA-2Y-A9H0-01A
0 years, male, white, stage:Stage IIIA, alive, 3675 days
0.2
TCGA-DD-A39V-01A
0 years, male, white, stage:Stage II, dead, 643 days
0.2
TCGA-KR-A7K7-01A
0 years, female, white, stage:Stage II, alive, 951 days
0.2
TCGA-DD-A113-01A
0 years, female, white, stage:Stage II, alive, 2425 days
0.2
TCGA-2Y-A9HB-01A
0 years, male, stage:Stage I, alive, 260 days
0.2
TCGA-CC-A7IG-01A
0 years, male, asian, stage:Stage II, dead, 299 days
0.2
TCGA-RC-A7S9-01A
0 years, female, asian, stage:Stage I, alive, 640 days
0.2
TCGA-NI-A8LF-01A
0 years, male, white, stage:Stage I, alive, 799 days
0.2
TCGA-DD-AADQ-01A
0 years, male, asian, stage:Stage II, alive, 436 days
0.2
TCGA-DD-A39W-01A
0 years, female, white, stage:Stage III, dead, 827 days
0.2
TCGA-DD-A1EG-01A
0 years, male, white, stage:Stage I, dead, 1372 days
0.1
TCGA-DD-A39X-01A
0 years, female, white, stage:Stage I, dead, 1694 days
0.1
TCGA-DD-AAD0-01A
0 years, female, asian, stage:Stage I, alive, 137 days
0.1
TCGA-FV-A4ZQ-01A
0 years, male, white, stage:Stage I, alive, 12 days
0.1
TCGA-DD-AACJ-01A
0 years, male, asian, stage:Stage II, alive, 2102 days
0.1
TCGA-DD-AADR-01A
0 years, male, asian, stage:Stage I, alive, 2028 days
0.1
TCGA-DD-A3A6-01A
0 years, female, white, stage:Stage II, dead, 3258 days
0.0
TCGA-DD-A11C-01A
0 years, male, white, stage:Stage I, alive, 662 days
0.0
TCGA-HP-A5N0-01A
0 years, female, stage:'--, dead, 752 days
0.0
TCGA-DD-AAED-01A
0 years, male, asian, stage:Stage I, alive, 763 days
0.0
TCGA-DD-A4NI-01A
0 years, male, white, stage:Stage II, alive, 816 days
0.0
TCGA-BC-A10T-01A
0 years, male, white, stage:'--, dead, 837 days
0.0
TCGA-G3-A5SI-01A
0 years, male, asian, stage:Stage II, dead, 768 days
0.0
TCGA-WX-AA44-01A
0 years, female, white, stage:Stage I, alive, 615 days
0.0
TCGA-G3-A5SL-01A
0 years, male, white, stage:Stage II, alive, 621 days
0.0
TCGA-G3-AAV1-01A
0 years, male, asian, stage:Stage IIIC, dead, 359 days
0.0
TCGA-DD-AAE2-01A
0 years, male, asian, stage:Stage I, alive, 638 days
0.0
TCGA-DD-A4NS-01A
0 years, female, white, stage:Stage I, dead, 2456 days
0.0
TCGA-DD-AAEG-01A
0 years, female, asian, stage:Stage I, alive, 719 days
0.0
TCGA-DD-A11B-01A
0 years, male, white, stage:Stage I, dead, 14 days
0.0
TCGA-DD-AADM-01A
0 years, male, asian, stage:Stage II, dead, 12 days
0.0
TCGA-DD-A3A8-01A
0 years, male, white, stage:Stage II, dead, 11 days
0.0
TCGA-DD-A73C-01A
0 years, female, white, stage:Stage IIIA, alive, 701 days
0.0
TCGA-DD-A3A5-01A
0 years, female, white, stage:Stage III, dead, 3125 days
0.0
TCGA-DD-AAD6-01A
0 years, male, asian, stage:Stage IIIA, alive, 672 days
0.0
TCGA-DD-A118-01A
0 years, female, white, stage:Stage II, alive, 3437 days
0.0
TCGA-DD-A4NR-01A
0 years, female, white, stage:Stage I, dead, 9 days
0.0
TCGA-T1-A6J8-01A
0 years, male, white, stage:'--, alive, 23 days
0.0
TCGA-KR-A7K8-01A
0 years, male, stage:Stage I, alive, 906 days
0.0
TCGA-QA-A7B7-01A
0 years, male, black or african american, stage:Stage II, alive, 94 days
0.0
TCGA-DD-A1EL-01A
0 years, male, black or african american, stage:Stage II, dead, 415 days
0.0
TCGA-CC-A7IH-01A
0 years, male, asian, stage:Stage IIIA, alive, 365 days
0.0
TCGA-DD-AACN-01A
0 years, male, asian, stage:Stage I, alive, 1302 days
0.0
TCGA-CC-A7IJ-01A
0 years, male, asian, stage:Stage II, alive, 382 days
0.0
TCGA-2Y-A9H3-01A
0 years, male, white, stage:Stage II, alive, 1516 days
0.0
TCGA-DD-AADA-01A
0 years, female, asian, stage:Stage I, alive, 1233 days
0.0
TCGA-DD-AAEI-01A
0 years, male, asian, stage:Stage I, alive, 1531 days
0.0
TCGA-DD-A1EF-01A
0 years, female, white, stage:Stage I, dead, 394 days
0.0
TCGA-3K-AAZ8-01A
0 years, male, black or african american, stage:Stage IIIB, alive, 396 days
0.0
TCGA-DD-A73B-01A
0 years, female, white, stage:Stage I, dead, 283 days
0.0
TCGA-DD-AAD8-01A
0 years, female, asian, stage:Stage I, alive, 1219 days
0.0
TCGA-CC-5259-01A
0 years, female, asian, stage:Stage IIIC, alive, 250 days
0.0
TCGA-DD-AAW3-01A
0 years, male, asian, stage:Stage I, alive, 1633 days
0.0
TCGA-RG-A7D4-01A
0 years, male, black or african american, stage:Stage II, alive, 1098 days
0.0
TCGA-DD-AAEA-01A
0 years, male, asian, stage:Stage I, alive, 575 days
0.0
TCGA-ZP-A9CV-01A
0 years, male, white, stage:'--, dead, 1088 days
0.0
TCGA-DD-AAVX-01A
0 years, male, asian, stage:Stage II, alive, 1718 days
0.0
TCGA-FV-A3R2-01A
0 years, male, white, stage:Stage I, dead, 194 days
0.0
TCGA-G3-A7M5-01A
0 years, male, asian, stage:Stage I, alive, 447 days
0.0
TCGA-BC-A112-01A
0 years, male, white, stage:'--, dead, 153 days
0.0
TCGA-DD-AAE6-01A
0 years, female, asian, stage:Stage I, alive, 141 days
0.0
TCGA-UB-A7MC-01A
0 years, male, white, stage:Stage IIIA, alive, 500 days
0.0
TCGA-DD-A4NJ-01A
0 years, female, white, stage:Stage II, alive, 928 days
0.0
TCGA-DD-AADF-01A
0 years, female, asian, stage:Stage I, dead, 115 days
0.0
TCGA-DD-AAVY-01A
0 years, male, asian, stage:Stage IIIA, alive, 1970 days
0.0
TCGA-2Y-A9H6-01A
0 years, female, white, stage:Stage I, alive, 357 days
0.0
TCGA-EP-A12J-01A
0 years, male, black or african american, stage:Stage I, alive, 570 days
0.0
TCGA-ES-A2HS-01A
0 years, male, white, stage:Stage I, dead, 688 days
The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
DEFB1 is potential prognostic, high expression is favorable in Liver Hepatocellular Carcinoma (validation)
Stage:
Survival analysis
Current cut offi
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average TPM
241.7
Number of samples
231
Samples
Sample
Description
TPM
DO45285
0 years, male, NA, stage:3, alive, 480 days
3349.2
DO45305
0 years, male, NA, stage:4, alive, 300 days
2740.5
DO45283
0 years, male, NA, stage:3, alive, 510 days
2185.2
DO23515
0 years, male, NA, stage:2, alive, 1230 days
1772.8
DO45121
0 years, male, NA, stage:3, alive, 1530 days
1743.7
DO45137
0 years, male, NA, stage:1, alive, 1320 days
1530.2
DO45259
0 years, male, NA, stage:3, alive, 330 days
1455.0
DO45289
0 years, female, NA, stage:3, alive, 360 days
1423.8
DO45303
0 years, female, NA, stage:3, alive, 990 days
1378.7
DO50813
0 years, male, NA, stage:2, alive, 420 days
1180.0
DO45249
0 years, male, NA, stage:1, alive, 630 days
1168.4
DO45096
0 years, male, NA, stage:2, dead, 1290 days
1100.8
DO48737
0 years, male, NA, stage:1, alive, 720 days
1052.7
DO23524
0 years, female, NA, stage:2, alive, 1050 days
958.4
DO50802
0 years, male, NA, stage:2, alive, 930 days
842.4
DO50855
0 years, male, NA, stage:2, alive, 570 days
824.0
DO45159
0 years, male, NA, stage:3, alive, 1470 days
813.7
DO48736
0 years, female, NA, stage:1, alive, 600 days
806.0
DO45189
0 years, female, NA, stage:2, alive, 1200 days
759.8
DO48761
0 years, male, NA, stage:2, alive, 870 days
706.4
DO45251
0 years, female, NA, stage:2, alive, 900 days
694.0
DO48732
0 years, male, NA, stage:3, alive, 630 days
692.7
DO45211
0 years, male, NA, stage:3, alive, 240 days
673.4
DO45129
0 years, male, NA, stage:3, alive, 1470 days
630.5
DO45207
0 years, male, NA, stage:1, alive, 1050 days
595.6
DO50825
0 years, male, NA, stage:2, alive, 390 days
571.0
DO50776
0 years, male, NA, stage:1, alive, 690 days
561.6
DO23538
0 years, male, NA, stage:2, alive, 450 days
517.9
DO50805
0 years, male, NA, stage:2, alive, 690 days
516.0
DO45243
0 years, female, NA, stage:3, alive, 930 days
510.3
DO50819
0 years, female, NA, stage:2, alive, 510 days
504.1
DO23526
0 years, male, NA, stage:3, alive, 1050 days
497.6
DO23548
0 years, female, NA, stage:1, alive, 840 days
485.6
DO45092
0 years, male, NA, stage:4, dead, 1200 days
478.5
DO45227
0 years, female, NA, stage:2, alive, 1020 days
462.9
DO45205
0 years, female, NA, stage:2, dead, 90 days
456.5
DO23528
0 years, female, NA, stage:2, alive, 1020 days
439.3
DO50774
0 years, female, NA, stage:2, alive, 720 days
398.9
DO45177
0 years, female, NA, stage:3, alive, 1260 days
395.1
DO45281
0 years, male, NA, stage:4, alive, 750 days
392.0
DO23533
0 years, male, NA, stage:2, alive, 900 days
378.2
DO48682
0 years, female, NA, stage:3, dead, 120 days
377.3
DO23542
0 years, male, NA, stage:3, alive, 960 days
360.2
DO48719
0 years, male, NA, stage:2, alive, 690 days
359.2
DO48741
0 years, male, NA, stage:3, alive, 240 days
348.6
DO45201
0 years, male, NA, stage:1, alive, 900 days
330.7
DO45233
0 years, male, NA, stage:3, alive, 900 days
306.1
DO45279
0 years, male, NA, stage:3, alive, 1290 days
300.4
DO45125
0 years, male, NA, stage:3, alive, 1680 days
298.7
DO45095
0 years, male, NA, stage:2, alive, 1620 days
286.1
DO48716
0 years, male, NA, stage:2, alive, 720 days
280.2
DO48733
0 years, male, NA, stage:2, alive, 600 days
278.6
DO45187
0 years, female, NA, stage:1, alive, 1260 days
277.5
DO45213
0 years, male, NA, stage:1, alive, 1200 days
265.7
DO23537
0 years, male, NA, stage:2, dead, 900 days
262.3
DO23536
0 years, male, NA, stage:2, alive, 930 days
244.6
DO50808
0 years, male, NA, stage:2, alive, 570 days
243.2
DO48701
0 years, male, NA, stage:2, alive, 780 days
242.5
DO23532
0 years, female, NA, stage:1, alive, 960 days
236.4
DO45253
0 years, male, NA, stage:2, alive, 870 days
228.7
DO45143
0 years, male, NA, stage:3, alive, 1290 days
226.8
DO45157
0 years, male, NA, stage:2, alive, 1980 days
224.8
DO45247
0 years, female, NA, stage:2, alive, 210 days
221.2
DO45167
0 years, male, NA, stage:2, dead, 1440 days
219.2
DO45139
0 years, male, NA, stage:3, alive, 1320 days
219.1
DO48674
0 years, male, NA, stage:2, alive, 1260 days
216.6
DO45153
0 years, female, NA, stage:2, alive, 1380 days
215.1
DO23508
0 years, female, NA, stage:2, alive, 390 days
215.1
DO48727
0 years, female, NA, stage:2, dead, 390 days
212.8
DO48742
0 years, male, NA, stage:2, alive, 600 days
210.7
DO45263
0 years, male, NA, stage:3, dead, 270 days
205.6
DO45105
0 years, male, NA, stage:1, alive, 1680 days
203.7
DO45094
0 years, male, NA, stage:3, alive, 1650 days
191.5
DO45221
0 years, female, NA, stage:4, dead, 390 days
191.2
DO48760
0 years, female, NA, stage:2, alive, 690 days
185.6
DO45181
0 years, female, NA, stage:2, alive, 1200 days
176.5
DO45231
0 years, male, NA, stage:2, alive, 930 days
176.4
DO48693
0 years, male, NA, stage:2, alive, 900 days
176.3
DO45115
0 years, male, NA, stage:2, alive, 840 days
175.1
DO23510
0 years, female, NA, stage:2, alive, 870 days
174.4
DO45149
0 years, female, NA, stage:2, alive, 1260 days
169.4
DO23516
0 years, male, NA, stage:3, dead, 20 days
169.4
DO45199
0 years, female, NA, stage:2, alive, 1350 days
168.2
DO48704
0 years, female, NA, stage:3, alive, 750 days
165.1
DO45141
0 years, male, NA, stage:2, alive, 1320 days
164.4
DO23544
0 years, male, NA, stage:2, alive, 960 days
160.8
DO45307
0 years, female, NA, stage:4, dead, 240 days
159.5
DO45109
0 years, male, NA, stage:2, alive, 1590 days
159.3
DO50829
0 years, male, NA, stage:3, alive, 570 days
153.3
DO45241
0 years, male, NA, stage:1, alive, 1080 days
153.1
DO48697
0 years, female, NA, stage:2, dead, 810 days
151.6
DO45191
0 years, female, NA, stage:2, alive, 1200 days
148.1
DO45097
0 years, male, NA, stage:3, alive, 1620 days
148.1
DO45261
0 years, male, NA, stage:3, alive, 990 days
147.1
DO45135
0 years, male, NA, stage:1, alive, 1410 days
146.3
DO45195
0 years, male, NA, stage:1, alive, 390 days
144.1
DO45223
0 years, male, NA, stage:4, alive, 1020 days
143.6
DO48743
0 years, female, NA, stage:2, alive, 570 days
136.3
DO48712
0 years, male, NA, stage:2, alive, 810 days
132.5
DO23527
0 years, male, NA, stage:1, alive, 1050 days
132.0
DO227801
0 years, female, NA, stage:1, alive, 660 days
129.9
DO50850
0 years, male, NA, stage:3, alive, 720 days
122.4
DO45103
0 years, male, NA, stage:3, alive, 450 days
121.7
DO50811
0 years, male, NA, stage:1, alive, 450 days
121.6
DO45257
0 years, male, NA, stage:3, alive, 810 days
119.5
DO50783
0 years, male, NA, stage:3, alive, 480 days
117.9
DO45229
0 years, male, NA, stage:1, alive, 990 days
116.5
DO23518
0 years, male, NA, stage:2, alive, 1320 days
112.4
DO50787
0 years, male, NA, stage:3, alive, 480 days
111.2
DO45113
0 years, male, NA, stage:3, alive, 1560 days
110.7
DO23546
0 years, male, NA, stage:2, alive, 1050 days
110.5
DO23530
0 years, male, NA, stage:4, dead, 180 days
100.9
DO45203
0 years, female, NA, stage:2, alive, 1170 days
99.5
DO45101
0 years, male, NA, stage:2, alive, 1680 days
95.3
DO45273
0 years, male, NA, stage:2, alive, 480 days
93.3
DO23531
0 years, female, NA, stage:3, alive, 900 days
90.3
DO45185
0 years, male, NA, stage:2, alive, 600 days
90.2
DO48700
0 years, female, NA, stage:2, alive, 810 days
88.5
DO45165
0 years, male, NA, stage:2, alive, 690 days
88.1
DO48717
0 years, male, NA, stage:4, dead, 180 days
85.3
DO45173
0 years, male, NA, stage:3, alive, 1170 days
84.8
DO45219
0 years, male, NA, stage:2, alive, 1080 days
81.9
DO45217
0 years, female, NA, stage:3, dead, 270 days
80.1
DO45171
0 years, male, NA, stage:3, alive, 600 days
72.2
DO50818
0 years, male, NA, stage:2, alive, 510 days
71.8
DO23545
0 years, male, NA, stage:2, dead, 570 days
71.8
DO45255
0 years, male, NA, stage:3, alive, 720 days
68.9
DO227643
0 years, male, NA, stage:2, alive, 1260 days
68.6
DO45297
0 years, female, NA, stage:4, dead, 1260 days
66.8
DO45107
0 years, female, NA, stage:2, alive, 1710 days
66.1
DO45145
0 years, male, NA, stage:3, dead, 60 days
65.9
DO23535
0 years, male, NA, stage:1, alive, 960 days
64.1
DO50859
0 years, male, NA, stage:2, alive, 180 days
61.7
DO23519
0 years, male, NA, stage:3, alive, 630 days
61.0
DO23511
0 years, female, NA, stage:3, dead, 180 days
58.0
DO23513
0 years, male, NA, stage:3, alive, 1200 days
56.7
DO50800
0 years, male, NA, stage:2, alive, 510 days
56.0
DO23539
0 years, male, NA, stage:1, alive, 1110 days
55.8
DO48679
0 years, male, NA, stage:2, alive, 1200 days
50.6
DO50806
0 years, male, NA, stage:4, alive, 540 days
50.5
DO45175
0 years, male, NA, stage:2, alive, 1140 days
49.6
DO45093
0 years, male, NA, stage:2, dead, 720 days
48.5
DO50820
0 years, female, NA, stage:3, alive, 510 days
46.9
DO45245
0 years, female, NA, stage:2, dead, 240 days
46.7
DO45239
0 years, male, NA, stage:2, alive, 870 days
45.9
DO50809
0 years, male, NA, stage:3, dead, 720 days
42.8
DO50791
0 years, female, NA, stage:1, dead, 480 days
41.6
DO23534
0 years, male, NA, stage:2, alive, 840 days
38.0
DO23541
0 years, male, NA, stage:2, alive, 930 days
34.6
DO50807
0 years, male, NA, stage:1, alive, 540 days
34.3
DO48757
0 years, female, NA, stage:3, alive, 480 days
33.4
DO23551
0 years, male, NA, stage:3, dead, 150 days
32.4
DO48725
0 years, male, NA, stage:1, alive, 780 days
30.6
DO50789
0 years, female, NA, stage:2, alive, 570 days
30.4
DO45091
0 years, male, NA, stage:2, dead, 1320 days
29.8
DO48723
0 years, male, NA, stage:1, alive, 600 days
27.9
DO48720
0 years, female, NA, stage:2, alive, 570 days
27.2
DO45161
0 years, male, NA, stage:2, dead, 540 days
26.8
DO45119
0 years, male, NA, stage:3, dead, 510 days
26.1
DO45277
0 years, male, NA, stage:3, alive, 600 days
25.1
DO45275
0 years, male, NA, stage:3, dead, 10 days
24.9
DO45183
0 years, female, NA, stage:2, dead, 570 days
24.4
DO48728
0 years, female, NA, stage:2, alive, 150 days
23.6
DO45155
0 years, male, NA, stage:2, alive, 2160 days
23.4
DO45235
0 years, female, NA, stage:1, alive, 900 days
23.2
DO48721
0 years, female, NA, stage:1, alive, 900 days
22.0
DO50778
0 years, male, NA, stage:4, alive, 630 days
21.9
DO23517
0 years, male, NA, stage:2, alive, 1200 days
21.9
DO23547
0 years, male, NA, stage:1, alive, 1020 days
21.2
DO23512
0 years, male, NA, stage:1, alive, 1260 days
17.3
DO45225
0 years, male, NA, stage:1, alive, 1050 days
15.2
DO23552
0 years, female, NA, stage:1, alive, 810 days
13.3
DO50798
0 years, male, NA, stage:3, dead, 30 days
13.3
DO45267
0 years, male, NA, stage:3, dead, 570 days
13.1
DO50840
0 years, male, NA, stage:2, alive, 330 days
12.9
DO45123
0 years, female, NA, stage:2, dead, 570 days
12.2
DO45215
0 years, male, NA, stage:2, alive, 1170 days
12.1
DO45301
0 years, male, NA, stage:2, dead, 1440 days
11.2
DO48747
0 years, male, NA, stage:3, alive, 540 days
9.1
DO45193
0 years, female, NA, stage:4, dead, 120 days
8.4
DO50839
0 years, female, NA, stage:3, alive, 330 days
8.3
DO50845
0 years, male, NA, stage:3, alive, 210 days
7.5
DO48730
0 years, female, NA, stage:2, alive, 630 days
7.1
DO50803
0 years, female, NA, stage:1, alive, 540 days
5.7
DO45197
0 years, male, NA, stage:2, alive, 1170 days
4.6
DO45287
0 years, male, NA, stage:1, alive, 390 days
4.4
DO23509
0 years, male, NA, stage:3, dead, 780 days
4.3
DO50814
0 years, male, NA, stage:3, alive, 420 days
4.1
DO45209
0 years, male, NA, stage:4, alive, 1350 days
4.1
DO48746
0 years, male, NA, stage:3, alive, 570 days
3.4
DO48715
0 years, female, NA, stage:2, dead, 690 days
3.3
DO45099
0 years, male, NA, stage:3, alive, 1590 days
3.0
DO48672
0 years, male, NA, stage:2, alive, 450 days
2.6
DO45299
0 years, female, NA, stage:1, alive, 1440 days
2.3
DO23540
0 years, male, NA, stage:1, alive, 750 days
2.2
DO50857
0 years, male, NA, stage:2, alive, 210 days
2.1
DO45131
0 years, male, NA, stage:4, dead, 360 days
2.0
DO45127
0 years, male, NA, stage:3, dead, 420 days
2.0
DO23550
0 years, male, NA, stage:1, alive, 990 days
1.5
DO50822
0 years, male, NA, stage:2, alive, 510 days
1.5
DO45111
0 years, male, NA, stage:2, alive, 1590 days
1.2
DO50799
0 years, female, NA, stage:2, alive, 540 days
1.1
DO45133
0 years, male, NA, stage:3, dead, 660 days
1.0
DO50804
0 years, male, NA, stage:2, alive, 720 days
0.9
DO50815
0 years, male, NA, stage:3, alive, 150 days
0.9
DO45169
0 years, male, NA, stage:3, alive, 1350 days
0.7
DO45237
0 years, male, NA, stage:2, alive, 900 days
0.7
DO23549
0 years, male, NA, stage:3, alive, 990 days
0.6
DO23523
0 years, male, NA, stage:3, alive, 1080 days
0.5
DO48681
0 years, male, NA, stage:2, alive, 900 days
0.5
DO23525
0 years, male, NA, stage:4, alive, 1050 days
0.5
DO48759
0 years, male, NA, stage:3, alive, 720 days
0.5
DO45269
0 years, male, NA, stage:3, alive, 750 days
0.4
DO50817
0 years, male, NA, stage:2, alive, 390 days
0.4
DO23514
0 years, male, NA, stage:2, alive, 1290 days
0.4
DO48695
0 years, male, NA, stage:2, alive, 720 days
0.4
DO45179
0 years, female, NA, stage:2, alive, 600 days
0.3
DO23521
0 years, male, NA, stage:3, alive, 1110 days
0.3
DO50816
0 years, male, NA, stage:2, alive, 390 days
0.3
DO50844
0 years, male, NA, stage:4, alive, 300 days
0.3
DO50793
0 years, male, NA, stage:4, alive, 540 days
0.2
DO50785
0 years, male, NA, stage:4, dead, 90 days
0.1
DO45163
0 years, male, NA, stage:2, alive, 960 days
0.1
DO48677
0 years, male, NA, stage:3, alive, 1140 days
0.1
DO23529
0 years, male, NA, stage:4, alive, 930 days
0.1
DO23543
0 years, male, NA, stage:2, alive, 1020 days
0.1
DO50832
0 years, male, NA, stage:3, alive, 90 days
0.1
DO48706
0 years, male, NA, stage:2, alive, 870 days
0.1
DO45265
0 years, male, NA, stage:3, alive, 1020 days
0.1
DO45117
0 years, female, NA, stage:2, dead, 1110 days
0.0
DO48751
0 years, male, NA, stage:2, dead, 480 days
0.0
Show allShow less
LIVER HEPATOCELLULAR CARCINOMA - Protein relative expression (CPTAC)
Number of samples
330
Samples
Sample ID
Sample type
nRPX
533
Tumor
3.0
685
Tumor
2.9
131
Tumor
2.7
975
Tumor
2.2
777
Tumor
2.0
461
Tumor
2.0
743
Tumor
1.9
557
Tumor
1.9
451
Tumor
1.8
755
Tumor
1.6
737
Tumor
1.6
393
Tumor
1.5
921
Tumor
1.4
745
Tumor
1.4
863
Tumor
1.3
881
Tumor
1.3
1027
Tumor
1.2
147
Tumor
1.2
525
Tumor
1.2
567
Tumor
1.2
477
Tumor
1.2
471
Tumor
1.2
515
Tumor
1.1
271
Tumor
1.1
513
Tumor
1.0
857
Tumor
1.0
823
Tumor
0.9
395
Tumor
0.9
445
Tumor
0.9
257
Tumor
0.8
195
Tumor
0.8
523
Tumor
0.8
914
Normal
0.7
627
Tumor
0.7
1021
Tumor
0.6
957
Tumor
0.6
952
Normal
0.5
196
Normal
0.5
1044
Normal
0.5
222
Normal
0.5
615
Tumor
0.4
635
Tumor
0.4
816
Normal
0.4
664
Normal
0.4
925
Tumor
0.4
746
Normal
0.4
648
Normal
0.3
738
Normal
0.3
956
Normal
0.3
813
Tumor
0.3
1046
Normal
0.3
666
Normal
0.3
913
Tumor
0.3
466
Normal
0.3
817
Tumor
0.3
744
Normal
0.2
137
Tumor
0.2
943
Tumor
0.2
433
Tumor
0.2
191
Tumor
0.2
268
Normal
0.2
1022
Normal
0.2
213
Tumor
0.2
911
Tumor
0.2
662
Normal
0.2
953
Tumor
0.1
311
Tumor
0.1
1026
Normal
0.1
814
Normal
0.1
818
Normal
0.1
861
Tumor
0.1
528
Normal
0.1
1025
Tumor
0.1
671
Tumor
0.1
527
Tumor
0.1
545
Tumor
0.1
455
Tumor
0.1
852
Normal
0.0
518
Normal
0.0
447
Tumor
0.0
214
Normal
0.0
874
Normal
0.0
728
Normal
0.0
218
Normal
0.0
877
Tumor
0.0
864
Normal
0.0
474
Normal
0.0
663
Tumor
0.0
878
Normal
0.0
277
Tumor
0.0
1028
Normal
0.0
1042
Normal
-0.1
278
Normal
-0.1
672
Normal
-0.1
362
Normal
-0.1
862
Normal
-0.1
618
Normal
-0.1
452
Normal
-0.1
361
Tumor
-0.1
883
Tumor
-0.1
564
Normal
-0.1
232
Normal
-0.2
516
Normal
-0.2
538
Normal
-0.2
258
Normal
-0.2
647
Tumor
-0.2
262
Normal
-0.2
742
Normal
-0.2
272
Normal
-0.2
778
Normal
-0.2
446
Normal
-0.2
297
Tumor
-0.2
192
Normal
-0.2
918
Normal
-0.2
231
Tumor
-0.2
955
Tumor
-0.2
392
Normal
-0.2
642
Normal
-0.3
1032
Normal
-0.3
628
Normal
-0.3
917
Tumor
-0.3
858
Normal
-0.3
916
Normal
-0.3
571
Tumor
-0.3
436
Normal
-0.3
298
Normal
-0.3
546
Normal
-0.3
553
Tumor
-0.3
464
Normal
-0.3
188
Normal
-0.3
824
Normal
-0.3
375
Tumor
-0.3
217
Tumor
-0.3
868
Normal
-0.3
314
Normal
-0.4
456
Normal
-0.4
376
Normal
-0.4
616
Normal
-0.4
172
Normal
-0.4
882
Normal
-0.4
665
Tumor
-0.4
636
Normal
-0.4
574
Normal
-0.4
554
Normal
-0.4
866
Normal
-0.4
968
Normal
-0.4
514
Normal
-0.4
526
Normal
-0.4
1043
Tumor
-0.5
713
Tumor
-0.5
756
Normal
-0.5
723
Tumor
-0.5
924
Normal
-0.5
221
Tumor
-0.5
786
Normal
-0.5
434
Normal
-0.5
162
Normal
-0.5
572
Normal
-0.5
396
Normal
-0.5
661
Tumor
-0.5
385
Tumor
-0.6
312
Normal
-0.6
785
Tumor
-0.6
432
Normal
-0.6
697
Tumor
-0.6
568
Normal
-0.6
524
Normal
-0.6
573
Tumor
-0.6
468
Normal
-0.6
714
Normal
-0.6
698
Normal
-0.6
386
Normal
-0.6
558
Normal
-0.6
444
Normal
-0.6
966
Normal
-0.6
727
Tumor
-0.6
465
Tumor
-0.7
136
Normal
-0.7
1045
Tumor
-0.7
563
Tumor
-0.7
186
Normal
-0.7
938
Normal
-0.7
187
Tumor
-0.7
517
Tumor
-0.7
462
Normal
-0.7
142
Normal
-0.7
394
Normal
-0.7
448
Normal
-0.8
922
Normal
-0.8
366
Normal
-0.8
537
Tumor
-0.8
722
Normal
-0.8
944
Normal
-0.8
331
Tumor
-0.8
1031
Tumor
-0.8
313
Tumor
-0.8
148
Normal
-0.8
435
Tumor
-0.8
912
Normal
-0.8
715
Tumor
-0.9
388
Normal
-0.9
267
Tumor
-0.9
696
Normal
-0.9
721
Tumor
-0.9
332
Normal
-0.9
686
Normal
-0.9
641
Tumor
-0.9
534
Normal
-0.9
473
Tumor
-0.9
963
Tumor
-0.9
884
Normal
-0.9
617
Tumor
-1.0
146
Normal
-1.0
138
Normal
-1.0
964
Normal
-1.0
815
Tumor
-1.0
261
Tumor
-1.0
185
Tumor
-1.0
716
Normal
-1.0
431
Tumor
-1.0
873
Tumor
-1.0
472
Normal
-1.0
923
Tumor
-1.1
132
Normal
-1.1
368
Normal
-1.1
365
Tumor
-1.1
851
Tumor
-1.2
141
Tumor
-1.2
443
Tumor
-1.2
482
Normal
-1.2
867
Tumor
-1.3
384
Normal
-1.3
954
Normal
-1.3
1041
Tumor
-1.3
865
Tumor
-1.4
478
Normal
-1.4
967
Tumor
-1.4
926
Normal
-1.4
741
Tumor
-1.4
383
Tumor
-1.5
536
Normal
-1.5
145
Tumor
-1.5
391
Tumor
-1.6
958
Normal
-1.6
171
Tumor
-1.6
695
Tumor
-1.7
467
Tumor
-1.7
463
Tumor
-1.8
161
Tumor
-1.8
724
Normal
-1.9
915
Tumor
-2.0
937
Tumor
-2.1
387
Tumor
-2.2
951
Tumor
-2.2
367
Tumor
-2.3
535
Tumor
-2.3
965
Tumor
-2.7
481
Tumor
-2.7
135
Tumor
-3.3
351
Tumor
N/A
352
Normal
N/A
111
Normal
N/A
353
Tumor
N/A
112
Tumor
N/A
354
Normal
N/A
113
Tumor
N/A
355
Tumor
N/A
114
Normal
N/A
356
Normal
N/A
357
Tumor
N/A
358
Normal
N/A
483
Tumor
N/A
363
Tumor
N/A
484
Normal
N/A
364
Normal
N/A
123
Tumor
N/A
124
Normal
N/A
487
Tumor
N/A
125
Tumor
N/A
488
Normal
N/A
126
Normal
N/A
127
Tumor
N/A
128
Normal
N/A
491
Tumor
N/A
492
Normal
N/A
493
Tumor
N/A
494
Normal
N/A
497
Tumor
N/A
498
Normal
N/A
1016
Normal
N/A
1015
Tumor
N/A
1014
Normal
N/A
1013
Tumor
N/A
283
Tumor
N/A
284
Normal
N/A
285
Tumor
N/A
286
Normal
N/A
976
Normal
N/A
977
Tumor
N/A
978
Normal
N/A
981
Tumor
N/A
982
Normal
N/A
983
Tumor
N/A
984
Normal
N/A
411
Tumor
N/A
412
Normal
N/A
413
Tumor
N/A
414
Normal
N/A
415
Tumor
N/A
416
Normal
N/A
421
Tumor
N/A
422
Normal
N/A
423
Tumor
N/A
424
Normal
N/A
425
Tumor
N/A
426
Normal
N/A
427
Tumor
N/A
428
Normal
N/A
327
Tumor
N/A
328
Normal
N/A
211
Tumor
N/A
212
Normal
N/A
341
Tumor
N/A
342
Normal
N/A
343
Tumor
N/A
223
Tumor
N/A
344
Normal
N/A
224
Normal
N/A
227
Tumor
N/A
228
Normal
N/A
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.